Wall clock time and date at job start Tue Mar 31 2020 17:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46769 * 2 1 4 4 N 1.46501 * 109.46849 * 179.97438 * 3 2 1 5 5 C 1.34775 * 120.00007 * 180.02562 * 4 3 2 6 6 O 1.21285 * 119.99963 * 0.02562 * 5 4 3 7 7 C 1.50691 * 120.00067 * 180.02562 * 5 4 3 8 8 H 1.09000 * 109.47522 * 59.99893 * 7 5 4 9 9 C 1.53005 * 109.47085 * 299.99713 * 7 5 4 10 10 N 1.46505 * 109.47297 * 179.97438 * 7 5 4 11 11 C 1.34770 * 120.00096 * 205.00022 * 10 7 5 12 12 O 1.21282 * 120.00471 * 359.97438 * 11 10 7 13 13 C 1.50700 * 120.00252 * 179.97438 * 11 10 7 14 14 C 1.52994 * 109.47505 * 179.97438 * 13 11 10 15 15 H 1.08997 * 109.47674 * 305.00018 * 14 13 11 16 16 C 1.50703 * 109.47113 * 64.99927 * 14 13 11 17 17 H 1.08004 * 120.00335 * 234.68120 * 16 14 13 18 18 C 1.37878 * 120.00054 * 54.67764 * 16 14 13 19 19 N 1.31520 * 119.99983 * 4.87392 * 18 16 14 20 20 Si 1.86799 * 120.00119 * 184.87211 * 18 16 14 21 21 H 1.48503 * 109.46824 * 90.00377 * 20 18 16 22 22 H 1.48506 * 109.46963 * 209.99682 * 20 18 16 23 23 H 1.48492 * 109.47102 * 330.00222 * 20 18 16 24 24 C 1.50702 * 109.47489 * 184.99687 * 14 13 11 25 25 C 1.38228 * 120.00094 * 151.48717 * 24 14 13 26 26 C 1.38237 * 119.99925 * 179.79258 * 25 24 14 27 27 C 1.38241 * 119.99832 * 0.43945 * 26 25 24 28 28 C 1.38232 * 119.99978 * 359.81479 * 27 26 25 29 29 C 1.38232 * 120.00028 * 359.97243 * 28 27 26 30 30 H 1.08994 * 109.47213 * 299.99914 * 1 2 3 31 31 H 1.09006 * 109.46825 * 59.99943 * 1 2 3 32 32 H 1.09002 * 109.47073 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47213 * 240.00086 * 2 1 3 34 34 H 1.08997 * 109.46710 * 119.99897 * 2 1 3 35 35 H 1.09000 * 109.46806 * 59.99871 * 3 2 1 36 36 H 1.08995 * 109.47202 * 299.99949 * 3 2 1 37 37 H 0.97002 * 120.00087 * 0.02562 * 4 3 2 38 38 H 1.09002 * 109.46767 * 60.00129 * 9 7 5 39 39 H 1.08997 * 109.47225 * 180.02562 * 9 7 5 40 40 H 1.08994 * 109.47059 * 300.00002 * 9 7 5 41 41 H 0.97003 * 119.99743 * 24.99419 * 10 7 5 42 42 H 1.09003 * 109.47082 * 59.99639 * 13 11 10 43 43 H 1.09003 * 109.46891 * 300.00039 * 13 11 10 44 44 H 0.97002 * 120.00077 * 179.97438 * 19 18 16 45 45 H 1.08004 * 120.00295 * 359.97438 * 25 24 14 46 46 H 1.07997 * 120.00031 * 180.27151 * 26 25 24 47 47 H 1.08002 * 119.99791 * 179.83480 * 27 26 25 48 48 H 1.07998 * 119.99579 * 180.02562 * 28 27 26 49 49 H 1.08001 * 120.00254 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1788 2.6098 0.0012 6 8 3.5724 3.6601 0.0018 7 6 5.6857 2.6098 0.0013 8 1 6.0492 2.0965 -0.8889 9 6 6.1957 1.8880 1.2503 10 7 6.1741 3.9911 0.0014 11 6 7.3960 4.2739 -0.4918 12 8 8.0917 3.3849 -0.9353 13 6 7.8982 5.6947 -0.4922 14 6 9.3010 5.7398 -1.1010 15 1 9.9521 5.0490 -0.5653 16 6 9.2316 5.3411 -2.5527 17 1 9.8496 4.5358 -2.9218 18 6 8.3791 6.0041 -3.4098 19 7 7.6979 7.0456 -2.9843 20 14 8.1918 5.4234 -5.1753 21 1 7.0947 4.4256 -5.2543 22 1 7.8702 6.5825 -6.0462 23 1 9.4611 4.8005 -5.6288 24 6 9.8523 7.1380 -0.9900 25 6 11.2172 7.3378 -0.9014 26 6 11.7230 8.6206 -0.8039 27 6 10.8633 9.7030 -0.7859 28 6 9.4981 9.5029 -0.8692 29 6 8.9926 8.2203 -0.9711 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6766 1.9564 -0.8899 37 1 3.9900 0.6025 0.0006 38 1 5.8324 0.8603 1.2497 39 1 7.2857 1.8884 1.2506 40 1 5.8324 2.4014 2.1404 41 1 5.6179 4.7021 0.3564 42 1 7.9346 6.0675 0.5315 43 1 7.2256 6.3176 -1.0819 44 1 7.0984 7.5123 -3.5874 45 1 11.8886 6.4919 -0.9113 46 1 12.7896 8.7769 -0.7391 47 1 11.2584 10.7051 -0.7070 48 1 8.8266 10.3486 -0.8555 49 1 7.9259 8.0639 -1.0358 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650217339.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:19 Heat of formation + Delta-G solvation = -79.445191 kcal Electronic energy + Delta-G solvation = -28574.814825 eV Core-core repulsion = 24693.486573 eV Total energy + Delta-G solvation = -3881.328252 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.39766 -40.35026 -39.52314 -36.93783 -36.28416 -35.62559 -33.75202 -32.97884 -31.75613 -31.33553 -29.82550 -27.69127 -27.40059 -25.23497 -24.14854 -22.99883 -22.60420 -21.77673 -21.17368 -20.90383 -18.84728 -17.99935 -17.83219 -17.39605 -16.93973 -16.86910 -16.68771 -16.22900 -15.96773 -15.59850 -15.41330 -15.20727 -14.85851 -14.68178 -14.38834 -13.92897 -13.79083 -13.77026 -13.43179 -13.34636 -13.31605 -13.23798 -13.07869 -12.94049 -12.81767 -12.71627 -12.59907 -12.21229 -12.05266 -11.86342 -11.76415 -11.68353 -11.07722 -11.04564 -10.98843 -10.63052 -10.31451 -10.21567 -9.98566 -9.38661 -9.10527 -7.93656 -6.09997 0.90253 1.01458 1.35166 1.38233 1.43553 1.45766 1.81849 2.07090 2.44438 2.54177 3.20725 3.38974 3.57783 3.90374 4.01903 4.05578 4.14416 4.30286 4.33951 4.36858 4.43155 4.53604 4.64446 4.66135 4.70945 4.73142 4.78939 4.84394 4.86847 4.91192 5.09734 5.14323 5.15830 5.18850 5.23699 5.28031 5.38338 5.43913 5.53691 5.55834 5.65648 5.69091 5.91031 5.95970 6.10881 6.37058 6.39684 6.43761 6.59258 6.71472 6.86135 7.07621 7.51899 7.55979 8.94929 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.015351 B = 0.002823 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.508591 B = 9914.410893 C =10602.027439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C 0.115 3.885 4 N -0.711 5.711 5 C 0.514 3.486 6 O -0.572 6.572 7 C 0.122 3.878 8 H 0.099 0.901 9 C -0.146 4.146 10 N -0.723 5.723 11 C 0.527 3.473 12 O -0.562 6.562 13 C -0.130 4.130 14 C 0.091 3.909 15 H 0.020 0.980 16 C -0.488 4.488 17 H 0.032 0.968 18 C 0.031 3.969 19 N -0.886 5.886 20 Si 0.929 3.071 21 H -0.288 1.288 22 H -0.281 1.281 23 H -0.279 1.279 24 C -0.052 4.052 25 C -0.149 4.149 26 C -0.139 4.139 27 C -0.148 4.148 28 C -0.148 4.148 29 C -0.083 4.083 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.063 0.937 36 H 0.051 0.949 37 H 0.418 0.582 38 H 0.101 0.899 39 H 0.058 0.942 40 H 0.067 0.933 41 H 0.408 0.592 42 H 0.074 0.926 43 H 0.118 0.882 44 H 0.259 0.741 45 H 0.106 0.894 46 H 0.133 0.867 47 H 0.136 0.864 48 H 0.124 0.876 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.934 -9.565 9.996 17.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C -0.008 4.008 4 N -0.364 5.364 5 C 0.300 3.700 6 O -0.452 6.452 7 C 0.013 3.987 8 H 0.116 0.884 9 C -0.205 4.205 10 N -0.378 5.378 11 C 0.317 3.683 12 O -0.440 6.440 13 C -0.170 4.170 14 C 0.072 3.928 15 H 0.039 0.961 16 C -0.526 4.526 17 H 0.050 0.950 18 C -0.168 4.168 19 N -0.525 5.525 20 Si 0.758 3.242 21 H -0.215 1.215 22 H -0.206 1.206 23 H -0.205 1.205 24 C -0.053 4.053 25 C -0.167 4.167 26 C -0.157 4.157 27 C -0.166 4.166 28 C -0.166 4.166 29 C -0.101 4.101 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.255 0.745 38 H 0.119 0.881 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.244 0.756 42 H 0.093 0.907 43 H 0.135 0.865 44 H 0.069 0.931 45 H 0.124 0.876 46 H 0.151 0.849 47 H 0.154 0.846 48 H 0.142 0.858 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.016 -9.349 9.584 16.720 hybrid contribution -0.165 -0.289 -1.371 1.411 sum -10.181 -9.638 8.213 16.248 Atomic orbital electron populations 1.21697 0.94112 1.02870 1.02175 1.21701 0.97254 0.93630 1.03875 1.21532 0.78506 0.99181 1.01604 1.45842 1.07926 1.08242 1.74404 1.20743 0.89850 0.84203 0.75211 1.90691 1.70613 1.32835 1.51017 1.20806 0.89947 0.85524 1.02399 0.88352 1.22068 1.02134 1.01167 0.95118 1.45875 1.18007 1.09002 1.64880 1.21067 0.80443 0.92046 0.74791 1.90576 1.57528 1.49519 1.46372 1.21764 1.02003 0.92372 1.00869 1.17517 0.91276 0.89472 0.94578 0.96113 1.20971 1.22114 1.15171 0.94373 0.94974 1.25277 0.96144 0.94969 1.00440 1.69785 1.28187 1.18974 1.35558 0.85997 0.77788 0.77747 0.82710 1.21487 1.20607 1.20454 1.20323 0.93383 0.97005 0.94571 1.21075 0.95039 0.97360 1.03266 1.21163 0.99989 0.92263 1.02294 1.21191 0.93386 0.99028 1.03021 1.21346 0.95965 0.97044 1.02253 1.21312 1.00846 0.91738 0.96213 0.92300 0.92890 0.90933 0.90561 0.89704 0.91876 0.93040 0.74486 0.88064 0.92278 0.91357 0.75606 0.90743 0.86469 0.93069 0.87620 0.84887 0.84641 0.85821 0.85557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.91 71.98 0.71 -0.68 16 2 C -0.13 -1.25 6.05 30.60 0.19 -1.06 16 3 C 0.12 1.93 5.67 86.38 0.49 2.42 16 4 N -0.71 -13.08 5.45 -463.06 -2.52 -15.60 16 5 C 0.51 14.08 7.22 87.65 0.63 14.72 16 6 O -0.57 -20.22 15.84 -3.04 -0.05 -20.27 16 7 C 0.12 3.53 2.98 44.24 0.13 3.66 16 8 H 0.10 3.12 7.58 -2.39 -0.02 3.10 16 9 C -0.15 -3.18 9.38 71.98 0.68 -2.51 16 10 N -0.72 -25.84 4.95 -446.10 -2.21 -28.05 16 11 C 0.53 23.15 7.54 87.66 0.66 23.81 16 12 O -0.56 -28.06 14.65 -3.04 -0.04 -28.11 16 13 C -0.13 -5.86 4.07 29.85 0.12 -5.74 16 14 C 0.09 4.55 1.97 -12.29 -0.02 4.53 16 15 H 0.02 1.06 7.91 -2.39 -0.02 1.04 16 16 C -0.49 -27.39 7.27 25.60 0.19 -27.21 16 17 H 0.03 1.91 7.82 -2.91 -0.02 1.89 16 18 C 0.03 1.69 5.12 84.65 0.43 2.13 16 19 N -0.89 -46.98 7.99 21.45 0.17 -46.81 16 20 Si 0.93 45.47 29.54 68.60 2.03 47.49 16 21 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 22 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 23 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 24 C -0.05 -2.46 4.69 -19.87 -0.09 -2.55 16 25 C -0.15 -6.40 9.71 22.27 0.22 -6.18 16 26 C -0.14 -5.08 10.05 22.27 0.22 -4.86 16 27 C -0.15 -5.19 10.05 22.27 0.22 -4.97 16 28 C -0.15 -5.70 10.05 22.27 0.22 -5.48 16 29 C -0.08 -3.69 7.45 22.27 0.17 -3.52 16 30 H 0.06 0.54 8.14 -2.39 -0.02 0.53 16 31 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 32 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.42 4.97 7.89 -92.71 -0.73 4.24 16 38 H 0.10 1.40 7.56 -2.39 -0.02 1.38 16 39 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.41 13.97 7.79 -92.71 -0.72 13.25 16 42 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 43 H 0.12 5.71 4.71 -2.39 -0.01 5.70 16 44 H 0.26 13.45 8.31 -92.71 -0.77 12.67 16 45 H 0.11 4.38 8.06 -2.91 -0.02 4.36 16 46 H 0.13 3.94 8.06 -2.91 -0.02 3.92 16 47 H 0.14 3.75 8.06 -2.91 -0.02 3.72 16 48 H 0.12 4.12 8.06 -2.91 -0.02 4.10 16 49 H 0.13 5.91 5.18 -2.91 -0.02 5.89 16 Total: -1.00 -69.95 397.32 2.04 -67.91 By element: Atomic # 1 Polarization: 37.42 SS G_CDS: -0.50 Total: 36.93 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: 5.17 Total: -13.50 kcal Atomic # 7 Polarization: -85.89 SS G_CDS: -4.56 Total: -90.45 kcal Atomic # 8 Polarization: -48.28 SS G_CDS: -0.09 Total: -48.38 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Total: -69.95 2.04 -67.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650217339.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.536 kcal (2) G-P(sol) polarization free energy of solvation -69.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds