Wall clock time and date at job start Tue Mar 31 2020 16:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47393 * 2 1 4 4 N 1.46502 * 109.47177 * 120.00002 * 2 1 3 5 5 C 1.46494 * 120.00077 * 121.57165 * 4 2 1 6 6 C 1.53005 * 109.47321 * 269.99946 * 5 4 2 7 7 N 1.46494 * 109.47321 * 179.97438 * 6 5 4 8 8 C 1.46497 * 120.00142 * 270.00419 * 7 6 5 9 9 C 1.36941 * 120.00010 * 89.99844 * 7 6 5 10 10 H 1.08001 * 119.99773 * 32.94265 * 9 7 6 11 11 C 1.38812 * 120.00316 * 212.93552 * 9 7 6 12 12 N 1.31624 * 119.99801 * 5.85293 * 11 9 7 13 13 Si 1.86792 * 120.00116 * 185.85165 * 11 9 7 14 14 H 1.48506 * 109.47201 * 60.00388 * 13 11 9 15 15 H 1.48506 * 109.47190 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47130 * 300.00035 * 13 11 9 17 17 C 1.34784 * 119.99567 * 301.57118 * 4 2 1 18 18 O 1.21546 * 119.99573 * 212.26959 * 17 4 2 19 19 C 1.47845 * 120.00142 * 32.27882 * 17 4 2 20 20 C 1.39605 * 120.12927 * 317.59482 * 19 17 4 21 21 C 1.37992 * 119.89074 * 179.97438 * 20 19 17 22 22 C 1.38140 * 120.10842 * 0.08210 * 21 20 19 23 23 C 1.38749 * 120.27571 * 359.97217 * 22 21 20 24 24 C 1.37703 * 120.18400 * 359.97438 * 23 22 21 25 25 C 1.51113 * 107.25526 * 180.02562 * 23 22 21 26 26 O 1.43929 * 105.95942 * 17.71913 * 25 23 22 27 27 C 1.43929 * 104.96703 * 331.48738 * 26 25 23 28 28 H 1.08999 * 109.46984 * 253.59397 * 1 2 3 29 29 H 1.09004 * 109.46605 * 13.58733 * 1 2 3 30 30 H 1.08996 * 109.47075 * 133.58769 * 1 2 3 31 31 H 1.09002 * 109.47187 * 239.99661 * 2 1 3 32 32 H 1.09000 * 109.46759 * 223.63631 * 3 2 1 33 33 H 1.09007 * 109.46818 * 343.62969 * 3 2 1 34 34 H 1.08994 * 109.47342 * 103.62930 * 3 2 1 35 35 H 1.09001 * 109.47383 * 30.00358 * 5 4 2 36 36 H 1.09007 * 109.47090 * 150.00146 * 5 4 2 37 37 H 1.08997 * 109.46813 * 300.00251 * 6 5 4 38 38 H 1.09001 * 109.46498 * 60.00254 * 6 5 4 39 39 H 1.08997 * 109.47494 * 94.75652 * 8 7 6 40 40 H 1.09002 * 109.47363 * 214.75895 * 8 7 6 41 41 H 1.09007 * 109.47125 * 334.75370 * 8 7 6 42 42 H 0.96996 * 119.99937 * 179.97438 * 12 11 9 43 43 H 1.07996 * 120.05364 * 0.04390 * 20 19 17 44 44 H 1.08003 * 119.94827 * 180.02562 * 21 20 19 45 45 H 1.08002 * 120.09659 * 179.72279 * 24 23 22 46 46 H 1.09000 * 110.15487 * 136.84880 * 25 23 22 47 47 H 1.09011 * 110.15338 * 258.59717 * 25 23 22 48 48 H 1.09000 * 110.15166 * 147.64688 * 27 26 25 49 49 H 1.09000 * 110.15335 * 269.31879 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.8888 -1.8613 1.0621 6 6 2.0331 -3.1278 0.9925 7 7 2.9035 -4.2984 0.8578 8 6 3.2852 -4.7782 -0.4727 9 6 3.3604 -4.9442 1.9756 10 1 2.7447 -4.9911 2.8617 11 6 4.6148 -5.5386 1.9698 12 7 5.4115 -5.3841 0.9335 13 14 5.1723 -6.5577 3.4326 14 1 4.2375 -7.6948 3.6288 15 1 6.5400 -7.0785 3.1807 16 1 5.1828 -5.7095 4.6515 17 6 1.6668 -0.2488 2.4201 18 8 2.4363 -0.3679 3.3533 19 6 0.3451 0.3804 2.6274 20 6 -0.1529 1.2891 1.6919 21 6 -1.3874 1.8731 1.8900 22 6 -2.1294 1.5611 3.0127 23 6 -1.6395 0.6596 3.9467 24 6 -0.4095 0.0691 3.7601 25 6 -2.6765 0.5378 5.0390 26 8 -3.8997 1.0535 4.4827 27 6 -3.4831 2.0215 3.5024 28 1 -0.3633 -0.2903 0.9858 29 1 -0.3633 0.9990 -0.2414 30 1 -0.3633 -0.7085 -0.7443 31 1 1.8934 -0.5139 -0.8900 32 1 2.8624 1.5370 -0.7092 33 1 1.2315 2.1137 -0.2897 34 1 2.3895 1.7043 0.9987 35 1 3.4802 -1.7719 0.1508 36 1 3.5547 -1.9195 1.9231 37 1 1.4418 -3.2172 1.9038 38 1 1.3673 -3.0695 0.1315 39 1 4.2481 -4.3499 -0.7510 40 1 3.3615 -5.8654 -0.4589 41 1 2.5299 -4.4762 -1.1984 42 1 6.2882 -5.7991 0.9295 43 1 0.4265 1.5338 0.8140 44 1 -1.7737 2.5759 1.1667 45 1 -0.0276 -0.6291 4.4902 46 1 -2.8036 -0.5073 5.3215 47 1 -2.3799 1.1284 5.9060 48 1 -4.1927 2.0477 2.6754 49 1 -3.4029 3.0079 3.9591 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571615186.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:36 Heat of formation + Delta-G solvation = 65.167948 kcal Electronic energy + Delta-G solvation = -29632.298424 eV Core-core repulsion = 25757.241068 eV Total energy + Delta-G solvation = -3875.057356 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.66747 -40.06420 -37.60157 -36.74234 -35.58118 -33.10750 -31.84687 -31.32403 -30.86933 -28.51709 -27.71906 -27.34001 -25.88117 -25.48257 -23.55688 -22.55622 -22.14983 -21.83719 -20.42141 -18.68731 -17.29023 -16.87710 -16.73024 -16.67080 -16.30508 -15.72716 -15.32880 -14.92603 -14.62329 -14.58636 -14.33118 -14.00176 -13.72938 -13.66674 -13.27990 -13.18856 -13.02267 -12.76862 -12.58571 -12.48254 -12.25372 -12.12614 -11.66738 -11.58420 -11.49267 -11.24969 -11.19803 -10.86145 -10.80696 -10.61167 -10.52761 -10.15805 -10.07346 -10.04814 -9.77878 -9.70202 -9.07335 -8.57009 -8.38689 -8.27474 -6.62217 -5.73521 -3.29818 0.72092 1.14555 2.65767 3.13119 3.41634 3.45302 3.47660 3.49819 3.64731 3.95247 4.36300 4.48316 4.52549 4.56812 4.69989 4.76738 4.88713 5.01882 5.04550 5.14782 5.16234 5.28630 5.37602 5.39772 5.42721 5.47680 5.50979 5.55537 5.64376 5.75950 5.79222 5.84341 5.92827 5.95957 6.04611 6.09575 6.16179 6.26917 6.32854 6.41556 6.59875 6.65442 6.71728 6.81480 7.09961 7.28834 7.67848 7.69986 7.83387 8.29400 8.47003 9.24660 9.83758 10.37477 11.29961 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.014784 B = 0.003211 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.528135 B = 8718.107824 C = 9771.206479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.134 3.866 3 C -0.181 4.181 4 N -0.619 5.619 5 C 0.096 3.904 6 C 0.143 3.857 7 N -0.595 5.595 8 C 0.158 3.842 9 C -0.262 4.262 10 H 0.064 0.936 11 C 0.012 3.988 12 N -0.903 5.903 13 Si 0.904 3.096 14 H -0.283 1.283 15 H -0.290 1.290 16 H -0.280 1.280 17 C 0.571 3.429 18 O -0.515 6.515 19 C -0.146 4.146 20 C -0.081 4.081 21 C -0.135 4.135 22 C -0.105 4.105 23 C -0.158 4.158 24 C -0.033 4.033 25 C 0.094 3.906 26 O -0.362 6.362 27 C 0.089 3.911 28 H 0.098 0.902 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.098 0.902 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.040 0.960 38 H 0.036 0.964 39 H 0.034 0.966 40 H 0.037 0.963 41 H -0.002 1.002 42 H 0.254 0.746 43 H 0.180 0.820 44 H 0.129 0.871 45 H 0.133 0.867 46 H 0.098 0.902 47 H 0.077 0.923 48 H 0.098 0.902 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.486 17.903 -2.124 23.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.029 3.971 3 C -0.238 4.238 4 N -0.354 5.354 5 C -0.027 4.027 6 C 0.015 3.985 7 N -0.318 5.318 8 C 0.014 3.986 9 C -0.392 4.392 10 H 0.081 0.919 11 C -0.187 4.187 12 N -0.547 5.547 13 Si 0.733 3.267 14 H -0.209 1.209 15 H -0.215 1.215 16 H -0.206 1.206 17 C 0.358 3.642 18 O -0.389 6.389 19 C -0.150 4.150 20 C -0.098 4.098 21 C -0.153 4.153 22 C -0.105 4.105 23 C -0.158 4.158 24 C -0.052 4.052 25 C 0.018 3.982 26 O -0.280 6.280 27 C 0.013 3.987 28 H 0.116 0.884 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.116 0.884 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.105 0.895 37 H 0.059 0.941 38 H 0.054 0.946 39 H 0.052 0.948 40 H 0.055 0.945 41 H 0.017 0.983 42 H 0.064 0.936 43 H 0.196 0.804 44 H 0.147 0.853 45 H 0.151 0.849 46 H 0.116 0.884 47 H 0.095 0.905 48 H 0.116 0.884 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.083 17.641 -1.608 23.266 hybrid contribution 0.698 -0.540 0.590 1.062 sum -14.385 17.102 -1.018 22.370 Atomic orbital electron populations 1.23781 0.95686 1.02173 1.04475 1.21139 0.93826 0.92935 0.89167 1.22698 1.01850 0.95700 1.03564 1.47973 1.51832 1.31494 1.04117 1.22698 0.93648 0.83169 1.03230 1.21200 0.92560 0.86197 0.98560 1.43816 1.57370 1.27467 1.03129 1.20851 0.95884 0.98172 0.83723 1.19094 0.97382 1.29653 0.93048 0.91870 1.25285 0.95467 1.00634 0.97330 1.69979 1.08871 1.46225 1.29615 0.86358 0.77587 0.80110 0.82635 1.20896 1.21547 1.20648 1.18097 0.85458 0.77557 0.83043 1.90786 1.51494 1.53979 1.42674 1.20072 0.96459 1.01570 0.96869 1.22990 0.96369 0.92578 0.97862 1.20203 0.94988 1.02522 0.97596 1.21198 0.96982 0.96915 0.95419 1.20811 0.96674 1.00313 0.98026 1.20346 0.91835 0.97503 0.95478 1.21722 0.81868 1.00816 0.93788 1.89076 1.26906 1.57168 1.54895 1.21786 0.92315 0.92583 0.92018 0.88449 0.90603 0.92125 0.88371 0.91101 0.90916 0.91453 0.91341 0.89494 0.94117 0.94607 0.94772 0.94465 0.98300 0.93592 0.80414 0.85332 0.84928 0.88350 0.90504 0.88425 0.90422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.98 7.72 37.16 0.29 -1.69 16 2 C 0.13 1.51 3.27 -67.93 -0.22 1.29 16 3 C -0.18 -1.66 8.36 37.16 0.31 -1.35 16 4 N -0.62 -9.76 2.39 -167.21 -0.40 -10.16 16 5 C 0.10 1.89 5.89 -4.04 -0.02 1.86 16 6 C 0.14 3.02 6.03 -4.04 -0.02 2.99 16 7 N -0.59 -15.12 2.89 -181.12 -0.52 -15.65 16 8 C 0.16 3.84 9.06 59.85 0.54 4.38 16 9 C -0.26 -7.37 9.57 -15.06 -0.14 -7.52 16 10 H 0.06 1.78 7.84 -52.49 -0.41 1.37 16 11 C 0.01 0.35 5.25 -17.43 -0.09 0.26 16 12 N -0.90 -26.37 10.97 55.49 0.61 -25.76 16 13 Si 0.90 22.30 29.56 -169.99 -5.02 17.28 16 14 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 15 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 16 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 17 C 0.57 9.73 5.87 -12.33 -0.07 9.65 16 18 O -0.51 -10.96 16.79 5.33 0.09 -10.87 16 19 C -0.15 -2.01 4.26 -104.94 -0.45 -2.45 16 20 C -0.08 -0.84 4.87 -39.16 -0.19 -1.03 16 21 C -0.14 -1.22 9.78 -39.71 -0.39 -1.61 16 22 C -0.10 -1.06 6.33 -104.25 -0.66 -1.72 16 23 C -0.16 -1.82 6.31 -104.43 -0.66 -2.48 16 24 C -0.03 -0.44 9.66 -39.26 -0.38 -0.82 16 25 C 0.09 0.93 7.63 36.21 0.28 1.21 16 26 O -0.36 -3.90 11.72 -35.23 -0.41 -4.32 16 27 C 0.09 0.76 7.63 36.22 0.28 1.03 16 28 H 0.10 1.15 3.99 -61.75 -0.25 0.90 16 29 H 0.08 0.54 5.24 -51.93 -0.27 0.26 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.10 1.07 7.81 -51.93 -0.41 0.66 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.46 6.18 -51.92 -0.32 0.14 16 34 H 0.07 0.75 6.82 -51.93 -0.35 0.40 16 35 H 0.07 1.31 7.93 -51.93 -0.41 0.90 16 36 H 0.09 2.06 7.36 -51.93 -0.38 1.67 16 37 H 0.04 0.90 8.04 -51.93 -0.42 0.48 16 38 H 0.04 0.68 7.86 -51.93 -0.41 0.27 16 39 H 0.03 0.89 7.19 -51.93 -0.37 0.51 16 40 H 0.04 0.96 7.78 -51.93 -0.40 0.56 16 41 H 0.00 -0.03 7.84 -51.93 -0.41 -0.44 16 42 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 43 H 0.18 1.56 1.06 -53.86 -0.06 1.50 16 44 H 0.13 0.78 8.06 -52.48 -0.42 0.35 16 45 H 0.13 1.82 8.06 -52.49 -0.42 1.40 16 46 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.08 0.66 8.14 -51.92 -0.42 0.23 16 48 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 49 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 379.34 15.07 5.72 5.72 Total: -1.00 -33.33 379.34 -8.94 -42.28 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -7.39 Total: -0.54 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -1.61 Total: 2.02 kcal Atomic # 7 Polarization: -51.25 SS G_CDS: -0.32 Total: -51.57 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -0.32 Total: -15.19 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.33 -8.94 -42.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571615186.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.448 kcal (2) G-P(sol) polarization free energy of solvation -33.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds