Wall clock time and date at job start Tue Mar 31 2020 16:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42896 * 113.99912 * 2 1 4 4 C 1.50702 * 109.47219 * 180.02562 * 3 2 1 5 5 C 1.38387 * 119.92382 * 269.97795 * 4 3 2 6 6 C 1.38340 * 120.29099 * 180.02562 * 5 4 3 7 7 C 1.37977 * 120.14649 * 359.69835 * 6 5 4 8 8 C 1.39563 * 119.85118 * 0.57858 * 7 6 5 9 9 C 1.47839 * 120.14431 * 179.72482 * 8 7 6 10 10 O 1.21562 * 119.99817 * 179.71804 * 9 8 7 11 11 N 1.34772 * 120.00404 * 359.71738 * 9 8 7 12 12 C 1.46501 * 120.00331 * 185.23075 * 11 9 8 13 13 C 1.53004 * 109.47120 * 183.80907 * 12 11 9 14 14 C 1.52998 * 109.47081 * 63.80689 * 12 11 9 15 15 N 1.46503 * 109.47215 * 59.99966 * 14 12 11 16 16 C 1.36933 * 120.00089 * 180.02562 * 15 14 12 17 17 H 1.07996 * 120.00180 * 359.97438 * 16 15 14 18 18 C 1.38817 * 119.99725 * 179.97438 * 16 15 14 19 19 N 1.31611 * 120.00229 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99791 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.46733 * 60.00461 * 20 18 16 22 22 H 1.48498 * 109.47174 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47154 * 300.00449 * 20 18 16 24 24 C 1.53004 * 109.47206 * 303.80737 * 12 11 9 25 25 C 1.52994 * 117.51644 * 228.45636 * 24 12 11 26 26 C 1.53001 * 117.49459 * 297.08542 * 24 12 11 27 27 C 1.37933 * 119.93257 * 89.99584 * 4 3 2 28 28 H 1.09008 * 109.47098 * 60.00259 * 1 2 3 29 29 H 1.09004 * 109.47064 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47481 * 299.99888 * 1 2 3 31 31 H 1.09001 * 109.47666 * 59.99884 * 3 2 1 32 32 H 1.09000 * 109.47462 * 299.99287 * 3 2 1 33 33 H 1.08001 * 119.85810 * 359.97438 * 5 4 3 34 34 H 1.07998 * 119.92459 * 179.97438 * 6 5 4 35 35 H 1.07995 * 120.07765 * 180.27285 * 7 6 5 36 36 H 0.97004 * 120.00126 * 5.23527 * 11 9 8 37 37 H 1.08995 * 109.47109 * 180.02562 * 13 12 11 38 38 H 1.09003 * 109.46653 * 299.99914 * 13 12 11 39 39 H 1.09002 * 109.47396 * 59.99928 * 13 12 11 40 40 H 1.08995 * 109.47352 * 179.97438 * 14 12 11 41 41 H 1.08998 * 109.47268 * 300.00084 * 14 12 11 42 42 H 0.97001 * 119.99831 * 0.02562 * 15 14 12 43 43 H 0.96998 * 120.00442 * 179.97438 * 19 18 16 44 44 H 1.08996 * 115.54794 * 82.75034 * 24 12 11 45 45 H 1.09004 * 117.50078 * 214.96986 * 25 24 12 46 46 H 1.09001 * 117.50322 * 359.97438 * 25 24 12 47 47 H 1.08994 * 117.50482 * 359.97438 * 26 24 12 48 48 H 1.09005 * 117.49286 * 145.00140 * 26 24 12 49 49 H 1.08003 * 120.06966 * 0.02939 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2012 1.1322 1.1985 6 6 5.5803 1.0236 1.2067 7 6 6.2777 0.9623 0.0178 8 6 5.5897 1.0224 -1.1950 9 6 6.3310 0.9634 -2.4728 10 8 5.7286 1.0108 -3.5276 11 7 7.6745 0.8572 -2.4682 12 6 8.4182 0.9141 -3.7292 13 6 9.9046 0.6754 -3.4559 14 6 8.2319 2.2911 -4.3694 15 7 8.7332 3.3244 -3.4598 16 6 8.6704 4.6437 -3.8211 17 1 8.2518 4.9226 -4.7768 18 6 9.1449 5.6228 -2.9589 19 7 9.6556 5.2829 -1.7945 20 14 9.0600 7.4225 -3.4521 21 1 7.6442 7.8054 -3.6854 22 1 9.6274 8.2608 -2.3656 23 1 9.8411 7.6319 -4.6976 24 6 7.8946 -0.1650 -4.6792 25 6 8.9260 -1.0588 -5.3707 26 6 8.0544 -1.6241 -4.2474 27 6 4.1981 1.1323 -1.1963 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6885 1.8464 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 3.6597 1.1757 2.1319 34 1 6.1118 0.9821 2.1459 35 1 7.3539 0.8731 0.0256 36 1 8.1492 0.7430 -1.6300 37 1 10.4579 0.7182 -4.3939 38 1 10.2775 1.4442 -2.7791 39 1 10.0372 -0.3056 -2.9997 40 1 8.7856 2.3337 -5.3073 41 1 7.1730 2.4611 -4.5641 42 1 9.1096 3.0740 -2.6015 43 1 9.9875 5.9670 -1.1922 44 1 6.9989 0.0982 -5.2417 45 1 8.7089 -1.3836 -6.3883 46 1 9.9779 -0.8780 -5.1493 47 1 8.5328 -1.8154 -3.2869 48 1 7.2638 -2.3208 -4.5261 49 1 3.6594 1.1755 -2.1314 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568022724.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:29 Heat of formation + Delta-G solvation = -32.411976 kcal Electronic energy + Delta-G solvation = -29061.919241 eV Core-core repulsion = 25182.630502 eV Total energy + Delta-G solvation = -3879.288739 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.61278 -40.26145 -38.85726 -38.19541 -36.60130 -35.13313 -33.59108 -32.70844 -32.06158 -30.70976 -28.19028 -27.77311 -26.24885 -25.81676 -24.95515 -23.27861 -22.89191 -22.79563 -21.46875 -20.05417 -19.27140 -18.80107 -17.37257 -17.35990 -17.07631 -16.92166 -16.74958 -16.41714 -16.26208 -15.82680 -15.54166 -15.40793 -15.16714 -14.99016 -14.70575 -14.52940 -13.80374 -13.67705 -13.55688 -13.39396 -13.27211 -13.17553 -12.97710 -12.78235 -12.58516 -12.45560 -12.34844 -12.19868 -12.10951 -12.01986 -11.96100 -11.73441 -11.37617 -11.04773 -10.96948 -10.68889 -10.57073 -10.08048 -9.92246 -9.79930 -8.96481 -7.95065 -5.21508 -0.12191 0.29040 1.44513 1.47140 1.53223 1.88827 2.16724 2.54925 2.71886 3.04632 3.17453 3.37502 3.52745 3.75094 3.78250 3.90276 3.94362 4.04928 4.09646 4.18090 4.21856 4.25119 4.31830 4.34357 4.39098 4.52734 4.53699 4.56739 4.62122 4.77112 4.84317 4.85894 4.87438 4.91254 4.97324 4.98584 5.01535 5.13817 5.28873 5.29628 5.31848 5.38326 5.42705 5.46573 5.48534 5.65816 5.89475 6.17439 6.27377 6.64622 7.32563 7.35102 8.07901 8.38011 9.27502 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.008588 B = 0.003887 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3259.613423 B = 7201.729474 C = 9234.148714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.411 6.411 3 C 0.104 3.896 4 C -0.111 4.111 5 C -0.073 4.073 6 C -0.125 4.125 7 C -0.081 4.081 8 C -0.153 4.153 9 C 0.560 3.440 10 O -0.572 6.572 11 N -0.697 5.697 12 C 0.210 3.790 13 C -0.147 4.147 14 C 0.150 3.850 15 N -0.728 5.728 16 C -0.249 4.249 17 H 0.061 0.939 18 C -0.065 4.065 19 N -0.960 5.960 20 Si 0.967 3.033 21 H -0.286 1.286 22 H -0.289 1.289 23 H -0.279 1.279 24 C -0.167 4.167 25 C -0.164 4.164 26 C -0.160 4.160 27 C -0.062 4.062 28 H 0.046 0.954 29 H 0.096 0.904 30 H 0.058 0.942 31 H 0.085 0.915 32 H 0.058 0.942 33 H 0.158 0.842 34 H 0.163 0.837 35 H 0.142 0.858 36 H 0.406 0.594 37 H 0.082 0.918 38 H 0.054 0.946 39 H 0.087 0.913 40 H 0.023 0.977 41 H 0.005 0.995 42 H 0.379 0.621 43 H 0.252 0.748 44 H 0.084 0.916 45 H 0.101 0.899 46 H 0.114 0.886 47 H 0.103 0.897 48 H 0.091 0.909 49 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.930 -15.606 7.330 19.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.331 6.331 3 C 0.028 3.972 4 C -0.111 4.111 5 C -0.091 4.091 6 C -0.143 4.143 7 C -0.099 4.099 8 C -0.156 4.156 9 C 0.349 3.651 10 O -0.452 6.452 11 N -0.348 5.348 12 C 0.124 3.876 13 C -0.204 4.204 14 C 0.022 3.978 15 N -0.372 5.372 16 C -0.381 4.381 17 H 0.079 0.921 18 C -0.258 4.258 19 N -0.610 5.610 20 Si 0.796 3.204 21 H -0.213 1.213 22 H -0.215 1.215 23 H -0.205 1.205 24 C -0.187 4.187 25 C -0.201 4.201 26 C -0.197 4.197 27 C -0.081 4.081 28 H 0.064 0.936 29 H 0.115 0.885 30 H 0.077 0.923 31 H 0.103 0.897 32 H 0.076 0.924 33 H 0.176 0.824 34 H 0.181 0.819 35 H 0.159 0.841 36 H 0.243 0.757 37 H 0.101 0.899 38 H 0.073 0.927 39 H 0.106 0.894 40 H 0.041 0.959 41 H 0.023 0.977 42 H 0.212 0.788 43 H 0.061 0.939 44 H 0.102 0.898 45 H 0.120 0.880 46 H 0.132 0.868 47 H 0.121 0.879 48 H 0.109 0.891 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -10.249 -15.576 6.461 19.733 hybrid contribution -0.092 1.535 -0.024 1.538 sum -10.341 -14.041 6.437 18.588 Atomic orbital electron populations 1.22959 0.79251 1.03912 1.01070 1.87926 1.21592 1.27908 1.95632 1.21380 0.88405 0.85119 1.02250 1.19759 0.95414 1.02963 0.93013 1.21603 0.94617 0.94914 0.97998 1.21483 0.94370 0.99731 0.98686 1.21621 1.00802 0.95943 0.91580 1.20038 0.94584 1.07532 0.93422 1.18473 0.82632 0.75170 0.88854 1.90672 1.69211 1.51525 1.33821 1.45814 1.05783 1.73216 1.10002 1.19860 0.92048 0.92568 0.83133 1.22081 0.92202 1.02595 1.03515 1.21008 0.95753 0.88181 0.92869 1.42290 1.73697 1.01611 1.19581 1.19483 1.32826 0.84897 1.00846 0.92072 1.25398 1.02067 1.01558 0.96794 1.69754 1.47976 1.33159 1.10129 0.85313 0.77452 0.80551 0.77035 1.21273 1.21451 1.20478 1.22319 1.01497 0.91823 1.03069 1.23260 0.97333 1.01784 0.97702 1.22862 1.02738 0.94236 0.99824 1.21123 0.92918 0.95514 0.98521 0.93573 0.88520 0.92331 0.89724 0.92420 0.82449 0.81918 0.84058 0.75742 0.89947 0.92724 0.89404 0.95890 0.97710 0.78759 0.93897 0.89771 0.88037 0.86759 0.87888 0.89081 0.86717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 11.01 113.37 1.25 1.59 16 2 O -0.41 -9.24 10.69 -148.98 -1.59 -10.83 16 3 C 0.10 2.18 6.06 71.24 0.43 2.62 16 4 C -0.11 -2.85 5.50 -19.90 -0.11 -2.96 16 5 C -0.07 -1.54 9.69 22.33 0.22 -1.32 16 6 C -0.13 -2.64 10.03 22.23 0.22 -2.42 16 7 C -0.08 -2.13 9.54 22.53 0.21 -1.91 16 8 C -0.15 -5.05 5.87 -20.09 -0.12 -5.17 16 9 C 0.56 21.28 7.18 86.79 0.62 21.91 16 10 O -0.57 -25.51 13.17 -3.91 -0.05 -25.56 16 11 N -0.70 -23.24 4.66 -425.75 -1.98 -25.22 16 12 C 0.21 7.16 0.54 3.61 0.00 7.17 16 13 C -0.15 -4.19 7.04 71.98 0.51 -3.68 16 14 C 0.15 6.76 5.02 86.38 0.43 7.20 16 15 N -0.73 -38.09 5.18 -343.46 -1.78 -39.87 16 16 C -0.25 -14.55 9.99 84.04 0.84 -13.72 16 17 H 0.06 3.58 7.83 -2.91 -0.02 3.55 16 18 C -0.07 -3.81 5.50 84.86 0.47 -3.34 16 19 N -0.96 -57.82 13.06 21.65 0.28 -57.54 16 20 Si 0.97 47.29 29.55 68.60 2.03 49.32 16 21 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 22 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 23 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 24 C -0.17 -5.21 4.05 -10.79 -0.04 -5.25 16 25 C -0.16 -3.80 9.61 30.59 0.29 -3.51 16 26 C -0.16 -3.86 9.81 30.60 0.30 -3.56 16 27 C -0.06 -1.97 9.24 22.53 0.21 -1.76 16 28 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 29 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 30 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.08 1.31 8.08 -2.39 -0.02 1.29 16 32 H 0.06 1.21 8.08 -2.39 -0.02 1.19 16 33 H 0.16 2.22 8.06 -2.91 -0.02 2.20 16 34 H 0.16 2.32 8.06 -2.91 -0.02 2.29 16 35 H 0.14 3.18 6.42 -2.91 -0.02 3.16 16 36 H 0.41 11.42 6.53 -92.71 -0.61 10.81 16 37 H 0.08 2.25 6.84 -2.39 -0.02 2.23 16 38 H 0.05 1.81 6.86 -2.39 -0.02 1.80 16 39 H 0.09 1.91 7.01 -2.39 -0.02 1.89 16 40 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.00 0.26 6.63 -2.39 -0.02 0.24 16 42 H 0.38 20.00 6.35 -92.71 -0.59 19.42 16 43 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 44 H 0.08 3.16 7.18 -2.39 -0.02 3.15 16 45 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 46 H 0.11 2.35 5.87 -2.39 -0.01 2.34 16 47 H 0.10 2.22 7.42 -2.39 -0.02 2.20 16 48 H 0.09 2.14 8.14 -2.38 -0.02 2.12 16 49 H 0.11 3.97 7.65 -2.91 -0.02 3.95 16 Total: -1.00 -75.75 395.35 2.42 -73.33 By element: Atomic # 1 Polarization: 44.71 SS G_CDS: -0.22 Total: 44.48 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: 5.74 Total: -8.12 kcal Atomic # 7 Polarization: -119.15 SS G_CDS: -3.48 Total: -122.62 kcal Atomic # 8 Polarization: -34.75 SS G_CDS: -1.64 Total: -36.39 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 2.03 Total: 49.32 kcal Total: -75.75 2.42 -73.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568022724.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.919 kcal (2) G-P(sol) polarization free energy of solvation -75.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds