Wall clock time and date at job start Tue Mar 31 2020 16:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42896 * 113.99912 * 2 1 4 4 C 1.50702 * 109.47219 * 180.02562 * 3 2 1 5 5 C 1.38387 * 119.92382 * 269.97795 * 4 3 2 6 6 C 1.38340 * 120.29099 * 180.02562 * 5 4 3 7 7 C 1.37977 * 120.14649 * 359.69835 * 6 5 4 8 8 C 1.39563 * 119.85118 * 0.57858 * 7 6 5 9 9 C 1.47839 * 120.14431 * 179.72482 * 8 7 6 10 10 O 1.21562 * 119.99817 * 179.71804 * 9 8 7 11 11 N 1.34772 * 120.00404 * 359.71738 * 9 8 7 12 12 C 1.46501 * 120.00331 * 185.23075 * 11 9 8 13 13 C 1.53004 * 109.47120 * 183.80907 * 12 11 9 14 14 C 1.52998 * 109.47081 * 63.80689 * 12 11 9 15 15 N 1.46503 * 109.47215 * 59.99966 * 14 12 11 16 16 C 1.36933 * 120.00089 * 180.02562 * 15 14 12 17 17 H 1.07996 * 120.00180 * 359.97438 * 16 15 14 18 18 C 1.38817 * 119.99725 * 179.97438 * 16 15 14 19 19 N 1.31611 * 120.00229 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99791 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.46733 * 60.00461 * 20 18 16 22 22 H 1.48498 * 109.47174 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47154 * 300.00449 * 20 18 16 24 24 C 1.53004 * 109.47206 * 303.80737 * 12 11 9 25 25 C 1.52994 * 117.51644 * 228.45636 * 24 12 11 26 26 C 1.53001 * 117.49459 * 297.08542 * 24 12 11 27 27 C 1.37933 * 119.93257 * 89.99584 * 4 3 2 28 28 H 1.09008 * 109.47098 * 60.00259 * 1 2 3 29 29 H 1.09004 * 109.47064 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47481 * 299.99888 * 1 2 3 31 31 H 1.09001 * 109.47666 * 59.99884 * 3 2 1 32 32 H 1.09000 * 109.47462 * 299.99287 * 3 2 1 33 33 H 1.08001 * 119.85810 * 359.97438 * 5 4 3 34 34 H 1.07998 * 119.92459 * 179.97438 * 6 5 4 35 35 H 1.07995 * 120.07765 * 180.27285 * 7 6 5 36 36 H 0.97004 * 120.00126 * 5.23527 * 11 9 8 37 37 H 1.08995 * 109.47109 * 180.02562 * 13 12 11 38 38 H 1.09003 * 109.46653 * 299.99914 * 13 12 11 39 39 H 1.09002 * 109.47396 * 59.99928 * 13 12 11 40 40 H 1.08995 * 109.47352 * 179.97438 * 14 12 11 41 41 H 1.08998 * 109.47268 * 300.00084 * 14 12 11 42 42 H 0.97001 * 119.99831 * 0.02562 * 15 14 12 43 43 H 0.96998 * 120.00442 * 179.97438 * 19 18 16 44 44 H 1.08996 * 115.54794 * 82.75034 * 24 12 11 45 45 H 1.09004 * 117.50078 * 214.96986 * 25 24 12 46 46 H 1.09001 * 117.50322 * 359.97438 * 25 24 12 47 47 H 1.08994 * 117.50482 * 359.97438 * 26 24 12 48 48 H 1.09005 * 117.49286 * 145.00140 * 26 24 12 49 49 H 1.08003 * 120.06966 * 0.02939 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2012 1.1322 1.1985 6 6 5.5803 1.0236 1.2067 7 6 6.2777 0.9623 0.0178 8 6 5.5897 1.0224 -1.1950 9 6 6.3310 0.9634 -2.4728 10 8 5.7286 1.0108 -3.5276 11 7 7.6745 0.8572 -2.4682 12 6 8.4182 0.9141 -3.7292 13 6 9.9046 0.6754 -3.4559 14 6 8.2319 2.2911 -4.3694 15 7 8.7332 3.3244 -3.4598 16 6 8.6704 4.6437 -3.8211 17 1 8.2518 4.9226 -4.7768 18 6 9.1449 5.6228 -2.9589 19 7 9.6556 5.2829 -1.7945 20 14 9.0600 7.4225 -3.4521 21 1 7.6442 7.8054 -3.6854 22 1 9.6274 8.2608 -2.3656 23 1 9.8411 7.6319 -4.6976 24 6 7.8946 -0.1650 -4.6792 25 6 8.9260 -1.0588 -5.3707 26 6 8.0544 -1.6241 -4.2474 27 6 4.1981 1.1323 -1.1963 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6885 1.8464 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 3.6597 1.1757 2.1319 34 1 6.1118 0.9821 2.1459 35 1 7.3539 0.8731 0.0256 36 1 8.1492 0.7430 -1.6300 37 1 10.4579 0.7182 -4.3939 38 1 10.2775 1.4442 -2.7791 39 1 10.0372 -0.3056 -2.9997 40 1 8.7856 2.3337 -5.3073 41 1 7.1730 2.4611 -4.5641 42 1 9.1096 3.0740 -2.6015 43 1 9.9875 5.9670 -1.1922 44 1 6.9989 0.0982 -5.2417 45 1 8.7089 -1.3836 -6.3883 46 1 9.9779 -0.8780 -5.1493 47 1 8.5328 -1.8154 -3.2869 48 1 7.2638 -2.3208 -4.5261 49 1 3.6594 1.1755 -2.1314 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568022724.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:31 Heat of formation + Delta-G solvation = -10.684129 kcal Electronic energy + Delta-G solvation = -29060.977051 eV Core-core repulsion = 25182.630502 eV Total energy + Delta-G solvation = -3878.346549 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -40.32988 -39.19070 -37.83722 -37.07905 -34.93027 -33.52031 -32.28627 -31.30555 -30.71460 -29.21459 -27.42161 -26.16095 -25.43512 -24.21254 -23.48065 -22.18362 -21.78843 -21.34012 -20.25443 -18.63602 -17.70702 -17.20788 -16.58298 -16.22920 -16.01834 -15.85621 -15.47228 -15.16137 -14.67677 -14.46963 -14.26250 -14.17120 -13.90167 -13.54107 -13.18072 -12.85134 -12.74318 -12.49384 -12.46299 -12.28595 -12.02447 -11.82267 -11.67962 -11.50143 -11.24073 -11.04051 -11.01952 -10.86489 -10.77176 -10.58056 -10.22540 -10.13732 -9.92185 -9.85659 -9.61474 -9.28904 -8.90313 -8.89396 -8.77862 -8.50619 -6.83172 -5.71873 -2.97962 0.96226 1.32082 3.06857 3.41703 3.47825 3.51379 3.53080 3.70644 4.09799 4.21091 4.61458 4.68877 4.72222 4.82949 4.94209 5.03860 5.04721 5.13739 5.14831 5.16318 5.22986 5.26656 5.35491 5.41297 5.42028 5.50243 5.58313 5.64469 5.70437 5.80441 5.83705 5.97542 5.98653 6.05508 6.24988 6.26631 6.31297 6.37096 6.38747 6.47789 6.57362 6.59436 6.65498 6.85727 6.91737 6.94271 7.12982 7.76114 7.95110 8.47844 8.66699 9.59210 10.16994 10.52970 11.51343 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.008588 B = 0.003887 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3259.613423 B = 7201.729474 C = 9234.148714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.104 3.896 4 C -0.105 4.105 5 C -0.079 4.079 6 C -0.129 4.129 7 C -0.074 4.074 8 C -0.125 4.125 9 C 0.569 3.431 10 O -0.533 6.533 11 N -0.705 5.705 12 C 0.202 3.798 13 C -0.155 4.155 14 C 0.146 3.854 15 N -0.726 5.726 16 C -0.231 4.231 17 H 0.068 0.932 18 C -0.015 4.015 19 N -0.936 5.936 20 Si 0.905 3.095 21 H -0.287 1.287 22 H -0.292 1.292 23 H -0.287 1.287 24 C -0.141 4.141 25 C -0.183 4.183 26 C -0.175 4.175 27 C -0.040 4.040 28 H 0.042 0.958 29 H 0.085 0.915 30 H 0.040 0.960 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.124 0.876 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.395 0.605 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.053 0.947 40 H 0.026 0.974 41 H 0.038 0.962 42 H 0.381 0.619 43 H 0.254 0.746 44 H 0.116 0.884 45 H 0.089 0.911 46 H 0.100 0.900 47 H 0.089 0.911 48 H 0.087 0.913 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.294 -14.732 5.499 18.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C 0.028 3.972 4 C -0.106 4.106 5 C -0.098 4.098 6 C -0.147 4.147 7 C -0.093 4.093 8 C -0.128 4.128 9 C 0.356 3.644 10 O -0.411 6.411 11 N -0.355 5.355 12 C 0.116 3.884 13 C -0.213 4.213 14 C 0.018 3.982 15 N -0.371 5.371 16 C -0.363 4.363 17 H 0.086 0.914 18 C -0.210 4.210 19 N -0.586 5.586 20 Si 0.737 3.263 21 H -0.214 1.214 22 H -0.218 1.218 23 H -0.214 1.214 24 C -0.161 4.161 25 C -0.221 4.221 26 C -0.212 4.212 27 C -0.059 4.059 28 H 0.061 0.939 29 H 0.104 0.896 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.142 0.858 34 H 0.147 0.853 35 H 0.146 0.854 36 H 0.230 0.770 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.072 0.928 40 H 0.044 0.956 41 H 0.056 0.944 42 H 0.216 0.784 43 H 0.063 0.937 44 H 0.134 0.866 45 H 0.108 0.892 46 H 0.118 0.882 47 H 0.107 0.893 48 H 0.105 0.895 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -10.619 -14.680 4.632 18.700 hybrid contribution 0.120 1.283 0.547 1.400 sum -10.499 -13.396 5.179 17.791 Atomic orbital electron populations 1.22754 0.81081 1.02772 1.00020 1.87975 1.19525 1.27550 1.95415 1.21337 0.89693 0.85002 1.01151 1.19462 0.94062 1.03690 0.93344 1.21167 0.94367 0.96882 0.97347 1.21055 0.94082 1.01449 0.98149 1.21393 0.99966 0.96101 0.91828 1.20046 0.94246 1.05014 0.93491 1.17991 0.82145 0.75912 0.88383 1.90701 1.68403 1.49680 1.32286 1.45859 1.06166 1.73917 1.09588 1.20031 0.90466 0.95046 0.82854 1.22136 0.94271 1.01464 1.03398 1.21004 0.98222 0.85978 0.92986 1.42246 1.73813 1.01776 1.19218 1.19190 1.32975 0.83181 1.00910 0.91416 1.24666 1.01984 0.97746 0.96645 1.69625 1.47318 1.32196 1.09438 0.86288 0.77573 0.85348 0.77136 1.21403 1.21777 1.21368 1.22593 1.01040 0.90636 1.01800 1.23139 0.97335 1.04484 0.97101 1.22790 1.02742 0.96682 0.98966 1.21113 0.92843 0.93811 0.98091 0.93930 0.89614 0.94105 0.92279 0.92095 0.85798 0.85296 0.85421 0.76995 0.90605 0.90631 0.92828 0.95620 0.94399 0.78440 0.93672 0.86639 0.89228 0.88215 0.89262 0.89480 0.84738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.39 -4.50 10.69 -35.23 -0.38 -4.88 16 3 C 0.10 1.13 6.06 36.01 0.22 1.35 16 4 C -0.11 -1.37 5.50 -104.68 -0.58 -1.95 16 5 C -0.08 -0.93 9.69 -39.49 -0.38 -1.31 16 6 C -0.13 -1.52 10.03 -39.64 -0.40 -1.92 16 7 C -0.07 -1.00 9.54 -39.18 -0.37 -1.38 16 8 C -0.12 -1.99 5.87 -104.97 -0.62 -2.61 16 9 C 0.57 10.23 7.18 -12.33 -0.09 10.14 16 10 O -0.53 -10.98 13.17 5.31 0.07 -10.91 16 11 N -0.70 -11.47 4.66 -48.54 -0.23 -11.69 16 12 C 0.20 3.39 0.54 -131.82 -0.07 3.32 16 13 C -0.16 -2.31 7.04 37.16 0.26 -2.05 16 14 C 0.15 3.16 5.02 -4.04 -0.02 3.14 16 15 N -0.73 -18.42 5.18 -59.91 -0.31 -18.73 16 16 C -0.23 -6.61 9.99 -15.06 -0.15 -6.76 16 17 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 18 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 19 N -0.94 -28.05 13.06 55.49 0.72 -27.33 16 20 Si 0.91 22.87 29.55 -169.99 -5.02 17.85 16 21 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 22 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 C -0.14 -2.17 4.05 -90.62 -0.37 -2.54 16 25 C -0.18 -2.30 9.61 -26.73 -0.26 -2.56 16 26 C -0.17 -2.25 9.81 -26.73 -0.26 -2.51 16 27 C -0.04 -0.60 9.24 -39.19 -0.36 -0.96 16 28 H 0.04 0.30 8.14 -51.92 -0.42 -0.12 16 29 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 32 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 33 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 34 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 35 H 0.13 1.50 6.42 -52.49 -0.34 1.17 16 36 H 0.40 5.58 6.53 -40.82 -0.27 5.31 16 37 H 0.08 1.10 6.84 -51.93 -0.36 0.74 16 38 H 0.07 1.28 6.86 -51.93 -0.36 0.92 16 39 H 0.05 0.66 7.01 -51.93 -0.36 0.29 16 40 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.04 0.92 6.63 -51.93 -0.34 0.57 16 42 H 0.38 9.84 6.35 -40.82 -0.26 9.58 16 43 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.12 2.03 7.18 -51.93 -0.37 1.66 16 45 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.10 1.18 5.87 -51.93 -0.31 0.87 16 47 H 0.09 1.08 7.42 -51.93 -0.39 0.70 16 48 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 49 H 0.13 2.09 7.65 -52.48 -0.40 1.69 16 LS Contribution 395.35 15.07 5.96 5.96 Total: -1.00 -33.79 395.35 -9.13 -42.92 By element: Atomic # 1 Polarization: 22.10 SS G_CDS: -7.51 Total: 14.59 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: -2.43 Total: -7.77 kcal Atomic # 7 Polarization: -57.94 SS G_CDS: 0.19 Total: -57.75 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: -0.31 Total: -15.79 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.85 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.79 -9.13 -42.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568022724.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.232 kcal (2) G-P(sol) polarization free energy of solvation -33.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds