Wall clock time and date at job start Tue Mar 31 2020 16:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47605 * 2 1 4 4 N 1.46501 * 109.47010 * 120.00267 * 2 1 3 5 5 C 1.46500 * 120.00536 * 121.73617 * 4 2 1 6 6 C 1.52997 * 109.47392 * 270.00101 * 5 4 2 7 7 N 1.46502 * 109.47293 * 179.97438 * 6 5 4 8 8 C 1.46498 * 119.99966 * 270.00085 * 7 6 5 9 9 C 1.36930 * 119.99669 * 89.99953 * 7 6 5 10 10 H 1.08001 * 120.00326 * 32.92614 * 9 7 6 11 11 C 1.38816 * 119.99952 * 212.92033 * 9 7 6 12 12 N 1.31618 * 119.99752 * 5.85889 * 11 9 7 13 13 Si 1.86794 * 120.00252 * 185.85810 * 11 9 7 14 14 H 1.48500 * 109.47238 * 60.00158 * 13 11 9 15 15 H 1.48502 * 109.47394 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47161 * 300.00332 * 13 11 9 17 17 C 1.34784 * 119.99886 * 301.73754 * 4 2 1 18 18 O 1.21581 * 119.99760 * 212.26906 * 17 4 2 19 19 C 1.47599 * 119.99825 * 32.26878 * 17 4 2 20 20 C 1.39749 * 120.26886 * 317.36437 * 19 17 4 21 21 C 1.37467 * 120.20477 * 180.22094 * 20 19 17 22 22 C 1.39595 * 120.43433 * 0.02562 * 21 20 19 23 23 C 1.39278 * 119.08362 * 359.59678 * 22 21 20 24 24 C 1.37236 * 120.92326 * 0.61160 * 23 22 21 25 25 C 1.51674 * 106.94286 * 180.58828 * 23 22 21 26 26 C 1.54705 * 101.91102 * 15.73647 * 25 23 22 27 27 O 1.35984 * 129.71322 * 179.57688 * 22 21 20 28 28 H 1.08992 * 109.47201 * 253.48791 * 1 2 3 29 29 H 1.08998 * 109.46670 * 13.48404 * 1 2 3 30 30 H 1.09001 * 109.46728 * 133.48298 * 1 2 3 31 31 H 1.09000 * 109.46979 * 239.99759 * 2 1 3 32 32 H 1.08997 * 109.47392 * 223.59730 * 3 2 1 33 33 H 1.09004 * 109.46924 * 343.60083 * 3 2 1 34 34 H 1.08998 * 109.47225 * 103.59726 * 3 2 1 35 35 H 1.09001 * 109.46783 * 30.00314 * 5 4 2 36 36 H 1.08998 * 109.47507 * 149.99530 * 5 4 2 37 37 H 1.09001 * 109.47330 * 299.99878 * 6 5 4 38 38 H 1.09003 * 109.47072 * 59.99695 * 6 5 4 39 39 H 1.09003 * 109.47073 * 94.75214 * 8 7 6 40 40 H 1.08995 * 109.47040 * 214.75292 * 8 7 6 41 41 H 1.09001 * 109.47443 * 334.75555 * 8 7 6 42 42 H 0.97004 * 120.00138 * 179.97438 * 12 11 9 43 43 H 1.08002 * 119.90250 * 0.20244 * 20 19 17 44 44 H 1.08008 * 119.78441 * 179.97438 * 21 20 19 45 45 H 1.07997 * 120.04616 * 179.57026 * 24 23 22 46 46 H 1.08989 * 110.95171 * 257.57081 * 25 23 22 47 47 H 1.08996 * 110.94214 * 133.89829 * 25 23 22 48 48 H 1.09004 * 110.73703 * 92.89166 * 26 25 23 49 49 H 1.08994 * 110.73959 * 216.04069 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.8917 -1.8592 1.0622 6 6 2.0391 -3.1276 0.9902 7 7 2.9125 -4.2961 0.8556 8 6 3.2972 -4.7737 -0.4748 9 6 3.3692 -4.9418 1.9734 10 1 2.7525 -4.9908 2.8587 11 6 4.6250 -5.5335 1.9687 12 7 5.4226 -5.3763 0.9337 13 14 5.1826 -6.5528 3.4314 14 1 4.2500 -7.6921 3.6252 15 1 6.5518 -7.0705 3.1809 16 1 5.1896 -5.7059 4.6511 17 6 1.6640 -0.2510 2.4200 18 8 2.4328 -0.3693 3.3545 19 6 0.3428 0.3740 2.6257 20 6 -0.1570 1.2876 1.6938 21 6 -1.3857 1.8724 1.8890 22 6 -2.1456 1.5612 3.0179 23 6 -1.6454 0.6439 3.9389 24 6 -0.4181 0.0579 3.7552 25 6 -2.6868 0.5031 5.0326 26 6 -3.9352 1.1293 4.3674 27 8 -3.3650 2.0263 3.3997 28 1 -0.3633 -0.2921 0.9852 29 1 -0.3632 0.9993 -0.2396 30 1 -0.3633 -0.7072 -0.7457 31 1 1.8933 -0.5139 -0.8900 32 1 2.8629 1.5369 -0.7086 33 1 1.2318 2.1136 -0.2902 34 1 2.3890 1.7044 0.9988 35 1 3.4841 -1.7675 0.1518 36 1 3.5565 -1.9167 1.9240 37 1 1.4467 -3.2193 1.9005 38 1 1.3743 -3.0701 0.1283 39 1 4.2595 -4.3428 -0.7514 40 1 3.3761 -5.8607 -0.4619 41 1 2.5422 -4.4728 -1.2013 42 1 6.3003 -5.7895 0.9306 43 1 0.4239 1.5353 0.8176 44 1 -1.7653 2.5779 1.1646 45 1 -0.0410 -0.6463 4.4820 46 1 -2.3966 1.0631 5.9215 47 1 -2.8587 -0.5458 5.2741 48 1 -4.5362 0.3635 3.8768 49 1 -4.5303 1.6746 5.0998 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571614331.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:33 Heat of formation + Delta-G solvation = 69.418312 kcal Electronic energy + Delta-G solvation = -29666.696349 eV Core-core repulsion = 25791.823303 eV Total energy + Delta-G solvation = -3874.873046 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.73271 -40.43873 -37.53867 -36.66262 -35.52185 -33.27959 -32.33381 -31.05440 -30.49951 -29.40775 -27.89919 -27.14783 -25.81389 -24.62723 -23.52351 -22.50583 -22.33045 -21.87229 -20.41625 -18.76347 -17.72702 -16.99587 -16.82092 -16.63335 -16.45173 -15.73514 -15.26170 -14.92747 -14.63495 -14.37376 -14.12141 -13.90660 -13.66543 -13.60001 -13.35656 -13.18080 -12.94835 -12.59618 -12.52128 -12.33501 -12.24378 -12.18639 -11.92826 -11.62255 -11.49895 -11.25300 -11.17489 -10.84087 -10.79436 -10.73504 -10.51409 -10.21388 -10.13161 -10.02846 -9.74875 -9.62576 -8.86472 -8.54868 -8.29279 -8.02787 -6.59999 -5.71762 -3.27882 0.88994 1.22839 2.75352 2.97873 3.24838 3.42661 3.46259 3.48639 3.59929 4.19861 4.34490 4.52856 4.58958 4.62905 4.68331 4.72452 4.81001 4.93020 5.02808 5.13340 5.23522 5.38165 5.44169 5.45377 5.48199 5.49509 5.52006 5.57206 5.68003 5.80577 5.84527 5.91020 5.97807 6.00089 6.14264 6.20149 6.24977 6.31361 6.32285 6.37237 6.68514 6.73856 6.86806 6.94405 7.15426 7.30598 7.71959 7.75797 7.84928 8.38686 8.49119 9.26524 9.85760 10.39607 11.31728 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.014995 B = 0.003214 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.779259 B = 8710.570390 C = 9737.669686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.135 3.865 3 C -0.181 4.181 4 N -0.621 5.621 5 C 0.097 3.903 6 C 0.143 3.857 7 N -0.595 5.595 8 C 0.158 3.842 9 C -0.261 4.261 10 H 0.063 0.937 11 C 0.012 3.988 12 N -0.904 5.904 13 Si 0.903 3.097 14 H -0.283 1.283 15 H -0.290 1.290 16 H -0.280 1.280 17 C 0.575 3.425 18 O -0.518 6.518 19 C -0.182 4.182 20 C -0.051 4.051 21 C -0.179 4.179 22 C 0.134 3.866 23 C -0.202 4.202 24 C -0.008 4.008 25 C -0.107 4.107 26 C 0.051 3.949 27 O -0.305 6.305 28 H 0.099 0.901 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.097 0.903 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.086 0.914 37 H 0.040 0.960 38 H 0.035 0.965 39 H 0.034 0.966 40 H 0.036 0.964 41 H -0.002 1.002 42 H 0.254 0.746 43 H 0.181 0.819 44 H 0.131 0.869 45 H 0.131 0.869 46 H 0.089 0.911 47 H 0.092 0.908 48 H 0.078 0.922 49 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.111 16.106 -0.760 23.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C 0.030 3.970 3 C -0.239 4.239 4 N -0.356 5.356 5 C -0.027 4.027 6 C 0.015 3.985 7 N -0.318 5.318 8 C 0.014 3.986 9 C -0.391 4.391 10 H 0.081 0.919 11 C -0.187 4.187 12 N -0.547 5.547 13 Si 0.733 3.267 14 H -0.209 1.209 15 H -0.216 1.216 16 H -0.207 1.207 17 C 0.363 3.637 18 O -0.393 6.393 19 C -0.186 4.186 20 C -0.068 4.068 21 C -0.198 4.198 22 C 0.088 3.912 23 C -0.203 4.203 24 C -0.027 4.027 25 C -0.144 4.144 26 C -0.023 4.023 27 O -0.218 6.218 28 H 0.117 0.883 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.115 0.885 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.105 0.895 37 H 0.059 0.941 38 H 0.054 0.946 39 H 0.052 0.948 40 H 0.055 0.945 41 H 0.017 0.983 42 H 0.064 0.936 43 H 0.197 0.803 44 H 0.149 0.851 45 H 0.149 0.851 46 H 0.108 0.892 47 H 0.111 0.889 48 H 0.096 0.904 49 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -16.623 16.106 -0.369 23.149 hybrid contribution 0.392 -0.736 0.831 1.177 sum -16.232 15.370 0.463 22.359 Atomic orbital electron populations 1.23795 0.95726 1.02231 1.04561 1.21116 0.93804 0.92908 0.89166 1.22704 1.01854 0.95753 1.03590 1.47958 1.51779 1.31655 1.04180 1.22659 0.93564 0.83294 1.03166 1.21201 0.92540 0.86235 0.98532 1.43815 1.57190 1.27717 1.03104 1.20847 0.95874 0.98158 0.83739 1.19089 0.97273 1.29658 0.93090 0.91889 1.25282 0.95476 1.00661 0.97317 1.69978 1.08763 1.46288 1.29671 0.86363 0.77576 0.80101 0.82675 1.20931 1.21559 1.20657 1.17995 0.85414 0.77341 0.82921 1.90783 1.51709 1.54181 1.42637 1.19918 0.97102 1.03654 0.97921 1.22703 0.95215 0.91417 0.97441 1.20050 0.95994 1.06404 0.97310 1.19839 0.85580 0.92393 0.93394 1.20526 0.97806 1.03873 0.98115 1.20218 0.91126 0.96438 0.94908 1.21749 0.92225 1.03075 0.97361 1.23851 0.95741 0.92573 0.90181 1.86763 1.29684 1.46863 1.58533 0.88262 0.90574 0.92143 0.88451 0.91137 0.90913 0.91401 0.91425 0.89543 0.94129 0.94620 0.94782 0.94499 0.98303 0.93609 0.80254 0.85099 0.85064 0.89224 0.88938 0.90389 0.87605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.08 7.72 37.16 0.29 -1.79 16 2 C 0.13 1.57 3.27 -67.93 -0.22 1.34 16 3 C -0.18 -1.74 8.36 37.15 0.31 -1.43 16 4 N -0.62 -9.98 2.39 -167.31 -0.40 -10.38 16 5 C 0.10 1.92 5.89 -4.04 -0.02 1.90 16 6 C 0.14 3.04 6.03 -4.04 -0.02 3.02 16 7 N -0.60 -15.19 2.89 -181.12 -0.52 -15.72 16 8 C 0.16 3.86 9.06 59.85 0.54 4.40 16 9 C -0.26 -7.38 9.57 -15.06 -0.14 -7.52 16 10 H 0.06 1.78 7.84 -52.49 -0.41 1.37 16 11 C 0.01 0.34 5.25 -17.43 -0.09 0.25 16 12 N -0.90 -26.47 10.97 55.49 0.61 -25.86 16 13 Si 0.90 22.35 29.56 -169.99 -5.02 17.32 16 14 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 15 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 16 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 17 C 0.57 10.03 5.87 -12.44 -0.07 9.95 16 18 O -0.52 -11.25 16.79 5.29 0.09 -11.16 16 19 C -0.18 -2.59 4.25 -104.92 -0.45 -3.04 16 20 C -0.05 -0.57 4.86 -39.30 -0.19 -0.76 16 21 C -0.18 -1.89 9.79 -39.36 -0.39 -2.28 16 22 C 0.13 1.56 7.05 -38.69 -0.27 1.29 16 23 C -0.20 -2.40 6.26 -104.12 -0.65 -3.05 16 24 C -0.01 -0.11 9.65 -39.36 -0.38 -0.49 16 25 C -0.11 -0.91 7.12 -26.51 -0.19 -1.10 16 26 C 0.05 0.38 8.00 38.05 0.30 0.69 16 27 O -0.30 -3.31 11.09 -19.69 -0.22 -3.53 16 28 H 0.10 1.20 3.98 -61.54 -0.24 0.96 16 29 H 0.08 0.58 5.23 -51.93 -0.27 0.31 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.10 1.09 7.81 -51.93 -0.41 0.68 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.50 6.18 -51.93 -0.32 0.18 16 34 H 0.07 0.79 6.83 -51.93 -0.35 0.43 16 35 H 0.07 1.31 7.93 -51.93 -0.41 0.90 16 36 H 0.09 2.07 7.36 -51.93 -0.38 1.68 16 37 H 0.04 0.90 8.04 -51.93 -0.42 0.48 16 38 H 0.04 0.68 7.86 -51.93 -0.41 0.27 16 39 H 0.03 0.89 7.20 -51.93 -0.37 0.52 16 40 H 0.04 0.95 7.78 -51.93 -0.40 0.55 16 41 H 0.00 -0.03 7.84 -51.93 -0.41 -0.44 16 42 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 43 H 0.18 1.69 1.08 -53.58 -0.06 1.63 16 44 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 45 H 0.13 1.85 8.06 -52.49 -0.42 1.43 16 46 H 0.09 0.69 8.14 -51.94 -0.42 0.27 16 47 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 48 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 49 H 0.11 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 379.25 15.07 5.72 5.72 Total: -1.00 -33.65 379.25 -8.79 -42.44 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -7.39 Total: -0.23 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -1.65 Total: 1.39 kcal Atomic # 7 Polarization: -51.64 SS G_CDS: -0.32 Total: -51.96 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: -0.13 Total: -14.69 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.65 -8.79 -42.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571614331.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.863 kcal (2) G-P(sol) polarization free energy of solvation -33.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds