Wall clock time and date at job start Tue Mar 31 2020 16:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47605 * 2 1 4 4 N 1.46501 * 109.47010 * 120.00267 * 2 1 3 5 5 C 1.46500 * 120.00536 * 121.73617 * 4 2 1 6 6 C 1.52997 * 109.47392 * 270.00101 * 5 4 2 7 7 N 1.46502 * 109.47293 * 179.97438 * 6 5 4 8 8 C 1.46498 * 119.99966 * 270.00085 * 7 6 5 9 9 C 1.36930 * 119.99669 * 89.99953 * 7 6 5 10 10 H 1.08001 * 120.00326 * 32.92614 * 9 7 6 11 11 C 1.38816 * 119.99952 * 212.92033 * 9 7 6 12 12 N 1.31618 * 119.99752 * 5.85889 * 11 9 7 13 13 Si 1.86794 * 120.00252 * 185.85810 * 11 9 7 14 14 H 1.48500 * 109.47238 * 60.00158 * 13 11 9 15 15 H 1.48502 * 109.47394 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47161 * 300.00332 * 13 11 9 17 17 C 1.34784 * 119.99886 * 301.73754 * 4 2 1 18 18 O 1.21581 * 119.99760 * 212.26906 * 17 4 2 19 19 C 1.47599 * 119.99825 * 32.26878 * 17 4 2 20 20 C 1.39749 * 120.26886 * 317.36437 * 19 17 4 21 21 C 1.37467 * 120.20477 * 180.22094 * 20 19 17 22 22 C 1.39595 * 120.43433 * 0.02562 * 21 20 19 23 23 C 1.39278 * 119.08362 * 359.59678 * 22 21 20 24 24 C 1.37236 * 120.92326 * 0.61160 * 23 22 21 25 25 C 1.51674 * 106.94286 * 180.58828 * 23 22 21 26 26 C 1.54705 * 101.91102 * 15.73647 * 25 23 22 27 27 O 1.35984 * 129.71322 * 179.57688 * 22 21 20 28 28 H 1.08992 * 109.47201 * 253.48791 * 1 2 3 29 29 H 1.08998 * 109.46670 * 13.48404 * 1 2 3 30 30 H 1.09001 * 109.46728 * 133.48298 * 1 2 3 31 31 H 1.09000 * 109.46979 * 239.99759 * 2 1 3 32 32 H 1.08997 * 109.47392 * 223.59730 * 3 2 1 33 33 H 1.09004 * 109.46924 * 343.60083 * 3 2 1 34 34 H 1.08998 * 109.47225 * 103.59726 * 3 2 1 35 35 H 1.09001 * 109.46783 * 30.00314 * 5 4 2 36 36 H 1.08998 * 109.47507 * 149.99530 * 5 4 2 37 37 H 1.09001 * 109.47330 * 299.99878 * 6 5 4 38 38 H 1.09003 * 109.47072 * 59.99695 * 6 5 4 39 39 H 1.09003 * 109.47073 * 94.75214 * 8 7 6 40 40 H 1.08995 * 109.47040 * 214.75292 * 8 7 6 41 41 H 1.09001 * 109.47443 * 334.75555 * 8 7 6 42 42 H 0.97004 * 120.00138 * 179.97438 * 12 11 9 43 43 H 1.08002 * 119.90250 * 0.20244 * 20 19 17 44 44 H 1.08008 * 119.78441 * 179.97438 * 21 20 19 45 45 H 1.07997 * 120.04616 * 179.57026 * 24 23 22 46 46 H 1.08989 * 110.95171 * 257.57081 * 25 23 22 47 47 H 1.08996 * 110.94214 * 133.89829 * 25 23 22 48 48 H 1.09004 * 110.73703 * 92.89166 * 26 25 23 49 49 H 1.08994 * 110.73959 * 216.04069 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.8917 -1.8592 1.0622 6 6 2.0391 -3.1276 0.9902 7 7 2.9125 -4.2961 0.8556 8 6 3.2972 -4.7737 -0.4748 9 6 3.3692 -4.9418 1.9734 10 1 2.7525 -4.9908 2.8587 11 6 4.6250 -5.5335 1.9687 12 7 5.4226 -5.3763 0.9337 13 14 5.1826 -6.5528 3.4314 14 1 4.2500 -7.6921 3.6252 15 1 6.5518 -7.0705 3.1809 16 1 5.1896 -5.7059 4.6511 17 6 1.6640 -0.2510 2.4200 18 8 2.4328 -0.3693 3.3545 19 6 0.3428 0.3740 2.6257 20 6 -0.1570 1.2876 1.6938 21 6 -1.3857 1.8724 1.8890 22 6 -2.1456 1.5612 3.0179 23 6 -1.6454 0.6439 3.9389 24 6 -0.4181 0.0579 3.7552 25 6 -2.6868 0.5031 5.0326 26 6 -3.9352 1.1293 4.3674 27 8 -3.3650 2.0263 3.3997 28 1 -0.3633 -0.2921 0.9852 29 1 -0.3632 0.9993 -0.2396 30 1 -0.3633 -0.7072 -0.7457 31 1 1.8933 -0.5139 -0.8900 32 1 2.8629 1.5369 -0.7086 33 1 1.2318 2.1136 -0.2902 34 1 2.3890 1.7044 0.9988 35 1 3.4841 -1.7675 0.1518 36 1 3.5565 -1.9167 1.9240 37 1 1.4467 -3.2193 1.9005 38 1 1.3743 -3.0701 0.1283 39 1 4.2595 -4.3428 -0.7514 40 1 3.3761 -5.8607 -0.4619 41 1 2.5422 -4.4728 -1.2013 42 1 6.3003 -5.7895 0.9306 43 1 0.4239 1.5353 0.8176 44 1 -1.7653 2.5779 1.1646 45 1 -0.0410 -0.6463 4.4820 46 1 -2.3966 1.0631 5.9215 47 1 -2.8587 -0.5458 5.2741 48 1 -4.5362 0.3635 3.8768 49 1 -4.5303 1.6746 5.0998 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571614331.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:32 Heat of formation + Delta-G solvation = 49.093619 kcal Electronic energy + Delta-G solvation = -29667.577694 eV Core-core repulsion = 25791.823303 eV Total energy + Delta-G solvation = -3875.754391 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.69169 -41.42741 -38.73456 -38.04729 -37.16726 -34.53716 -33.53548 -32.75801 -31.53825 -30.23079 -29.50826 -27.96185 -27.88473 -25.94047 -24.68525 -23.76378 -23.24493 -22.79266 -22.23216 -19.87913 -18.83363 -18.57370 -18.01545 -17.82698 -17.21492 -16.98500 -16.93132 -16.28077 -15.77554 -15.57694 -15.47169 -15.15342 -15.02741 -14.84739 -14.59574 -14.33138 -14.07291 -14.03565 -13.77921 -13.50011 -13.26041 -13.19314 -13.02796 -12.91329 -12.77414 -12.73264 -12.58897 -12.42590 -12.18103 -12.09503 -12.08312 -12.01767 -11.66131 -11.51174 -11.07554 -11.01085 -10.69829 -9.76875 -9.66846 -8.95291 -8.66585 -7.88415 -5.47652 -0.09846 0.32847 1.40863 1.43872 1.48634 1.50520 1.95873 2.26580 2.46981 2.63929 3.25284 3.41305 3.49552 3.69207 3.74095 3.81896 3.86229 3.97718 4.06088 4.14692 4.16846 4.18076 4.37754 4.50126 4.54393 4.62063 4.62797 4.66790 4.69308 4.79575 4.84878 4.85989 4.86656 4.92522 4.96278 5.03781 5.09017 5.18044 5.20048 5.26290 5.28956 5.31869 5.41533 5.44029 5.59793 5.68060 5.73462 6.11926 6.33748 6.46810 7.04300 7.13157 7.79858 8.26309 9.12160 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.014995 B = 0.003214 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.779259 B = 8710.570390 C = 9737.669686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.124 3.876 3 C -0.180 4.180 4 N -0.618 5.618 5 C 0.117 3.883 6 C 0.151 3.849 7 N -0.612 5.612 8 C 0.171 3.829 9 C -0.277 4.277 10 H 0.054 0.946 11 C -0.037 4.037 12 N -0.927 5.927 13 Si 0.963 3.037 14 H -0.273 1.273 15 H -0.286 1.286 16 H -0.283 1.283 17 C 0.572 3.428 18 O -0.579 6.579 19 C -0.203 4.203 20 C -0.035 4.035 21 C -0.174 4.174 22 C 0.132 3.868 23 C -0.212 4.212 24 C -0.028 4.028 25 C -0.109 4.109 26 C 0.050 3.950 27 O -0.313 6.313 28 H 0.080 0.920 29 H 0.110 0.890 30 H 0.070 0.930 31 H 0.107 0.893 32 H 0.079 0.921 33 H 0.112 0.888 34 H 0.044 0.956 35 H 0.073 0.927 36 H 0.035 0.965 37 H 0.023 0.977 38 H 0.068 0.932 39 H 0.012 0.988 40 H 0.012 0.988 41 H 0.039 0.961 42 H 0.252 0.748 43 H 0.200 0.800 44 H 0.165 0.835 45 H 0.111 0.889 46 H 0.097 0.903 47 H 0.101 0.899 48 H 0.091 0.909 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.989 17.983 -2.192 26.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.022 3.978 3 C -0.238 4.238 4 N -0.351 5.351 5 C -0.009 4.009 6 C 0.024 3.976 7 N -0.336 5.336 8 C 0.026 3.974 9 C -0.407 4.407 10 H 0.071 0.929 11 C -0.234 4.234 12 N -0.572 5.572 13 Si 0.791 3.209 14 H -0.198 1.198 15 H -0.212 1.212 16 H -0.209 1.209 17 C 0.364 3.636 18 O -0.458 6.458 19 C -0.206 4.206 20 C -0.052 4.052 21 C -0.193 4.193 22 C 0.086 3.914 23 C -0.213 4.213 24 C -0.047 4.047 25 C -0.146 4.146 26 C -0.024 4.024 27 O -0.227 6.227 28 H 0.098 0.902 29 H 0.128 0.872 30 H 0.089 0.911 31 H 0.125 0.875 32 H 0.098 0.902 33 H 0.130 0.870 34 H 0.063 0.937 35 H 0.092 0.908 36 H 0.053 0.947 37 H 0.041 0.959 38 H 0.086 0.914 39 H 0.030 0.970 40 H 0.031 0.969 41 H 0.058 0.942 42 H 0.061 0.939 43 H 0.216 0.784 44 H 0.183 0.817 45 H 0.129 0.871 46 H 0.115 0.885 47 H 0.120 0.880 48 H 0.110 0.890 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -19.555 18.009 -1.835 26.648 hybrid contribution 1.166 -1.255 1.277 2.137 sum -18.389 16.754 -0.557 24.883 Atomic orbital electron populations 1.23750 0.93932 1.04591 1.03756 1.21532 0.95299 0.93779 0.87219 1.22708 1.03612 0.94825 1.02612 1.47946 1.50966 1.30598 1.05637 1.22055 0.93101 0.84732 1.00981 1.21192 0.92061 0.85387 0.99009 1.44017 1.57474 1.29233 1.02860 1.20657 0.96151 0.96463 0.84098 1.19293 0.97534 1.30138 0.93746 0.92852 1.25965 0.95572 1.02026 0.99796 1.70120 1.08809 1.47168 1.31058 0.85424 0.77270 0.78777 0.79464 1.19845 1.21167 1.20945 1.18602 0.86170 0.76522 0.82353 1.90741 1.53600 1.57025 1.44461 1.19682 0.95646 1.05598 0.99693 1.22834 0.95493 0.89961 0.96922 1.20400 0.95171 1.06155 0.97529 1.20113 0.86024 0.91769 0.93516 1.20785 0.97416 1.03562 0.99553 1.20169 0.92450 0.97214 0.94865 1.21877 0.91831 1.04071 0.96821 1.24138 0.95225 0.92862 0.90148 1.86755 1.29101 1.47650 1.59147 0.90233 0.87150 0.91091 0.87494 0.90172 0.87019 0.93727 0.90845 0.94658 0.95854 0.91381 0.96966 0.96878 0.94220 0.93924 0.78368 0.81738 0.87132 0.88514 0.88026 0.89041 0.84749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.41 7.72 71.98 0.56 -2.86 16 2 C 0.12 2.63 3.27 44.99 0.15 2.78 16 3 C -0.18 -2.98 8.36 71.98 0.60 -2.38 16 4 N -0.62 -20.21 2.39 -801.49 -1.92 -22.13 16 5 C 0.12 4.81 5.89 86.38 0.51 5.32 16 6 C 0.15 6.50 6.03 86.38 0.52 7.02 16 7 N -0.61 -31.90 2.89 -726.94 -2.10 -34.00 16 8 C 0.17 8.36 9.06 127.77 1.16 9.52 16 9 C -0.28 -16.14 9.57 84.04 0.80 -15.34 16 10 H 0.05 3.15 7.84 -2.91 -0.02 3.13 16 11 C -0.04 -2.14 5.25 84.86 0.45 -1.70 16 12 N -0.93 -55.71 10.97 21.65 0.24 -55.47 16 13 Si 0.96 47.08 29.56 68.60 2.03 49.11 16 14 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 15 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 16 H -0.28 -13.86 7.11 99.48 0.71 -13.16 16 17 C 0.57 21.03 5.87 86.71 0.51 21.54 16 18 O -0.58 -27.35 16.79 -3.97 -0.07 -27.41 16 19 C -0.20 -5.84 4.25 -20.06 -0.09 -5.92 16 20 C -0.04 -0.71 4.86 22.45 0.11 -0.60 16 21 C -0.17 -3.07 9.79 22.42 0.22 -2.85 16 22 C 0.13 2.76 7.05 22.85 0.16 2.92 16 23 C -0.21 -4.87 6.26 -19.54 -0.12 -4.99 16 24 C -0.03 -0.80 9.65 22.41 0.22 -0.58 16 25 C -0.11 -1.69 7.12 30.74 0.22 -1.47 16 26 C 0.05 0.60 8.00 72.56 0.58 1.18 16 27 O -0.31 -5.81 11.09 -93.37 -1.04 -6.85 16 28 H 0.08 1.76 3.98 -11.41 -0.05 1.72 16 29 H 0.11 1.10 5.23 -2.39 -0.01 1.08 16 30 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.11 2.09 7.81 -2.39 -0.02 2.07 16 32 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.11 0.97 6.18 -2.39 -0.01 0.96 16 34 H 0.04 0.98 6.83 -2.39 -0.02 0.97 16 35 H 0.07 2.91 7.93 -2.39 -0.02 2.89 16 36 H 0.03 1.81 7.36 -2.39 -0.02 1.79 16 37 H 0.02 1.07 8.04 -2.39 -0.02 1.05 16 38 H 0.07 2.48 7.86 -2.39 -0.02 2.47 16 39 H 0.01 0.64 7.20 -2.39 -0.02 0.63 16 40 H 0.01 0.66 7.78 -2.39 -0.02 0.64 16 41 H 0.04 1.58 7.84 -2.39 -0.02 1.57 16 42 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 43 H 0.20 3.04 1.08 -3.94 0.00 3.04 16 44 H 0.17 1.81 8.06 -2.91 -0.02 1.79 16 45 H 0.11 3.48 8.06 -2.91 -0.02 3.46 16 46 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 47 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 48 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 49 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -78.35 379.25 4.61 -73.73 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: 0.92 Total: 11.45 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: 6.55 Total: 11.57 kcal Atomic # 7 Polarization: -107.82 SS G_CDS: -3.78 Total: -111.60 kcal Atomic # 8 Polarization: -33.16 SS G_CDS: -1.10 Total: -34.26 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 2.03 Total: 49.11 kcal Total: -78.35 4.61 -73.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571614331.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.827 kcal (2) G-P(sol) polarization free energy of solvation -78.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds