Wall clock time and date at job start Tue Mar 31 2020 16:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 114.00203 * 2 1 4 4 H 1.09003 * 109.46738 * 30.00461 * 3 2 1 5 5 C 1.50691 * 109.47370 * 150.00165 * 3 2 1 6 6 O 1.21285 * 119.99886 * 4.72597 * 5 3 2 7 7 N 1.34777 * 120.00185 * 184.99741 * 5 3 2 8 8 C 1.46500 * 119.99924 * 175.11397 * 7 5 3 9 9 C 1.53001 * 109.47329 * 303.87686 * 8 7 5 10 10 C 1.52994 * 109.47118 * 63.87793 * 8 7 5 11 11 N 1.46503 * 109.46938 * 59.99984 * 10 8 7 12 12 C 1.36941 * 120.00095 * 180.02562 * 11 10 8 13 13 H 1.08008 * 119.99527 * 359.97438 * 12 11 10 14 14 C 1.38813 * 120.00218 * 179.97438 * 12 11 10 15 15 N 1.31617 * 119.99641 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 119.99948 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47390 * 90.00244 * 16 14 12 18 18 H 1.48499 * 109.47076 * 210.00114 * 16 14 12 19 19 H 1.48507 * 109.47343 * 330.00021 * 16 14 12 20 20 C 1.52999 * 109.47034 * 183.87928 * 8 7 5 21 21 C 1.53005 * 117.50137 * 132.46759 * 20 8 7 22 22 C 1.52998 * 117.50186 * 63.80501 * 20 8 7 23 23 C 1.50700 * 109.47074 * 270.00494 * 3 2 1 24 24 C 1.38231 * 120.00036 * 324.72347 * 23 3 2 25 25 C 1.38236 * 119.99817 * 179.81152 * 24 23 3 26 26 C 1.38239 * 120.00123 * 0.39953 * 25 24 23 27 27 C 1.38225 * 119.99927 * 359.85303 * 26 25 24 28 28 C 1.38238 * 120.00177 * 359.95736 * 27 26 25 29 29 H 1.09001 * 109.47340 * 59.99785 * 1 2 3 30 30 H 1.09005 * 109.47103 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46865 * 299.99869 * 1 2 3 32 32 H 0.96997 * 120.00210 * 355.12707 * 7 5 3 33 33 H 1.09005 * 109.47000 * 60.00391 * 9 8 7 34 34 H 1.09005 * 109.47397 * 179.97438 * 9 8 7 35 35 H 1.09000 * 109.47427 * 299.99767 * 9 8 7 36 36 H 1.09005 * 109.47176 * 179.97438 * 10 8 7 37 37 H 1.08998 * 109.47611 * 300.00020 * 10 8 7 38 38 H 0.96994 * 119.99916 * 359.97438 * 11 10 8 39 39 H 0.97001 * 119.99641 * 180.02562 * 15 14 12 40 40 H 1.09005 * 115.54910 * 278.13561 * 20 8 7 41 41 H 1.08996 * 117.49581 * 359.97438 * 21 20 8 42 42 H 1.08997 * 117.50207 * 145.02040 * 21 20 8 43 43 H 1.08998 * 117.50261 * 214.98117 * 22 20 8 44 44 H 1.08998 * 117.49538 * 0.02562 * 22 20 8 45 45 H 1.07996 * 120.00086 * 0.02562 * 24 23 3 46 46 H 1.08008 * 120.00279 * 180.23173 * 25 24 23 47 47 H 1.08001 * 119.99695 * 179.83960 * 26 25 24 48 48 H 1.07999 * 120.00517 * 179.97438 * 27 26 25 49 49 H 1.08003 * 120.00170 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9993 0.5139 5 6 3.3386 1.2639 0.7103 6 8 3.7874 0.2051 1.0957 7 7 4.0255 2.4040 0.9222 8 6 5.2633 2.3786 1.7055 9 6 4.9841 1.7694 3.0810 10 6 6.3106 1.5343 0.9769 11 7 6.5780 2.1176 -0.3401 12 6 7.4872 1.5289 -1.1780 13 1 8.0074 0.6346 -0.8677 14 6 7.7401 2.0813 -2.4261 15 7 7.1065 3.1712 -2.8039 16 14 8.9798 1.2777 -3.5692 17 1 8.2892 0.2804 -4.4260 18 1 9.6084 2.3152 -4.4257 19 1 10.0273 0.5986 -2.7649 20 6 5.7878 3.8056 1.8768 21 6 6.2085 4.2398 3.2823 22 6 4.9191 4.7877 2.6653 23 6 2.2145 1.7644 -1.4208 24 6 2.5649 0.8519 -2.3983 25 6 2.7484 1.2723 -3.7023 26 6 2.5896 2.6065 -4.0273 27 6 2.2443 3.5198 -3.0489 28 6 2.0569 3.0988 -1.7455 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.7002 3.2413 0.5563 33 1 4.6104 0.7527 2.9590 34 1 5.9051 1.7501 3.6636 35 1 4.2379 2.3710 3.6001 36 1 7.2318 1.5157 1.5595 37 1 5.9370 0.5176 0.8549 38 1 6.1105 2.9204 -0.6189 39 1 7.2830 3.5570 -3.6762 40 1 6.3580 4.2010 1.0361 41 1 6.1112 3.5090 4.0850 42 1 7.0552 4.9211 3.3663 43 1 4.9182 5.8292 2.3437 44 1 3.9742 4.4171 3.0625 45 1 2.6919 -0.1899 -2.1438 46 1 3.0186 0.5588 -4.4668 47 1 2.7355 2.9353 -5.0456 48 1 2.1206 4.5623 -3.3026 49 1 1.7875 3.8125 -0.9810 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568030486.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:16 Heat of formation + Delta-G solvation = -4.216693 kcal Electronic energy + Delta-G solvation = -30544.843445 eV Core-core repulsion = 26666.777346 eV Total energy + Delta-G solvation = -3878.066100 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -40.36363 -39.07376 -37.80938 -36.93130 -34.56052 -33.42428 -32.10661 -30.83824 -30.56401 -29.55023 -27.62965 -25.97413 -25.50281 -23.53726 -22.33152 -22.26568 -22.00630 -21.63482 -19.98635 -18.74055 -17.42351 -17.10341 -16.93090 -16.53794 -15.62544 -15.51542 -15.08291 -14.73524 -14.37790 -14.33543 -14.28356 -14.06465 -13.73652 -13.15957 -13.11596 -13.00679 -12.68387 -12.51883 -12.26144 -12.10751 -12.01748 -11.85076 -11.48011 -11.31382 -11.07785 -10.99539 -10.79177 -10.75138 -10.70111 -10.66900 -10.15326 -10.03237 -9.91300 -9.77505 -9.57927 -9.24014 -8.72577 -8.56552 -8.51531 -8.34368 -6.73901 -5.64522 -2.89763 1.57817 1.76314 2.98282 3.13593 3.49702 3.54950 3.56434 3.91994 4.07321 4.34310 4.69325 4.75465 4.82162 4.94783 5.06135 5.12797 5.20420 5.22236 5.29614 5.33239 5.36756 5.41909 5.46711 5.51507 5.61019 5.70800 5.73561 5.78526 5.82745 5.91696 5.99563 6.09227 6.22230 6.26020 6.28879 6.33668 6.35276 6.49142 6.62842 6.69884 6.74147 6.76375 6.87199 6.96701 7.12648 7.20464 7.30342 7.82656 7.97085 8.54340 8.68005 9.66145 10.24907 10.61294 11.58151 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.007656 B = 0.006351 C = 0.004333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3656.316858 B = 4407.546481 C = 6460.655215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.351 6.351 3 C 0.118 3.882 4 H 0.087 0.913 5 C 0.528 3.472 6 O -0.513 6.513 7 N -0.704 5.704 8 C 0.204 3.796 9 C -0.165 4.165 10 C 0.144 3.856 11 N -0.723 5.723 12 C -0.227 4.227 13 H 0.066 0.934 14 C -0.013 4.013 15 N -0.931 5.931 16 Si 0.900 3.100 17 H -0.292 1.292 18 H -0.293 1.293 19 H -0.284 1.284 20 C -0.149 4.149 21 C -0.172 4.172 22 C -0.183 4.183 23 C -0.116 4.116 24 C -0.077 4.077 25 C -0.113 4.113 26 C -0.104 4.104 27 C -0.115 4.115 28 C -0.110 4.110 29 H 0.043 0.957 30 H 0.088 0.912 31 H 0.041 0.959 32 H 0.396 0.604 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.051 0.949 36 H 0.022 0.978 37 H 0.044 0.956 38 H 0.382 0.618 39 H 0.251 0.749 40 H 0.122 0.878 41 H 0.099 0.901 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.124 0.876 46 H 0.119 0.881 47 H 0.118 0.882 48 H 0.120 0.880 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.946 2.982 7.249 16.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.268 6.268 3 C 0.056 3.944 4 H 0.104 0.896 5 C 0.312 3.688 6 O -0.388 6.388 7 N -0.356 5.356 8 C 0.119 3.881 9 C -0.223 4.223 10 C 0.016 3.984 11 N -0.367 5.367 12 C -0.359 4.359 13 H 0.084 0.916 14 C -0.209 4.209 15 N -0.581 5.581 16 Si 0.732 3.268 17 H -0.220 1.220 18 H -0.220 1.220 19 H -0.209 1.209 20 C -0.168 4.168 21 C -0.210 4.210 22 C -0.220 4.220 23 C -0.117 4.117 24 C -0.095 4.095 25 C -0.131 4.131 26 C -0.122 4.122 27 C -0.133 4.133 28 C -0.128 4.128 29 H 0.062 0.938 30 H 0.107 0.893 31 H 0.059 0.941 32 H 0.230 0.770 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.040 0.960 37 H 0.062 0.938 38 H 0.216 0.784 39 H 0.061 0.939 40 H 0.140 0.860 41 H 0.117 0.883 42 H 0.111 0.889 43 H 0.110 0.890 44 H 0.109 0.891 45 H 0.142 0.858 46 H 0.137 0.863 47 H 0.136 0.864 48 H 0.138 0.862 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -14.381 1.902 7.496 16.328 hybrid contribution 0.374 0.598 -1.197 1.389 sum -14.007 2.500 6.299 15.560 Atomic orbital electron populations 1.22857 0.81004 1.02961 0.99925 1.88056 1.19316 1.24748 1.94693 1.20731 0.94182 0.86480 0.92960 0.89579 1.19849 0.85426 0.84320 0.79167 1.90648 1.68597 1.29571 1.49942 1.45764 1.25063 1.09791 1.54982 1.20019 0.83935 0.93462 0.90675 1.22292 1.01624 1.02881 0.95495 1.21058 0.93587 0.96170 0.87604 1.42190 1.49538 1.31876 1.13085 1.19204 1.14245 1.06729 0.95712 0.91575 1.24616 1.00501 0.98073 0.97686 1.69651 1.45544 1.22160 1.20718 0.86279 0.81170 0.78192 0.81144 1.21996 1.22004 1.20938 1.22572 1.03593 0.94086 0.96502 1.23057 0.98234 1.03528 0.96146 1.22944 0.95119 0.98897 1.05085 1.19878 1.03274 0.94239 0.94326 1.20899 0.96260 0.99913 0.92388 1.21104 0.99388 0.96131 0.96476 1.21114 0.98242 0.93416 0.99391 1.20956 1.00089 0.99231 0.92991 1.20813 1.00989 0.94352 0.96692 0.93817 0.89305 0.94079 0.76972 0.90167 0.91529 0.93009 0.96010 0.93794 0.78413 0.93938 0.85980 0.88264 0.88907 0.88970 0.89078 0.85758 0.86296 0.86404 0.86234 0.86522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.81 101.05 1.09 1.40 16 2 O -0.35 -5.41 9.04 -55.10 -0.50 -5.91 16 3 C 0.12 1.75 2.73 -29.04 -0.08 1.67 16 4 H 0.09 0.99 7.70 -51.93 -0.40 0.59 16 5 C 0.53 9.42 6.58 -10.99 -0.07 9.35 16 6 O -0.51 -10.98 12.74 -14.31 -0.18 -11.16 16 7 N -0.70 -11.47 4.68 -47.61 -0.22 -11.70 16 8 C 0.20 3.47 0.54 -131.82 -0.07 3.40 16 9 C -0.16 -2.47 6.98 37.16 0.26 -2.21 16 10 C 0.14 3.17 5.02 -4.04 -0.02 3.15 16 11 N -0.72 -18.56 5.03 -59.91 -0.30 -18.87 16 12 C -0.23 -6.58 9.99 -15.06 -0.15 -6.73 16 13 H 0.07 1.92 7.83 -52.48 -0.41 1.50 16 14 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 15 N -0.93 -27.92 13.06 55.49 0.72 -27.20 16 16 Si 0.90 23.15 29.55 -169.99 -5.02 18.13 16 17 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 18 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 19 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 20 C -0.15 -2.29 4.84 -90.62 -0.44 -2.73 16 21 C -0.17 -2.17 9.63 -26.69 -0.26 -2.43 16 22 C -0.18 -2.18 9.81 -26.69 -0.26 -2.45 16 23 C -0.12 -1.82 4.88 -104.62 -0.51 -2.33 16 24 C -0.08 -1.33 9.35 -39.58 -0.37 -1.70 16 25 C -0.11 -1.87 10.05 -39.58 -0.40 -2.27 16 26 C -0.10 -1.61 10.05 -39.59 -0.40 -2.00 16 27 C -0.11 -1.66 10.05 -39.59 -0.40 -2.05 16 28 C -0.11 -1.54 9.38 -39.58 -0.37 -1.91 16 29 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.04 0.36 8.09 -51.93 -0.42 -0.06 16 32 H 0.40 5.81 8.13 -40.82 -0.33 5.48 16 33 H 0.08 1.38 6.05 -51.93 -0.31 1.06 16 34 H 0.07 0.92 6.80 -51.93 -0.35 0.57 16 35 H 0.05 0.67 6.99 -51.93 -0.36 0.31 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.04 1.09 6.30 -51.93 -0.33 0.76 16 38 H 0.38 10.06 6.63 -40.82 -0.27 9.79 16 39 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 40 H 0.12 2.27 7.09 -51.93 -0.37 1.90 16 41 H 0.10 1.17 5.88 -51.93 -0.31 0.86 16 42 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.09 1.00 7.36 -51.93 -0.38 0.62 16 45 H 0.12 2.25 7.64 -52.49 -0.40 1.85 16 46 H 0.12 1.80 8.06 -52.48 -0.42 1.37 16 47 H 0.12 1.60 8.06 -52.49 -0.42 1.17 16 48 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 49 H 0.12 1.27 8.06 -52.48 -0.42 0.84 16 LS Contribution 395.34 15.07 5.96 5.96 Total: -1.00 -34.06 395.34 -9.67 -43.73 By element: Atomic # 1 Polarization: 24.93 SS G_CDS: -7.59 Total: 17.34 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: -2.54 Total: -10.33 kcal Atomic # 7 Polarization: -57.96 SS G_CDS: 0.20 Total: -57.76 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.68 Total: -17.07 kcal Atomic # 14 Polarization: 23.15 SS G_CDS: -5.02 Total: 18.13 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.06 -9.67 -43.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568030486.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.517 kcal (2) G-P(sol) polarization free energy of solvation -34.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds