Wall clock time and date at job start Tue Mar 31 2020 16:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47393 * 2 1 4 4 N 1.46502 * 109.47177 * 120.00002 * 2 1 3 5 5 C 1.46494 * 120.00077 * 121.57165 * 4 2 1 6 6 C 1.53005 * 109.47321 * 269.99946 * 5 4 2 7 7 N 1.46494 * 109.47321 * 179.97438 * 6 5 4 8 8 C 1.46497 * 120.00142 * 270.00419 * 7 6 5 9 9 C 1.36941 * 120.00010 * 89.99844 * 7 6 5 10 10 H 1.08001 * 119.99773 * 32.94265 * 9 7 6 11 11 C 1.38812 * 120.00316 * 212.93552 * 9 7 6 12 12 N 1.31624 * 119.99801 * 5.85293 * 11 9 7 13 13 Si 1.86792 * 120.00116 * 185.85165 * 11 9 7 14 14 H 1.48506 * 109.47201 * 60.00388 * 13 11 9 15 15 H 1.48506 * 109.47190 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47130 * 300.00035 * 13 11 9 17 17 C 1.34784 * 119.99567 * 301.57118 * 4 2 1 18 18 O 1.21546 * 119.99573 * 212.26959 * 17 4 2 19 19 C 1.47845 * 120.00142 * 32.27882 * 17 4 2 20 20 C 1.39605 * 120.12927 * 317.59482 * 19 17 4 21 21 C 1.37992 * 119.89074 * 179.97438 * 20 19 17 22 22 C 1.38140 * 120.10842 * 0.08210 * 21 20 19 23 23 C 1.38749 * 120.27571 * 359.97217 * 22 21 20 24 24 C 1.37703 * 120.18400 * 359.97438 * 23 22 21 25 25 C 1.51113 * 107.25526 * 180.02562 * 23 22 21 26 26 O 1.43929 * 105.95942 * 17.71913 * 25 23 22 27 27 C 1.43929 * 104.96703 * 331.48738 * 26 25 23 28 28 H 1.08999 * 109.46984 * 253.59397 * 1 2 3 29 29 H 1.09004 * 109.46605 * 13.58733 * 1 2 3 30 30 H 1.08996 * 109.47075 * 133.58769 * 1 2 3 31 31 H 1.09002 * 109.47187 * 239.99661 * 2 1 3 32 32 H 1.09000 * 109.46759 * 223.63631 * 3 2 1 33 33 H 1.09007 * 109.46818 * 343.62969 * 3 2 1 34 34 H 1.08994 * 109.47342 * 103.62930 * 3 2 1 35 35 H 1.09001 * 109.47383 * 30.00358 * 5 4 2 36 36 H 1.09007 * 109.47090 * 150.00146 * 5 4 2 37 37 H 1.08997 * 109.46813 * 300.00251 * 6 5 4 38 38 H 1.09001 * 109.46498 * 60.00254 * 6 5 4 39 39 H 1.08997 * 109.47494 * 94.75652 * 8 7 6 40 40 H 1.09002 * 109.47363 * 214.75895 * 8 7 6 41 41 H 1.09007 * 109.47125 * 334.75370 * 8 7 6 42 42 H 0.96996 * 119.99937 * 179.97438 * 12 11 9 43 43 H 1.07996 * 120.05364 * 0.04390 * 20 19 17 44 44 H 1.08003 * 119.94827 * 180.02562 * 21 20 19 45 45 H 1.08002 * 120.09659 * 179.72279 * 24 23 22 46 46 H 1.09000 * 110.15487 * 136.84880 * 25 23 22 47 47 H 1.09011 * 110.15338 * 258.59717 * 25 23 22 48 48 H 1.09000 * 110.15166 * 147.64688 * 27 26 25 49 49 H 1.09000 * 110.15335 * 269.31879 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.8888 -1.8613 1.0621 6 6 2.0331 -3.1278 0.9925 7 7 2.9035 -4.2984 0.8578 8 6 3.2852 -4.7782 -0.4727 9 6 3.3604 -4.9442 1.9756 10 1 2.7447 -4.9911 2.8617 11 6 4.6148 -5.5386 1.9698 12 7 5.4115 -5.3841 0.9335 13 14 5.1723 -6.5577 3.4326 14 1 4.2375 -7.6948 3.6288 15 1 6.5400 -7.0785 3.1807 16 1 5.1828 -5.7095 4.6515 17 6 1.6668 -0.2488 2.4201 18 8 2.4363 -0.3679 3.3533 19 6 0.3451 0.3804 2.6274 20 6 -0.1529 1.2891 1.6919 21 6 -1.3874 1.8731 1.8900 22 6 -2.1294 1.5611 3.0127 23 6 -1.6395 0.6596 3.9467 24 6 -0.4095 0.0691 3.7601 25 6 -2.6765 0.5378 5.0390 26 8 -3.8997 1.0535 4.4827 27 6 -3.4831 2.0215 3.5024 28 1 -0.3633 -0.2903 0.9858 29 1 -0.3633 0.9990 -0.2414 30 1 -0.3633 -0.7085 -0.7443 31 1 1.8934 -0.5139 -0.8900 32 1 2.8624 1.5370 -0.7092 33 1 1.2315 2.1137 -0.2897 34 1 2.3895 1.7043 0.9987 35 1 3.4802 -1.7719 0.1508 36 1 3.5547 -1.9195 1.9231 37 1 1.4418 -3.2172 1.9038 38 1 1.3673 -3.0695 0.1315 39 1 4.2481 -4.3499 -0.7510 40 1 3.3615 -5.8654 -0.4589 41 1 2.5299 -4.4762 -1.1984 42 1 6.2882 -5.7991 0.9295 43 1 0.4265 1.5338 0.8140 44 1 -1.7737 2.5759 1.1667 45 1 -0.0276 -0.6291 4.4902 46 1 -2.8036 -0.5073 5.3215 47 1 -2.3799 1.1284 5.9060 48 1 -4.1927 2.0477 2.6754 49 1 -3.4029 3.0079 3.9591 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571615186.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:35 Heat of formation + Delta-G solvation = 44.431944 kcal Electronic energy + Delta-G solvation = -29633.197605 eV Core-core repulsion = 25757.241068 eV Total energy + Delta-G solvation = -3875.956536 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.63871 -41.00706 -38.72675 -38.06996 -37.22098 -34.51777 -33.13906 -32.65592 -31.94211 -29.86277 -28.78131 -28.08152 -27.91958 -26.60749 -25.06221 -23.52128 -23.32502 -22.66270 -22.20286 -19.77664 -18.84177 -18.26334 -17.85392 -17.58749 -17.12266 -16.98498 -16.87862 -16.29820 -15.75839 -15.58068 -15.55814 -15.25134 -15.10342 -14.91296 -14.68506 -14.35785 -14.09054 -14.05211 -13.74497 -13.55086 -13.33048 -13.25632 -13.04437 -12.94149 -12.78486 -12.69214 -12.46537 -12.34138 -12.18570 -12.11483 -12.05717 -12.04510 -11.65391 -11.37041 -11.07137 -10.82685 -10.71169 -9.93409 -9.70746 -9.16933 -8.68676 -7.89887 -5.49279 -0.19536 0.30040 1.39419 1.41887 1.44565 1.49416 1.92289 2.45629 2.58530 2.93615 3.13194 3.24359 3.47926 3.60733 3.72044 3.80648 3.87090 3.97851 4.03968 4.15540 4.25604 4.36704 4.40877 4.45129 4.51141 4.56394 4.59546 4.63773 4.68432 4.73776 4.75540 4.83145 4.84581 4.89881 4.92942 4.95531 5.13392 5.16153 5.17630 5.23415 5.24859 5.28603 5.41198 5.58241 5.65384 5.66128 5.70431 5.80845 6.32238 6.42057 6.98369 7.11637 7.78163 8.24520 9.10662 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.014784 B = 0.003211 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.528135 B = 8718.107824 C = 9771.206479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.123 3.877 3 C -0.179 4.179 4 N -0.617 5.617 5 C 0.116 3.884 6 C 0.151 3.849 7 N -0.612 5.612 8 C 0.171 3.829 9 C -0.278 4.278 10 H 0.053 0.947 11 C -0.036 4.036 12 N -0.927 5.927 13 Si 0.963 3.037 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.283 1.283 17 C 0.567 3.433 18 O -0.576 6.576 19 C -0.168 4.168 20 C -0.067 4.067 21 C -0.123 4.123 22 C -0.099 4.099 23 C -0.172 4.172 24 C -0.054 4.054 25 C 0.094 3.906 26 O -0.379 6.379 27 C 0.086 3.914 28 H 0.077 0.923 29 H 0.114 0.886 30 H 0.069 0.931 31 H 0.106 0.894 32 H 0.079 0.921 33 H 0.114 0.886 34 H 0.043 0.957 35 H 0.074 0.926 36 H 0.035 0.965 37 H 0.022 0.978 38 H 0.068 0.932 39 H 0.013 0.987 40 H 0.012 0.988 41 H 0.039 0.961 42 H 0.252 0.748 43 H 0.199 0.801 44 H 0.175 0.825 45 H 0.109 0.891 46 H 0.099 0.901 47 H 0.089 0.911 48 H 0.123 0.877 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.256 20.437 -4.157 27.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.020 3.980 3 C -0.236 4.236 4 N -0.350 5.350 5 C -0.009 4.009 6 C 0.024 3.976 7 N -0.336 5.336 8 C 0.026 3.974 9 C -0.408 4.408 10 H 0.071 0.929 11 C -0.233 4.233 12 N -0.571 5.571 13 Si 0.791 3.209 14 H -0.199 1.199 15 H -0.211 1.211 16 H -0.209 1.209 17 C 0.358 3.642 18 O -0.456 6.456 19 C -0.172 4.172 20 C -0.084 4.084 21 C -0.141 4.141 22 C -0.100 4.100 23 C -0.172 4.172 24 C -0.073 4.073 25 C 0.018 3.982 26 O -0.298 6.298 27 C 0.011 3.989 28 H 0.095 0.905 29 H 0.132 0.868 30 H 0.087 0.913 31 H 0.124 0.876 32 H 0.098 0.902 33 H 0.132 0.868 34 H 0.062 0.938 35 H 0.093 0.907 36 H 0.054 0.946 37 H 0.040 0.960 38 H 0.086 0.914 39 H 0.031 0.969 40 H 0.031 0.969 41 H 0.058 0.942 42 H 0.061 0.939 43 H 0.214 0.786 44 H 0.193 0.807 45 H 0.127 0.873 46 H 0.117 0.883 47 H 0.106 0.894 48 H 0.140 0.860 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -17.901 20.205 -3.679 27.244 hybrid contribution 1.457 -1.249 1.194 2.260 sum -16.445 18.956 -2.485 25.218 Atomic orbital electron populations 1.23748 0.93829 1.04696 1.03565 1.21564 0.95393 0.93869 0.87130 1.22702 1.03650 0.94701 1.02565 1.47961 1.51038 1.30409 1.05638 1.22071 0.93156 0.84637 1.01044 1.21186 0.92092 0.85413 0.98956 1.44013 1.57659 1.29021 1.02879 1.20661 0.96180 0.96462 0.84069 1.19288 0.97645 1.30173 0.93693 0.92914 1.25960 0.95555 1.01982 0.99796 1.70117 1.08917 1.47090 1.30975 0.85427 0.77295 0.78773 0.79452 1.19881 1.21098 1.20940 1.18746 0.86290 0.76726 0.82429 1.90741 1.53457 1.56851 1.44507 1.19806 0.94926 1.03732 0.98696 1.23184 0.97004 0.91020 0.97195 1.20658 0.93686 1.02013 0.97741 1.21607 0.97634 0.95661 0.95088 1.20934 0.96116 1.00804 0.99391 1.20258 0.93232 0.98356 0.95504 1.21767 0.81440 1.01258 0.93770 1.89059 1.27134 1.57938 1.55628 1.22055 0.91667 0.92766 0.92423 0.90512 0.86787 0.91265 0.87558 0.90248 0.86788 0.93778 0.90743 0.94638 0.95962 0.91394 0.96912 0.96877 0.94219 0.93890 0.78557 0.80735 0.87331 0.88332 0.89350 0.85951 0.88345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.14 7.72 71.98 0.56 -2.59 16 2 C 0.12 2.49 3.27 44.99 0.15 2.64 16 3 C -0.18 -2.74 8.36 71.98 0.60 -2.13 16 4 N -0.62 -19.80 2.39 -801.20 -1.92 -21.72 16 5 C 0.12 4.75 5.89 86.38 0.51 5.26 16 6 C 0.15 6.49 6.03 86.38 0.52 7.02 16 7 N -0.61 -31.88 2.89 -726.94 -2.10 -33.98 16 8 C 0.17 8.34 9.06 127.77 1.16 9.50 16 9 C -0.28 -16.21 9.57 84.03 0.80 -15.41 16 10 H 0.05 3.12 7.84 -2.91 -0.02 3.10 16 11 C -0.04 -2.10 5.25 84.86 0.45 -1.65 16 12 N -0.93 -55.58 10.97 21.65 0.24 -55.34 16 13 Si 0.96 47.12 29.56 68.60 2.03 49.14 16 14 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 15 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 16 H -0.28 -13.87 7.11 99.48 0.71 -13.17 16 17 C 0.57 20.44 5.87 86.79 0.51 20.94 16 18 O -0.58 -26.89 16.79 -3.86 -0.06 -26.95 16 19 C -0.17 -4.65 4.26 -20.07 -0.09 -4.74 16 20 C -0.07 -1.20 4.87 22.54 0.11 -1.09 16 21 C -0.12 -1.64 9.78 22.19 0.22 -1.42 16 22 C -0.10 -1.68 6.33 -19.63 -0.12 -1.80 16 23 C -0.17 -3.85 6.31 -19.74 -0.12 -3.97 16 24 C -0.05 -1.53 9.66 22.48 0.22 -1.31 16 25 C 0.09 1.79 7.63 71.37 0.54 2.34 16 26 O -0.38 -7.33 11.72 -148.98 -1.75 -9.08 16 27 C 0.09 1.13 7.63 71.38 0.54 1.67 16 28 H 0.08 1.63 3.99 -11.61 -0.05 1.58 16 29 H 0.11 0.90 5.24 -2.38 -0.01 0.89 16 30 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.11 2.01 7.81 -2.39 -0.02 1.99 16 32 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.11 0.79 6.18 -2.38 -0.01 0.78 16 34 H 0.04 0.92 6.82 -2.39 -0.02 0.90 16 35 H 0.07 2.92 7.93 -2.39 -0.02 2.90 16 36 H 0.03 1.81 7.36 -2.38 -0.02 1.79 16 37 H 0.02 1.02 8.04 -2.39 -0.02 1.00 16 38 H 0.07 2.48 7.86 -2.39 -0.02 2.46 16 39 H 0.01 0.67 7.19 -2.39 -0.02 0.65 16 40 H 0.01 0.66 7.78 -2.39 -0.02 0.64 16 41 H 0.04 1.58 7.84 -2.38 -0.02 1.56 16 42 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 43 H 0.20 2.60 1.06 -4.20 0.00 2.59 16 44 H 0.18 0.79 8.06 -2.91 -0.02 0.77 16 45 H 0.11 3.41 8.06 -2.91 -0.02 3.38 16 46 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 47 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 48 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 49 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -78.78 379.34 3.91 -74.87 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: 0.92 Total: 9.80 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: 6.55 Total: 13.25 kcal Atomic # 7 Polarization: -107.25 SS G_CDS: -3.78 Total: -111.04 kcal Atomic # 8 Polarization: -34.22 SS G_CDS: -1.81 Total: -36.03 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.14 kcal Total: -78.78 3.91 -74.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571615186.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.304 kcal (2) G-P(sol) polarization free energy of solvation -78.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds