Wall clock time and date at job start Tue Mar 31 2020 17:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46769 * 2 1 4 4 N 1.46501 * 109.46849 * 179.97438 * 3 2 1 5 5 C 1.34775 * 120.00007 * 180.02562 * 4 3 2 6 6 O 1.21285 * 119.99963 * 0.02562 * 5 4 3 7 7 C 1.50691 * 120.00067 * 180.02562 * 5 4 3 8 8 H 1.09000 * 109.47522 * 59.99893 * 7 5 4 9 9 C 1.53005 * 109.47085 * 299.99713 * 7 5 4 10 10 N 1.46505 * 109.47297 * 179.97438 * 7 5 4 11 11 C 1.34770 * 120.00096 * 205.00022 * 10 7 5 12 12 O 1.21282 * 120.00471 * 359.97438 * 11 10 7 13 13 C 1.50700 * 120.00252 * 179.97438 * 11 10 7 14 14 C 1.52994 * 109.47505 * 179.97438 * 13 11 10 15 15 H 1.08997 * 109.47674 * 305.00018 * 14 13 11 16 16 C 1.50703 * 109.47113 * 64.99927 * 14 13 11 17 17 H 1.08004 * 120.00335 * 234.68120 * 16 14 13 18 18 C 1.37878 * 120.00054 * 54.67764 * 16 14 13 19 19 N 1.31520 * 119.99983 * 4.87392 * 18 16 14 20 20 Si 1.86799 * 120.00119 * 184.87211 * 18 16 14 21 21 H 1.48503 * 109.46824 * 90.00377 * 20 18 16 22 22 H 1.48506 * 109.46963 * 209.99682 * 20 18 16 23 23 H 1.48492 * 109.47102 * 330.00222 * 20 18 16 24 24 C 1.50702 * 109.47489 * 184.99687 * 14 13 11 25 25 C 1.38228 * 120.00094 * 151.48717 * 24 14 13 26 26 C 1.38237 * 119.99925 * 179.79258 * 25 24 14 27 27 C 1.38241 * 119.99832 * 0.43945 * 26 25 24 28 28 C 1.38232 * 119.99978 * 359.81479 * 27 26 25 29 29 C 1.38232 * 120.00028 * 359.97243 * 28 27 26 30 30 H 1.08994 * 109.47213 * 299.99914 * 1 2 3 31 31 H 1.09006 * 109.46825 * 59.99943 * 1 2 3 32 32 H 1.09002 * 109.47073 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47213 * 240.00086 * 2 1 3 34 34 H 1.08997 * 109.46710 * 119.99897 * 2 1 3 35 35 H 1.09000 * 109.46806 * 59.99871 * 3 2 1 36 36 H 1.08995 * 109.47202 * 299.99949 * 3 2 1 37 37 H 0.97002 * 120.00087 * 0.02562 * 4 3 2 38 38 H 1.09002 * 109.46767 * 60.00129 * 9 7 5 39 39 H 1.08997 * 109.47225 * 180.02562 * 9 7 5 40 40 H 1.08994 * 109.47059 * 300.00002 * 9 7 5 41 41 H 0.97003 * 119.99743 * 24.99419 * 10 7 5 42 42 H 1.09003 * 109.47082 * 59.99639 * 13 11 10 43 43 H 1.09003 * 109.46891 * 300.00039 * 13 11 10 44 44 H 0.97002 * 120.00077 * 179.97438 * 19 18 16 45 45 H 1.08004 * 120.00295 * 359.97438 * 25 24 14 46 46 H 1.07997 * 120.00031 * 180.27151 * 26 25 24 47 47 H 1.08002 * 119.99791 * 179.83480 * 27 26 25 48 48 H 1.07998 * 119.99579 * 180.02562 * 28 27 26 49 49 H 1.08001 * 120.00254 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1788 2.6098 0.0012 6 8 3.5724 3.6601 0.0018 7 6 5.6857 2.6098 0.0013 8 1 6.0492 2.0965 -0.8889 9 6 6.1957 1.8880 1.2503 10 7 6.1741 3.9911 0.0014 11 6 7.3960 4.2739 -0.4918 12 8 8.0917 3.3849 -0.9353 13 6 7.8982 5.6947 -0.4922 14 6 9.3010 5.7398 -1.1010 15 1 9.9521 5.0490 -0.5653 16 6 9.2316 5.3411 -2.5527 17 1 9.8496 4.5358 -2.9218 18 6 8.3791 6.0041 -3.4098 19 7 7.6979 7.0456 -2.9843 20 14 8.1918 5.4234 -5.1753 21 1 7.0947 4.4256 -5.2543 22 1 7.8702 6.5825 -6.0462 23 1 9.4611 4.8005 -5.6288 24 6 9.8523 7.1380 -0.9900 25 6 11.2172 7.3378 -0.9014 26 6 11.7230 8.6206 -0.8039 27 6 10.8633 9.7030 -0.7859 28 6 9.4981 9.5029 -0.8692 29 6 8.9926 8.2203 -0.9711 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6766 1.9564 -0.8899 37 1 3.9900 0.6025 0.0006 38 1 5.8324 0.8603 1.2497 39 1 7.2857 1.8884 1.2506 40 1 5.8324 2.4014 2.1404 41 1 5.6179 4.7021 0.3564 42 1 7.9346 6.0675 0.5315 43 1 7.2256 6.3176 -1.0819 44 1 7.0984 7.5123 -3.5874 45 1 11.8886 6.4919 -0.9113 46 1 12.7896 8.7769 -0.7391 47 1 11.2584 10.7051 -0.7070 48 1 8.8266 10.3486 -0.8555 49 1 7.9259 8.0639 -1.0358 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650217339.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:19 Heat of formation + Delta-G solvation = -60.255432 kcal Electronic energy + Delta-G solvation = -28573.982695 eV Core-core repulsion = 24693.486573 eV Total energy + Delta-G solvation = -3880.496122 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.15851 -38.77957 -37.93516 -36.05928 -34.73791 -33.95541 -32.90777 -31.09703 -30.43893 -29.75168 -28.20888 -26.64118 -25.84403 -24.00094 -22.51456 -21.96248 -21.39113 -20.39058 -19.84556 -19.24345 -17.45346 -16.56863 -16.25849 -16.07002 -15.85529 -15.31191 -15.14526 -14.91813 -14.71394 -14.08754 -13.84638 -13.70601 -13.58817 -13.28836 -13.09680 -12.79930 -12.71558 -12.43305 -12.32072 -12.24543 -12.17790 -11.67747 -11.53345 -11.50597 -11.42798 -11.31582 -11.24275 -10.86877 -10.75867 -10.37375 -10.13646 -9.91573 -9.81901 -9.26388 -9.25592 -9.15005 -8.78838 -8.54786 -8.35759 -7.76289 -7.39852 -5.93075 -4.03076 2.53861 2.56360 2.62474 2.90474 3.34197 3.40274 3.44703 3.70666 3.88640 4.46156 4.46979 4.59855 4.61986 4.87173 5.01760 5.14330 5.23730 5.26994 5.28078 5.29551 5.41617 5.52127 5.63953 5.75109 5.78639 5.83564 5.84970 5.93775 6.03529 6.09963 6.16965 6.25170 6.41861 6.50194 6.62981 6.76149 6.81985 6.94352 7.17703 7.20600 7.30849 7.33418 7.52441 7.58615 7.74101 7.97668 8.08598 8.12630 8.22522 8.28267 8.39264 8.93520 9.19795 9.60091 11.01047 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.015351 B = 0.002823 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.508591 B = 9914.410893 C =10602.027439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.136 4.136 3 C 0.117 3.883 4 N -0.732 5.732 5 C 0.512 3.488 6 O -0.532 6.532 7 C 0.127 3.873 8 H 0.110 0.890 9 C -0.156 4.156 10 N -0.731 5.731 11 C 0.529 3.471 12 O -0.528 6.528 13 C -0.137 4.137 14 C 0.089 3.911 15 H 0.037 0.963 16 C -0.471 4.471 17 H 0.059 0.941 18 C 0.060 3.940 19 N -0.888 5.888 20 Si 0.891 3.109 21 H -0.283 1.283 22 H -0.288 1.288 23 H -0.275 1.275 24 C -0.027 4.027 25 C -0.132 4.132 26 C -0.142 4.142 27 C -0.154 4.154 28 C -0.143 4.143 29 C -0.068 4.068 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.401 0.599 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.060 0.940 41 H 0.404 0.596 42 H 0.054 0.946 43 H 0.133 0.867 44 H 0.261 0.739 45 H 0.105 0.895 46 H 0.100 0.900 47 H 0.098 0.902 48 H 0.101 0.899 49 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.536 -9.612 9.163 16.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 C -0.006 4.006 4 N -0.385 5.385 5 C 0.298 3.702 6 O -0.407 6.407 7 C 0.018 3.982 8 H 0.128 0.872 9 C -0.215 4.215 10 N -0.388 5.388 11 C 0.318 3.682 12 O -0.403 6.403 13 C -0.177 4.177 14 C 0.070 3.930 15 H 0.056 0.944 16 C -0.509 4.509 17 H 0.077 0.923 18 C -0.140 4.140 19 N -0.527 5.527 20 Si 0.720 3.280 21 H -0.210 1.210 22 H -0.214 1.214 23 H -0.200 1.200 24 C -0.028 4.028 25 C -0.150 4.150 26 C -0.160 4.160 27 C -0.172 4.172 28 C -0.161 4.161 29 C -0.087 4.087 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.236 0.764 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.079 0.921 41 H 0.239 0.761 42 H 0.072 0.928 43 H 0.150 0.850 44 H 0.071 0.929 45 H 0.123 0.877 46 H 0.119 0.881 47 H 0.117 0.883 48 H 0.119 0.881 49 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -9.585 -9.355 8.729 15.987 hybrid contribution -0.281 -0.269 -1.155 1.219 sum -9.866 -9.624 7.573 15.726 Atomic orbital electron populations 1.21680 0.94554 1.02125 1.02400 1.21742 0.97004 0.95863 1.02802 1.21407 0.79547 0.97110 1.02553 1.45966 1.07299 1.08742 1.76499 1.20901 0.90299 0.83705 0.75340 1.90705 1.70113 1.31228 1.48664 1.20583 0.89190 0.87243 1.01219 0.87185 1.22127 1.03382 0.99271 0.96686 1.46030 1.19248 1.07231 1.66274 1.21193 0.79567 0.92604 0.74846 1.90599 1.56290 1.48819 1.44563 1.21932 1.03646 0.91938 1.00219 1.17623 0.90310 0.88840 0.96224 0.94427 1.20970 1.21843 1.15461 0.92588 0.92287 1.24894 0.96065 0.94592 0.98461 1.69670 1.28489 1.19158 1.35406 0.86583 0.78416 0.78082 0.84920 1.20982 1.21425 1.20017 1.20344 0.92349 0.97553 0.92560 1.20886 0.95543 0.95929 1.02622 1.20791 0.98077 0.93241 1.03904 1.20762 0.94022 0.97363 1.05097 1.21046 0.94669 0.97353 1.03054 1.21377 1.01522 0.90782 0.94990 0.92337 0.92298 0.92194 0.91210 0.91259 0.91456 0.91438 0.76404 0.91905 0.90471 0.92127 0.76072 0.92769 0.84960 0.92900 0.87683 0.88135 0.88338 0.88097 0.84248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.91 37.16 0.37 -0.46 16 2 C -0.14 -0.83 6.05 -26.73 -0.16 -0.99 16 3 C 0.12 1.06 5.67 -4.04 -0.02 1.03 16 4 N -0.73 -7.29 5.45 -60.30 -0.33 -7.61 16 5 C 0.51 7.14 7.22 -10.99 -0.08 7.06 16 6 O -0.53 -9.32 15.84 5.55 0.09 -9.23 16 7 C 0.13 1.85 2.98 -69.08 -0.21 1.64 16 8 H 0.11 1.72 7.58 -51.93 -0.39 1.33 16 9 C -0.16 -1.79 9.38 37.16 0.35 -1.44 16 10 N -0.73 -12.81 4.95 -54.93 -0.27 -13.08 16 11 C 0.53 11.22 7.54 -10.99 -0.08 11.13 16 12 O -0.53 -12.66 14.65 5.56 0.08 -12.58 16 13 C -0.14 -2.99 4.07 -27.89 -0.11 -3.11 16 14 C 0.09 2.15 1.97 -92.92 -0.18 1.97 16 15 H 0.04 0.92 7.91 -51.93 -0.41 0.51 16 16 C -0.47 -12.71 7.27 -34.44 -0.25 -12.96 16 17 H 0.06 1.67 7.82 -52.48 -0.41 1.26 16 18 C 0.06 1.60 5.12 -17.82 -0.09 1.51 16 19 N -0.89 -23.20 7.99 55.43 0.44 -22.75 16 20 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 21 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 C -0.03 -0.64 4.69 -104.62 -0.49 -1.13 16 25 C -0.13 -2.84 9.71 -39.59 -0.38 -3.22 16 26 C -0.14 -2.76 10.05 -39.58 -0.40 -3.16 16 27 C -0.15 -2.95 10.05 -39.58 -0.40 -3.35 16 28 C -0.14 -2.90 10.05 -39.59 -0.40 -3.29 16 29 C -0.07 -1.53 7.45 -39.58 -0.30 -1.82 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.40 2.89 7.89 -40.82 -0.32 2.57 16 38 H 0.06 0.52 7.56 -51.93 -0.39 0.13 16 39 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.40 6.78 7.79 -40.82 -0.32 6.46 16 42 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.13 3.12 4.71 -51.93 -0.24 2.88 16 44 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 45 H 0.11 2.14 8.06 -52.48 -0.42 1.72 16 46 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 47 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 48 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 49 H 0.14 3.21 5.18 -52.49 -0.27 2.94 16 LS Contribution 397.32 15.07 5.99 5.99 Total: -1.00 -31.45 397.32 -9.68 -41.13 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: -7.82 Total: 11.90 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: -2.84 Total: -10.59 kcal Atomic # 7 Polarization: -43.29 SS G_CDS: -0.16 Total: -43.45 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: 0.17 Total: -21.81 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.45 -9.68 -41.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650217339.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.129 kcal (2) G-P(sol) polarization free energy of solvation -31.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds