Wall clock time and date at job start Tue Mar 31 2020 16:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 114.00203 * 2 1 4 4 H 1.09003 * 109.46738 * 30.00461 * 3 2 1 5 5 C 1.50691 * 109.47370 * 150.00165 * 3 2 1 6 6 O 1.21285 * 119.99886 * 4.72597 * 5 3 2 7 7 N 1.34777 * 120.00185 * 184.99741 * 5 3 2 8 8 C 1.46500 * 119.99924 * 175.11397 * 7 5 3 9 9 C 1.53001 * 109.47329 * 303.87686 * 8 7 5 10 10 C 1.52994 * 109.47118 * 63.87793 * 8 7 5 11 11 N 1.46503 * 109.46938 * 59.99984 * 10 8 7 12 12 C 1.36941 * 120.00095 * 180.02562 * 11 10 8 13 13 H 1.08008 * 119.99527 * 359.97438 * 12 11 10 14 14 C 1.38813 * 120.00218 * 179.97438 * 12 11 10 15 15 N 1.31617 * 119.99641 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 119.99948 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47390 * 90.00244 * 16 14 12 18 18 H 1.48499 * 109.47076 * 210.00114 * 16 14 12 19 19 H 1.48507 * 109.47343 * 330.00021 * 16 14 12 20 20 C 1.52999 * 109.47034 * 183.87928 * 8 7 5 21 21 C 1.53005 * 117.50137 * 132.46759 * 20 8 7 22 22 C 1.52998 * 117.50186 * 63.80501 * 20 8 7 23 23 C 1.50700 * 109.47074 * 270.00494 * 3 2 1 24 24 C 1.38231 * 120.00036 * 324.72347 * 23 3 2 25 25 C 1.38236 * 119.99817 * 179.81152 * 24 23 3 26 26 C 1.38239 * 120.00123 * 0.39953 * 25 24 23 27 27 C 1.38225 * 119.99927 * 359.85303 * 26 25 24 28 28 C 1.38238 * 120.00177 * 359.95736 * 27 26 25 29 29 H 1.09001 * 109.47340 * 59.99785 * 1 2 3 30 30 H 1.09005 * 109.47103 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46865 * 299.99869 * 1 2 3 32 32 H 0.96997 * 120.00210 * 355.12707 * 7 5 3 33 33 H 1.09005 * 109.47000 * 60.00391 * 9 8 7 34 34 H 1.09005 * 109.47397 * 179.97438 * 9 8 7 35 35 H 1.09000 * 109.47427 * 299.99767 * 9 8 7 36 36 H 1.09005 * 109.47176 * 179.97438 * 10 8 7 37 37 H 1.08998 * 109.47611 * 300.00020 * 10 8 7 38 38 H 0.96994 * 119.99916 * 359.97438 * 11 10 8 39 39 H 0.97001 * 119.99641 * 180.02562 * 15 14 12 40 40 H 1.09005 * 115.54910 * 278.13561 * 20 8 7 41 41 H 1.08996 * 117.49581 * 359.97438 * 21 20 8 42 42 H 1.08997 * 117.50207 * 145.02040 * 21 20 8 43 43 H 1.08998 * 117.50261 * 214.98117 * 22 20 8 44 44 H 1.08998 * 117.49538 * 0.02562 * 22 20 8 45 45 H 1.07996 * 120.00086 * 0.02562 * 24 23 3 46 46 H 1.08008 * 120.00279 * 180.23173 * 25 24 23 47 47 H 1.08001 * 119.99695 * 179.83960 * 26 25 24 48 48 H 1.07999 * 120.00517 * 179.97438 * 27 26 25 49 49 H 1.08003 * 120.00170 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9993 0.5139 5 6 3.3386 1.2639 0.7103 6 8 3.7874 0.2051 1.0957 7 7 4.0255 2.4040 0.9222 8 6 5.2633 2.3786 1.7055 9 6 4.9841 1.7694 3.0810 10 6 6.3106 1.5343 0.9769 11 7 6.5780 2.1176 -0.3401 12 6 7.4872 1.5289 -1.1780 13 1 8.0074 0.6346 -0.8677 14 6 7.7401 2.0813 -2.4261 15 7 7.1065 3.1712 -2.8039 16 14 8.9798 1.2777 -3.5692 17 1 8.2892 0.2804 -4.4260 18 1 9.6084 2.3152 -4.4257 19 1 10.0273 0.5986 -2.7649 20 6 5.7878 3.8056 1.8768 21 6 6.2085 4.2398 3.2823 22 6 4.9191 4.7877 2.6653 23 6 2.2145 1.7644 -1.4208 24 6 2.5649 0.8519 -2.3983 25 6 2.7484 1.2723 -3.7023 26 6 2.5896 2.6065 -4.0273 27 6 2.2443 3.5198 -3.0489 28 6 2.0569 3.0988 -1.7455 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.7002 3.2413 0.5563 33 1 4.6104 0.7527 2.9590 34 1 5.9051 1.7501 3.6636 35 1 4.2379 2.3710 3.6001 36 1 7.2318 1.5157 1.5595 37 1 5.9370 0.5176 0.8549 38 1 6.1105 2.9204 -0.6189 39 1 7.2830 3.5570 -3.6762 40 1 6.3580 4.2010 1.0361 41 1 6.1112 3.5090 4.0850 42 1 7.0552 4.9211 3.3663 43 1 4.9182 5.8292 2.3437 44 1 3.9742 4.4171 3.0625 45 1 2.6919 -0.1899 -2.1438 46 1 3.0186 0.5588 -4.4668 47 1 2.7355 2.9353 -5.0456 48 1 2.1206 4.5623 -3.3026 49 1 1.7875 3.8125 -0.9810 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568030486.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:15 Heat of formation + Delta-G solvation = -25.436874 kcal Electronic energy + Delta-G solvation = -30545.763621 eV Core-core repulsion = 26666.777346 eV Total energy + Delta-G solvation = -3878.986276 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.66700 -40.27904 -39.02862 -38.09796 -36.32150 -35.00535 -33.51217 -32.58126 -31.75212 -31.05838 -28.67956 -27.57324 -26.72571 -25.05868 -24.07819 -23.45355 -23.13269 -22.82640 -21.21407 -20.14926 -19.20722 -18.65751 -18.10757 -17.65701 -16.88829 -16.76736 -16.64490 -16.12616 -15.98510 -15.55428 -15.40026 -15.36228 -15.29083 -14.91615 -14.36090 -14.24169 -14.09009 -13.80822 -13.66202 -13.60309 -13.27520 -13.15037 -13.04913 -12.81924 -12.47709 -12.41544 -12.21310 -12.14882 -12.02267 -11.99684 -11.85557 -11.72537 -11.22321 -11.05731 -10.98729 -10.87202 -10.46836 -9.94024 -9.76730 -9.59160 -8.88994 -7.90898 -5.15834 0.37854 0.55189 1.41925 1.43619 1.51288 1.66119 1.92485 2.55428 2.82355 2.95147 3.22234 3.40900 3.61912 3.63728 3.84111 3.87982 3.97309 3.98625 4.12728 4.18633 4.20717 4.27885 4.29013 4.49302 4.52046 4.56455 4.63282 4.66822 4.73373 4.81736 4.84354 4.88487 4.91085 5.00513 5.05531 5.06232 5.14739 5.15427 5.30826 5.36230 5.46726 5.50052 5.52580 5.58363 5.65825 5.70015 6.09026 6.13502 6.30617 6.68513 7.35241 7.38728 8.13186 8.43179 9.30987 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.007656 B = 0.006351 C = 0.004333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3656.316858 B = 4407.546481 C = 6460.655215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.384 6.384 3 C 0.125 3.875 4 H 0.129 0.871 5 C 0.519 3.481 6 O -0.557 6.557 7 N -0.695 5.695 8 C 0.213 3.787 9 C -0.155 4.155 10 C 0.145 3.855 11 N -0.723 5.723 12 C -0.245 4.245 13 H 0.056 0.944 14 C -0.060 4.060 15 N -0.951 5.951 16 Si 0.959 3.041 17 H -0.294 1.294 18 H -0.288 1.288 19 H -0.277 1.277 20 C -0.176 4.176 21 C -0.164 4.164 22 C -0.152 4.152 23 C -0.121 4.121 24 C -0.105 4.105 25 C -0.135 4.135 26 C -0.118 4.118 27 C -0.119 4.119 28 C -0.107 4.107 29 H 0.050 0.950 30 H 0.098 0.902 31 H 0.064 0.936 32 H 0.406 0.594 33 H 0.055 0.945 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.016 0.984 37 H 0.011 0.989 38 H 0.378 0.622 39 H 0.249 0.751 40 H 0.086 0.914 41 H 0.112 0.888 42 H 0.098 0.902 43 H 0.106 0.894 44 H 0.110 0.890 45 H 0.101 0.899 46 H 0.120 0.880 47 H 0.133 0.867 48 H 0.149 0.851 49 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.330 5.377 8.601 19.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.302 6.302 3 C 0.064 3.936 4 H 0.146 0.854 5 C 0.305 3.695 6 O -0.435 6.435 7 N -0.347 5.347 8 C 0.127 3.873 9 C -0.213 4.213 10 C 0.018 3.982 11 N -0.366 5.366 12 C -0.377 4.377 13 H 0.074 0.926 14 C -0.253 4.253 15 N -0.601 5.601 16 Si 0.789 3.211 17 H -0.221 1.221 18 H -0.215 1.215 19 H -0.202 1.202 20 C -0.195 4.195 21 C -0.201 4.201 22 C -0.189 4.189 23 C -0.122 4.122 24 C -0.124 4.124 25 C -0.153 4.153 26 C -0.136 4.136 27 C -0.137 4.137 28 C -0.124 4.124 29 H 0.069 0.931 30 H 0.116 0.884 31 H 0.082 0.918 32 H 0.242 0.758 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.034 0.966 37 H 0.029 0.971 38 H 0.211 0.789 39 H 0.058 0.942 40 H 0.104 0.896 41 H 0.130 0.870 42 H 0.116 0.884 43 H 0.124 0.876 44 H 0.128 0.872 45 H 0.119 0.881 46 H 0.138 0.862 47 H 0.151 0.849 48 H 0.166 0.834 49 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -15.779 4.313 8.861 18.604 hybrid contribution 0.814 -0.182 -1.620 1.822 sum -14.965 4.131 7.240 17.130 Atomic orbital electron populations 1.23090 0.78634 1.04197 1.01320 1.88025 1.21987 1.25382 1.94804 1.20734 0.93222 0.87354 0.92338 0.85386 1.20529 0.86458 0.83873 0.78621 1.90631 1.69895 1.31164 1.51834 1.45737 1.24430 1.09951 1.54540 1.19830 0.82709 0.93853 0.90886 1.22207 1.02913 1.01743 0.94445 1.21080 0.95023 0.95565 0.86572 1.42191 1.48838 1.31560 1.14009 1.19447 1.14929 1.06642 0.96700 0.92571 1.25273 1.02364 0.98816 0.98869 1.69767 1.46521 1.22975 1.20849 0.85367 0.79236 0.77329 0.79203 1.22148 1.21464 1.20212 1.22231 1.06402 0.93757 0.97150 1.23190 0.99172 1.03525 0.94252 1.23055 0.95315 0.98535 1.01957 1.20043 1.03043 0.94815 0.94297 1.20914 0.98342 0.99509 0.93592 1.21268 1.00394 0.97201 0.96443 1.21418 0.98315 0.93076 1.00779 1.21399 0.98878 1.00438 0.92942 1.21249 0.99484 0.94104 0.97600 0.93138 0.88365 0.91758 0.75798 0.92623 0.90457 0.89998 0.96624 0.97087 0.78851 0.94161 0.89604 0.87004 0.88351 0.87587 0.87162 0.88068 0.86239 0.84888 0.83359 0.82550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 10.81 113.37 1.23 1.69 16 2 O -0.38 -11.81 9.04 -129.98 -1.18 -12.99 16 3 C 0.12 3.57 2.73 29.10 0.08 3.64 16 4 H 0.13 2.49 7.70 -2.39 -0.02 2.47 16 5 C 0.52 18.50 6.58 87.65 0.58 19.08 16 6 O -0.56 -24.76 12.74 15.95 0.20 -24.55 16 7 N -0.69 -21.99 4.68 -422.94 -1.98 -23.97 16 8 C 0.21 7.12 0.54 3.60 0.00 7.13 16 9 C -0.16 -4.43 6.98 71.98 0.50 -3.93 16 10 C 0.15 6.64 5.02 86.38 0.43 7.08 16 11 N -0.72 -38.34 5.03 -343.44 -1.73 -40.07 16 12 C -0.24 -14.59 9.99 84.03 0.84 -13.75 16 13 H 0.06 3.38 7.83 -2.91 -0.02 3.36 16 14 C -0.06 -3.54 5.50 84.86 0.47 -3.07 16 15 N -0.95 -57.54 13.06 21.65 0.28 -57.26 16 16 Si 0.96 48.25 29.55 68.60 2.03 50.28 16 17 H -0.29 -14.80 7.11 99.48 0.71 -14.10 16 18 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 19 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 20 C -0.18 -5.18 4.84 -10.79 -0.05 -5.23 16 21 C -0.16 -3.66 9.63 30.62 0.30 -3.37 16 22 C -0.15 -3.02 9.81 30.62 0.30 -2.72 16 23 C -0.12 -3.72 4.88 -19.87 -0.10 -3.82 16 24 C -0.11 -3.82 9.35 22.27 0.21 -3.61 16 25 C -0.13 -4.66 10.05 22.27 0.22 -4.44 16 26 C -0.12 -3.61 10.05 22.27 0.22 -3.39 16 27 C -0.12 -3.18 10.05 22.27 0.22 -2.96 16 28 C -0.11 -2.72 9.38 22.27 0.21 -2.51 16 29 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.10 1.70 8.14 -2.38 -0.02 1.68 16 31 H 0.06 0.96 8.09 -2.39 -0.02 0.94 16 32 H 0.41 11.05 8.13 -92.71 -0.75 10.30 16 33 H 0.05 1.91 6.05 -2.38 -0.01 1.89 16 34 H 0.08 2.01 6.80 -2.38 -0.02 2.00 16 35 H 0.08 1.84 6.99 -2.39 -0.02 1.82 16 36 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 37 H 0.01 0.59 6.30 -2.39 -0.02 0.57 16 38 H 0.38 20.42 6.63 -92.71 -0.61 19.80 16 39 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 40 H 0.09 3.20 7.09 -2.38 -0.02 3.18 16 41 H 0.11 2.23 5.88 -2.39 -0.01 2.21 16 42 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.11 1.83 7.36 -2.39 -0.02 1.81 16 45 H 0.10 4.01 7.64 -2.91 -0.02 3.99 16 46 H 0.12 3.87 8.06 -2.91 -0.02 3.85 16 47 H 0.13 3.52 8.06 -2.91 -0.02 3.50 16 48 H 0.15 3.07 8.06 -2.91 -0.02 3.04 16 49 H 0.16 2.67 8.06 -2.91 -0.02 2.65 16 Total: -1.00 -77.54 395.34 2.89 -74.65 By element: Atomic # 1 Polarization: 48.49 SS G_CDS: -0.40 Total: 48.08 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: 5.66 Total: -14.18 kcal Atomic # 7 Polarization: -117.87 SS G_CDS: -3.43 Total: -121.30 kcal Atomic # 8 Polarization: -36.57 SS G_CDS: -0.97 Total: -37.54 kcal Atomic # 14 Polarization: 48.25 SS G_CDS: 2.03 Total: 50.28 kcal Total: -77.54 2.89 -74.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568030486.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.218 kcal (2) G-P(sol) polarization free energy of solvation -77.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds