Wall clock time and date at job start Tue Mar 31 2020 16:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 113.99821 * 2 1 4 4 C 1.50702 * 109.47197 * 180.02562 * 3 2 1 5 5 C 1.38377 * 119.92445 * 270.02177 * 4 3 2 6 6 C 1.38340 * 120.29263 * 179.97438 * 5 4 3 7 7 C 1.37986 * 120.14374 * 359.74777 * 6 5 4 8 8 C 1.39556 * 119.85120 * 0.48165 * 7 6 5 9 9 C 1.47846 * 120.14355 * 179.78845 * 8 7 6 10 10 O 1.21550 * 120.00048 * 179.71821 * 9 8 7 11 11 N 1.34770 * 120.00105 * 359.73032 * 9 8 7 12 12 C 1.46500 * 120.00283 * 185.21155 * 11 9 8 13 13 C 1.53005 * 109.46796 * 294.96545 * 12 11 9 14 14 C 1.52997 * 109.46964 * 54.96365 * 12 11 9 15 15 N 1.46499 * 109.47278 * 60.00565 * 14 12 11 16 16 C 1.36940 * 119.99865 * 180.02562 * 15 14 12 17 17 H 1.07999 * 120.00232 * 359.97438 * 16 15 14 18 18 C 1.38807 * 119.99839 * 179.97438 * 16 15 14 19 19 N 1.31622 * 120.00267 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 120.00109 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46825 * 60.00251 * 20 18 16 22 22 H 1.48499 * 109.46888 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47059 * 300.00170 * 20 18 16 24 24 C 1.52998 * 109.47106 * 174.96602 * 12 11 9 25 25 C 1.52995 * 117.50250 * 54.04094 * 24 12 11 26 26 C 1.52999 * 117.50072 * 345.41422 * 24 12 11 27 27 C 1.37940 * 119.92815 * 89.99617 * 4 3 2 28 28 H 1.08998 * 109.46781 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46754 * 300.00241 * 1 2 3 30 30 H 1.08996 * 109.46972 * 60.00412 * 1 2 3 31 31 H 1.08997 * 109.47466 * 60.00042 * 3 2 1 32 32 H 1.09008 * 109.46744 * 299.99653 * 3 2 1 33 33 H 1.08003 * 119.85683 * 359.97438 * 5 4 3 34 34 H 1.08000 * 119.93100 * 179.97438 * 6 5 4 35 35 H 1.07993 * 120.07331 * 180.24648 * 7 6 5 36 36 H 0.97008 * 119.99903 * 5.20287 * 11 9 8 37 37 H 1.09002 * 109.47004 * 299.99756 * 13 12 11 38 38 H 1.08996 * 109.47268 * 59.99509 * 13 12 11 39 39 H 1.08999 * 109.46769 * 179.97438 * 13 12 11 40 40 H 1.09003 * 109.46695 * 180.02562 * 14 12 11 41 41 H 1.09001 * 109.47273 * 300.00107 * 14 12 11 42 42 H 0.96993 * 120.00146 * 359.97438 * 15 14 12 43 43 H 0.96995 * 120.00375 * 179.97438 * 19 18 16 44 44 H 1.09005 * 115.55854 * 199.72714 * 24 12 11 45 45 H 1.08999 * 117.50244 * 145.01965 * 25 24 12 46 46 H 1.09005 * 117.49790 * 359.97438 * 25 24 12 47 47 H 1.08994 * 117.50223 * 359.97438 * 26 24 12 48 48 H 1.09004 * 117.49929 * 214.98306 * 26 24 12 49 49 H 1.07998 * 120.07588 * 0.02562 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 6 4.2012 1.1314 1.1984 6 6 5.5802 1.0217 1.2067 7 6 6.2777 0.9613 0.0176 8 6 5.5897 1.0213 -1.1951 9 6 6.3309 0.9619 -2.4729 10 8 5.7286 1.0091 -3.5277 11 7 7.6743 0.8550 -2.4683 12 6 8.4180 0.9110 -3.7293 13 6 8.0516 -0.2987 -4.5915 14 6 8.0592 2.1971 -4.4762 15 7 8.4101 3.3554 -3.6507 16 6 8.1782 4.6226 -4.1151 17 1 7.7371 4.7682 -5.0900 18 6 8.5102 5.7200 -3.3326 19 7 9.0483 5.5427 -2.1446 20 14 8.1945 7.4487 -3.9663 21 1 6.7434 7.6219 -4.2300 22 1 8.6347 8.4369 -2.9490 23 1 8.9551 7.6615 -5.2239 24 6 9.9197 0.8928 -3.4370 25 6 10.4573 -0.2484 -2.5714 26 6 10.3628 1.1671 -1.9985 27 6 4.1981 1.1324 -1.1964 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8464 -0.8901 33 1 3.6597 1.1742 2.1319 34 1 6.1117 0.9796 2.1459 35 1 7.3538 0.8717 0.0254 36 1 8.1490 0.7411 -1.6300 37 1 8.3072 -1.2150 -4.0594 38 1 6.9818 -0.2859 -4.7997 39 1 8.6045 -0.2568 -5.5299 40 1 8.6122 2.2385 -5.4147 41 1 6.9894 2.2100 -4.6845 42 1 8.8060 3.2247 -2.7749 43 1 9.2806 6.3095 -1.5980 44 1 10.5595 1.2602 -4.2395 45 1 11.4506 -0.6319 -2.8043 46 1 9.7410 -0.9862 -2.2098 47 1 9.5846 1.3609 -1.2604 48 1 11.2941 1.7150 -1.8545 49 1 3.6595 1.1755 -2.1315 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568022723.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:26 Heat of formation + Delta-G solvation = -28.412615 kcal Electronic energy + Delta-G solvation = -29313.025189 eV Core-core repulsion = 25433.909876 eV Total energy + Delta-G solvation = -3879.115313 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.74460 -40.27732 -38.89392 -38.26095 -36.26892 -34.91769 -33.77186 -32.71285 -32.16326 -31.20043 -28.18932 -27.48712 -26.24918 -25.44816 -24.59748 -23.73223 -23.15971 -22.79612 -21.52088 -20.26185 -19.24044 -18.96754 -17.40218 -17.25912 -17.14489 -16.82613 -16.52831 -16.34310 -16.06458 -15.99784 -15.47155 -15.35547 -15.26413 -15.06721 -14.74789 -14.07015 -13.98384 -13.83235 -13.68383 -13.51348 -13.19383 -13.18528 -12.92092 -12.76983 -12.58307 -12.54013 -12.35782 -12.30677 -12.22431 -12.05830 -11.98127 -11.78308 -11.14774 -11.05345 -10.98450 -10.69225 -10.61292 -10.07344 -9.93459 -9.81135 -8.91374 -7.93071 -5.18676 -0.14157 0.27808 1.43425 1.46349 1.52348 1.84518 2.18785 2.55656 2.70376 2.94070 3.15193 3.38322 3.56576 3.71614 3.76088 3.82143 3.89602 3.98944 4.06583 4.09915 4.20610 4.28689 4.32153 4.38673 4.52908 4.56156 4.57125 4.59934 4.65832 4.74872 4.83266 4.84407 4.86191 4.86954 4.94431 4.96740 5.06189 5.17869 5.24175 5.28448 5.29877 5.35997 5.37911 5.47146 5.48026 5.67230 5.88299 6.17306 6.29447 6.58805 7.27351 7.37332 8.12856 8.44361 9.29487 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.009192 B = 0.003913 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3045.495245 B = 7154.348472 C = 8661.601301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.410 6.410 3 C 0.104 3.896 4 C -0.110 4.110 5 C -0.073 4.073 6 C -0.123 4.123 7 C -0.083 4.083 8 C -0.154 4.154 9 C 0.558 3.442 10 O -0.569 6.569 11 N -0.702 5.702 12 C 0.206 3.794 13 C -0.146 4.146 14 C 0.140 3.860 15 N -0.728 5.728 16 C -0.248 4.248 17 H 0.060 0.940 18 C -0.066 4.066 19 N -0.959 5.959 20 Si 0.966 3.034 21 H -0.286 1.286 22 H -0.289 1.289 23 H -0.279 1.279 24 C -0.159 4.159 25 C -0.145 4.145 26 C -0.182 4.182 27 C -0.061 4.061 28 H 0.097 0.903 29 H 0.058 0.942 30 H 0.045 0.955 31 H 0.085 0.915 32 H 0.057 0.943 33 H 0.159 0.841 34 H 0.165 0.835 35 H 0.139 0.861 36 H 0.404 0.596 37 H 0.077 0.923 38 H 0.052 0.948 39 H 0.075 0.925 40 H 0.020 0.980 41 H 0.021 0.979 42 H 0.382 0.618 43 H 0.251 0.749 44 H 0.107 0.893 45 H 0.116 0.884 46 H 0.106 0.894 47 H 0.088 0.912 48 H 0.094 0.906 49 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.686 -15.574 9.724 19.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.330 6.330 3 C 0.028 3.972 4 C -0.110 4.110 5 C -0.091 4.091 6 C -0.141 4.141 7 C -0.101 4.101 8 C -0.157 4.157 9 C 0.346 3.654 10 O -0.450 6.450 11 N -0.356 5.356 12 C 0.121 3.879 13 C -0.204 4.204 14 C 0.013 3.987 15 N -0.371 5.371 16 C -0.380 4.380 17 H 0.079 0.921 18 C -0.259 4.259 19 N -0.610 5.610 20 Si 0.796 3.204 21 H -0.213 1.213 22 H -0.215 1.215 23 H -0.205 1.205 24 C -0.178 4.178 25 C -0.182 4.182 26 C -0.219 4.219 27 C -0.081 4.081 28 H 0.115 0.885 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.103 0.897 32 H 0.075 0.925 33 H 0.177 0.823 34 H 0.183 0.817 35 H 0.157 0.843 36 H 0.245 0.755 37 H 0.096 0.904 38 H 0.071 0.929 39 H 0.094 0.906 40 H 0.038 0.962 41 H 0.039 0.961 42 H 0.215 0.785 43 H 0.060 0.940 44 H 0.125 0.875 45 H 0.134 0.866 46 H 0.124 0.876 47 H 0.106 0.894 48 H 0.112 0.888 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -8.020 -15.575 8.845 19.625 hybrid contribution -0.010 1.651 -0.181 1.661 sum -8.030 -13.923 8.664 18.259 Atomic orbital electron populations 1.22959 0.79241 1.03924 1.01069 1.87927 1.21598 1.27862 1.95635 1.21381 0.88390 0.85140 1.02265 1.19765 0.95437 1.02834 0.93004 1.21614 0.94624 0.94811 0.98005 1.21490 0.94367 0.99601 0.98636 1.21586 1.00619 0.96283 0.91656 1.20033 0.94648 1.07613 0.93375 1.18519 0.82617 0.75252 0.88989 1.90657 1.69295 1.51303 1.33696 1.46016 1.05781 1.73476 1.10343 1.19937 0.89551 0.94661 0.83795 1.22021 1.02075 0.96373 0.99921 1.21155 0.97502 0.86671 0.93397 1.42261 1.74838 1.00486 1.19546 1.19511 1.33058 0.85197 1.00216 0.92149 1.25381 1.02457 1.00989 0.97064 1.69772 1.49788 1.29956 1.11462 0.85327 0.77557 0.80363 0.77190 1.21305 1.21474 1.20543 1.22292 0.93417 1.06040 0.96045 1.23108 1.03368 0.90466 1.01263 1.22914 1.02982 1.00304 0.95717 1.21133 0.92892 0.95430 0.98607 0.88484 0.92313 0.93609 0.89662 0.92483 0.82306 0.81701 0.84327 0.75516 0.90403 0.92919 0.90624 0.96193 0.96130 0.78468 0.94027 0.87521 0.86591 0.87580 0.89416 0.88760 0.86705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 11.01 113.37 1.25 1.60 16 2 O -0.41 -9.30 10.69 -148.98 -1.59 -10.90 16 3 C 0.10 2.21 6.06 71.24 0.43 2.65 16 4 C -0.11 -2.85 5.50 -19.90 -0.11 -2.96 16 5 C -0.07 -1.52 9.69 22.33 0.22 -1.30 16 6 C -0.12 -2.58 10.03 22.23 0.22 -2.36 16 7 C -0.08 -2.19 9.54 22.53 0.21 -1.97 16 8 C -0.15 -5.17 5.87 -20.09 -0.12 -5.28 16 9 C 0.56 21.57 7.18 86.79 0.62 22.20 16 10 O -0.57 -25.81 12.59 -3.87 -0.05 -25.86 16 11 N -0.70 -23.66 4.44 -425.77 -1.89 -25.55 16 12 C 0.21 7.16 0.52 3.60 0.00 7.16 16 13 C -0.15 -4.39 8.37 71.98 0.60 -3.78 16 14 C 0.14 6.43 4.89 86.38 0.42 6.85 16 15 N -0.73 -38.88 5.22 -343.46 -1.79 -40.67 16 16 C -0.25 -14.76 9.99 84.03 0.84 -13.92 16 17 H 0.06 3.59 7.83 -2.91 -0.02 3.56 16 18 C -0.07 -3.91 5.50 84.86 0.47 -3.45 16 19 N -0.96 -58.63 13.06 21.65 0.28 -58.35 16 20 Si 0.97 47.96 29.55 68.60 2.03 49.98 16 21 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 22 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 23 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 24 C -0.16 -4.80 4.48 -10.80 -0.05 -4.85 16 25 C -0.15 -3.11 9.53 30.59 0.29 -2.82 16 26 C -0.18 -5.12 8.98 30.59 0.27 -4.84 16 27 C -0.06 -2.00 9.24 22.53 0.21 -1.79 16 28 H 0.10 1.16 8.14 -2.39 -0.02 1.15 16 29 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.09 1.34 8.08 -2.39 -0.02 1.32 16 32 H 0.06 1.23 8.08 -2.38 -0.02 1.21 16 33 H 0.16 2.21 8.06 -2.91 -0.02 2.19 16 34 H 0.17 2.25 8.06 -2.91 -0.02 2.23 16 35 H 0.14 3.12 6.42 -2.91 -0.02 3.10 16 36 H 0.40 11.60 3.69 -92.70 -0.34 11.26 16 37 H 0.08 1.93 7.71 -2.39 -0.02 1.92 16 38 H 0.05 1.85 6.36 -2.39 -0.02 1.83 16 39 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.02 1.08 5.99 -2.39 -0.01 1.06 16 42 H 0.38 20.55 6.43 -92.71 -0.60 19.96 16 43 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 44 H 0.11 3.42 8.14 -2.38 -0.02 3.40 16 45 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 46 H 0.11 1.99 7.99 -2.38 -0.02 1.97 16 47 H 0.09 2.51 5.95 -2.39 -0.01 2.50 16 48 H 0.09 2.75 8.14 -2.38 -0.02 2.73 16 49 H 0.11 4.06 7.65 -2.91 -0.02 4.04 16 Total: -1.00 -76.76 395.02 2.80 -73.95 By element: Atomic # 1 Polarization: 46.23 SS G_CDS: 0.03 Total: 46.26 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: 5.79 Total: -8.87 kcal Atomic # 7 Polarization: -121.18 SS G_CDS: -3.40 Total: -124.58 kcal Atomic # 8 Polarization: -35.11 SS G_CDS: -1.64 Total: -36.75 kcal Atomic # 14 Polarization: 47.96 SS G_CDS: 2.03 Total: 49.98 kcal Total: -76.76 2.80 -73.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568022723.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.542 kcal (2) G-P(sol) polarization free energy of solvation -76.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds