Wall clock time and date at job start Tue Mar 31 2020 16:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 113.99821 * 2 1 4 4 C 1.50702 * 109.47197 * 180.02562 * 3 2 1 5 5 C 1.38377 * 119.92445 * 270.02177 * 4 3 2 6 6 C 1.38340 * 120.29263 * 179.97438 * 5 4 3 7 7 C 1.37986 * 120.14374 * 359.74777 * 6 5 4 8 8 C 1.39556 * 119.85120 * 0.48165 * 7 6 5 9 9 C 1.47846 * 120.14355 * 179.78845 * 8 7 6 10 10 O 1.21550 * 120.00048 * 179.71821 * 9 8 7 11 11 N 1.34770 * 120.00105 * 359.73032 * 9 8 7 12 12 C 1.46500 * 120.00283 * 185.21155 * 11 9 8 13 13 C 1.53005 * 109.46796 * 294.96545 * 12 11 9 14 14 C 1.52997 * 109.46964 * 54.96365 * 12 11 9 15 15 N 1.46499 * 109.47278 * 60.00565 * 14 12 11 16 16 C 1.36940 * 119.99865 * 180.02562 * 15 14 12 17 17 H 1.07999 * 120.00232 * 359.97438 * 16 15 14 18 18 C 1.38807 * 119.99839 * 179.97438 * 16 15 14 19 19 N 1.31622 * 120.00267 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 120.00109 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46825 * 60.00251 * 20 18 16 22 22 H 1.48499 * 109.46888 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47059 * 300.00170 * 20 18 16 24 24 C 1.52998 * 109.47106 * 174.96602 * 12 11 9 25 25 C 1.52995 * 117.50250 * 54.04094 * 24 12 11 26 26 C 1.52999 * 117.50072 * 345.41422 * 24 12 11 27 27 C 1.37940 * 119.92815 * 89.99617 * 4 3 2 28 28 H 1.08998 * 109.46781 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46754 * 300.00241 * 1 2 3 30 30 H 1.08996 * 109.46972 * 60.00412 * 1 2 3 31 31 H 1.08997 * 109.47466 * 60.00042 * 3 2 1 32 32 H 1.09008 * 109.46744 * 299.99653 * 3 2 1 33 33 H 1.08003 * 119.85683 * 359.97438 * 5 4 3 34 34 H 1.08000 * 119.93100 * 179.97438 * 6 5 4 35 35 H 1.07993 * 120.07331 * 180.24648 * 7 6 5 36 36 H 0.97008 * 119.99903 * 5.20287 * 11 9 8 37 37 H 1.09002 * 109.47004 * 299.99756 * 13 12 11 38 38 H 1.08996 * 109.47268 * 59.99509 * 13 12 11 39 39 H 1.08999 * 109.46769 * 179.97438 * 13 12 11 40 40 H 1.09003 * 109.46695 * 180.02562 * 14 12 11 41 41 H 1.09001 * 109.47273 * 300.00107 * 14 12 11 42 42 H 0.96993 * 120.00146 * 359.97438 * 15 14 12 43 43 H 0.96995 * 120.00375 * 179.97438 * 19 18 16 44 44 H 1.09005 * 115.55854 * 199.72714 * 24 12 11 45 45 H 1.08999 * 117.50244 * 145.01965 * 25 24 12 46 46 H 1.09005 * 117.49790 * 359.97438 * 25 24 12 47 47 H 1.08994 * 117.50223 * 359.97438 * 26 24 12 48 48 H 1.09004 * 117.49929 * 214.98306 * 26 24 12 49 49 H 1.07998 * 120.07588 * 0.02562 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 6 4.2012 1.1314 1.1984 6 6 5.5802 1.0217 1.2067 7 6 6.2777 0.9613 0.0176 8 6 5.5897 1.0213 -1.1951 9 6 6.3309 0.9619 -2.4729 10 8 5.7286 1.0091 -3.5277 11 7 7.6743 0.8550 -2.4683 12 6 8.4180 0.9110 -3.7293 13 6 8.0516 -0.2987 -4.5915 14 6 8.0592 2.1971 -4.4762 15 7 8.4101 3.3554 -3.6507 16 6 8.1782 4.6226 -4.1151 17 1 7.7371 4.7682 -5.0900 18 6 8.5102 5.7200 -3.3326 19 7 9.0483 5.5427 -2.1446 20 14 8.1945 7.4487 -3.9663 21 1 6.7434 7.6219 -4.2300 22 1 8.6347 8.4369 -2.9490 23 1 8.9551 7.6615 -5.2239 24 6 9.9197 0.8928 -3.4370 25 6 10.4573 -0.2484 -2.5714 26 6 10.3628 1.1671 -1.9985 27 6 4.1981 1.1324 -1.1964 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8464 -0.8901 33 1 3.6597 1.1742 2.1319 34 1 6.1117 0.9796 2.1459 35 1 7.3538 0.8717 0.0254 36 1 8.1490 0.7411 -1.6300 37 1 8.3072 -1.2150 -4.0594 38 1 6.9818 -0.2859 -4.7997 39 1 8.6045 -0.2568 -5.5299 40 1 8.6122 2.2385 -5.4147 41 1 6.9894 2.2100 -4.6845 42 1 8.8060 3.2247 -2.7749 43 1 9.2806 6.3095 -1.5980 44 1 10.5595 1.2602 -4.2395 45 1 11.4506 -0.6319 -2.8043 46 1 9.7410 -0.9862 -2.2098 47 1 9.5846 1.3609 -1.2604 48 1 11.2941 1.7150 -1.8545 49 1 3.6595 1.1755 -2.1315 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568022723.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:27 Heat of formation + Delta-G solvation = -6.610061 kcal Electronic energy + Delta-G solvation = -29312.079759 eV Core-core repulsion = 25433.909876 eV Total energy + Delta-G solvation = -3878.169884 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.42840 -39.20234 -37.82475 -37.15354 -34.45352 -33.41330 -32.44209 -31.39781 -30.67511 -29.72000 -27.41550 -25.67521 -25.42780 -24.12041 -23.02488 -22.14568 -21.94846 -21.77626 -20.33159 -18.80344 -17.91289 -17.00298 -16.57955 -16.17963 -16.14252 -15.55557 -15.45002 -14.96377 -14.55777 -14.47969 -14.39622 -14.16902 -13.71281 -13.43356 -13.37457 -12.79278 -12.62319 -12.53657 -12.44347 -12.31412 -12.10052 -11.72043 -11.61754 -11.51178 -11.40228 -11.21422 -11.03259 -10.84760 -10.74914 -10.68435 -10.10976 -9.91569 -9.88411 -9.86609 -9.57706 -9.33520 -8.90582 -8.89618 -8.70853 -8.48765 -6.76031 -5.67070 -2.92429 0.95581 1.31802 3.05381 3.47430 3.49998 3.53214 3.55073 3.70831 4.07085 4.14508 4.67645 4.69039 4.71224 4.81882 4.90245 5.03188 5.05399 5.14360 5.14931 5.15475 5.17079 5.24195 5.31032 5.42598 5.43302 5.56970 5.66629 5.70804 5.77894 5.81647 5.85535 5.97663 6.00801 6.20318 6.23721 6.33903 6.34430 6.36728 6.39900 6.43645 6.49356 6.62976 6.64952 6.85774 6.92554 6.97461 7.18844 7.79755 7.92195 8.52972 8.64712 9.64563 10.24259 10.61455 11.56061 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.009192 B = 0.003913 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3045.495245 B = 7154.348472 C = 8661.601301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.386 6.386 3 C 0.104 3.896 4 C -0.104 4.104 5 C -0.079 4.079 6 C -0.129 4.129 7 C -0.076 4.076 8 C -0.124 4.124 9 C 0.567 3.433 10 O -0.529 6.529 11 N -0.711 5.711 12 C 0.200 3.800 13 C -0.154 4.154 14 C 0.140 3.860 15 N -0.725 5.725 16 C -0.229 4.229 17 H 0.067 0.933 18 C -0.015 4.015 19 N -0.935 5.935 20 Si 0.904 3.096 21 H -0.288 1.288 22 H -0.292 1.292 23 H -0.287 1.287 24 C -0.137 4.137 25 C -0.189 4.189 26 C -0.169 4.169 27 C -0.038 4.038 28 H 0.085 0.915 29 H 0.040 0.960 30 H 0.042 0.958 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.125 0.875 34 H 0.129 0.871 35 H 0.125 0.875 36 H 0.394 0.606 37 H 0.052 0.948 38 H 0.075 0.925 39 H 0.062 0.938 40 H 0.022 0.978 41 H 0.050 0.950 42 H 0.384 0.616 43 H 0.252 0.748 44 H 0.117 0.883 45 H 0.092 0.908 46 H 0.090 0.910 47 H 0.092 0.908 48 H 0.099 0.901 49 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.955 -14.706 7.547 18.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C 0.028 3.972 4 C -0.104 4.104 5 C -0.097 4.097 6 C -0.147 4.147 7 C -0.095 4.095 8 C -0.127 4.127 9 C 0.354 3.646 10 O -0.407 6.407 11 N -0.365 5.365 12 C 0.114 3.886 13 C -0.212 4.212 14 C 0.012 3.988 15 N -0.369 5.369 16 C -0.361 4.361 17 H 0.085 0.915 18 C -0.211 4.211 19 N -0.585 5.585 20 Si 0.735 3.265 21 H -0.215 1.215 22 H -0.218 1.218 23 H -0.214 1.214 24 C -0.155 4.155 25 C -0.226 4.226 26 C -0.206 4.206 27 C -0.057 4.057 28 H 0.104 0.896 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.142 0.858 34 H 0.147 0.853 35 H 0.143 0.857 36 H 0.232 0.768 37 H 0.071 0.929 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.040 0.960 41 H 0.067 0.933 42 H 0.219 0.781 43 H 0.062 0.938 44 H 0.135 0.865 45 H 0.111 0.889 46 H 0.108 0.892 47 H 0.110 0.890 48 H 0.118 0.882 49 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.300 -14.680 6.668 18.135 hybrid contribution 0.144 1.396 0.483 1.484 sum -8.156 -13.284 7.152 17.151 Atomic orbital electron populations 1.22754 0.81068 1.02766 1.00037 1.87975 1.19539 1.27544 1.95424 1.21342 0.89654 0.85004 1.01209 1.19468 0.94098 1.03540 0.93322 1.21163 0.94338 0.96865 0.97372 1.21044 0.94110 1.01470 0.98067 1.21351 0.99758 0.96471 0.91925 1.20040 0.94306 1.04971 0.93426 1.18003 0.82101 0.75995 0.88463 1.90688 1.68478 1.49379 1.32142 1.46083 1.06240 1.74207 1.09987 1.20090 0.88160 0.96603 0.83705 1.22096 1.03449 0.96338 0.99347 1.21121 0.99425 0.85190 0.93045 1.42215 1.75050 1.00314 1.19325 1.19203 1.33161 0.83500 1.00230 0.91508 1.24649 1.02238 0.97502 0.96690 1.69640 1.49025 1.29204 1.10633 0.86310 0.77805 0.84874 0.77498 1.21460 1.21824 1.21440 1.22413 0.95019 1.02424 0.95664 1.23032 1.02259 0.91866 1.05440 1.22896 1.03345 0.97812 0.96528 1.21124 0.92801 0.93637 0.98166 0.89616 0.94106 0.93908 0.92256 0.92032 0.85752 0.85286 0.85744 0.76769 0.92939 0.90604 0.91857 0.95985 0.93250 0.78132 0.93782 0.86545 0.88916 0.89178 0.89019 0.88208 0.84634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.36 16 2 O -0.39 -4.55 10.69 -35.23 -0.38 -4.93 16 3 C 0.10 1.15 6.06 36.01 0.22 1.37 16 4 C -0.10 -1.37 5.50 -104.68 -0.58 -1.95 16 5 C -0.08 -0.93 9.69 -39.49 -0.38 -1.31 16 6 C -0.13 -1.52 10.03 -39.64 -0.40 -1.92 16 7 C -0.08 -1.04 9.54 -39.18 -0.37 -1.42 16 8 C -0.12 -2.02 5.87 -104.97 -0.62 -2.64 16 9 C 0.57 10.46 7.18 -12.33 -0.09 10.37 16 10 O -0.53 -11.17 12.59 5.32 0.07 -11.10 16 11 N -0.71 -11.79 4.44 -48.54 -0.22 -12.01 16 12 C 0.20 3.42 0.52 -131.82 -0.07 3.35 16 13 C -0.15 -2.33 8.37 37.16 0.31 -2.02 16 14 C 0.14 3.07 4.89 -4.04 -0.02 3.05 16 15 N -0.72 -18.73 5.22 -59.91 -0.31 -19.04 16 16 C -0.23 -6.66 9.99 -15.06 -0.15 -6.81 16 17 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 18 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 19 N -0.94 -28.33 13.06 55.49 0.72 -27.61 16 20 Si 0.90 23.10 29.55 -169.99 -5.02 18.08 16 21 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 22 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 24 C -0.14 -2.11 4.48 -90.62 -0.41 -2.51 16 25 C -0.19 -2.29 9.53 -26.73 -0.25 -2.55 16 26 C -0.17 -2.46 8.98 -26.73 -0.24 -2.70 16 27 C -0.04 -0.59 9.24 -39.18 -0.36 -0.96 16 28 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 32 H 0.06 0.65 8.08 -51.92 -0.42 0.23 16 33 H 0.12 1.14 8.06 -52.48 -0.42 0.71 16 34 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 35 H 0.12 1.48 6.42 -52.49 -0.34 1.14 16 36 H 0.39 5.72 3.69 -40.82 -0.15 5.57 16 37 H 0.05 0.70 7.71 -51.93 -0.40 0.30 16 38 H 0.08 1.28 6.36 -51.93 -0.33 0.95 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.05 1.20 5.99 -51.93 -0.31 0.89 16 42 H 0.38 10.08 6.43 -40.82 -0.26 9.82 16 43 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 44 H 0.12 1.88 8.14 -51.93 -0.42 1.45 16 45 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.09 1.02 7.99 -51.93 -0.42 0.60 16 47 H 0.09 1.35 5.95 -51.93 -0.31 1.04 16 48 H 0.10 1.49 8.14 -51.93 -0.42 1.06 16 49 H 0.14 2.15 7.65 -52.49 -0.40 1.75 16 LS Contribution 395.02 15.07 5.95 5.95 Total: -1.00 -34.21 395.02 -9.11 -43.32 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: -7.53 Total: 15.16 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -2.39 Total: -7.83 kcal Atomic # 7 Polarization: -58.85 SS G_CDS: 0.20 Total: -58.66 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -0.31 Total: -16.03 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -5.02 Total: 18.08 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.21 -9.11 -43.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568022723.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.710 kcal (2) G-P(sol) polarization free energy of solvation -34.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds