Wall clock time and date at job start Tue Mar 31 2020 17:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47384 * 2 1 4 4 N 1.46492 * 109.47267 * 180.02562 * 3 2 1 5 5 C 1.34782 * 119.99990 * 179.97438 * 4 3 2 6 6 O 1.21275 * 120.00021 * 359.97438 * 5 4 3 7 7 C 1.50704 * 120.00085 * 179.97438 * 5 4 3 8 8 H 1.09004 * 109.46768 * 300.00130 * 7 5 4 9 9 C 1.52997 * 109.47108 * 59.99877 * 7 5 4 10 10 N 1.46496 * 109.47045 * 179.97438 * 7 5 4 11 11 C 1.34776 * 119.99598 * 154.99640 * 10 7 5 12 12 O 1.21278 * 120.00483 * 0.02562 * 11 10 7 13 13 C 1.50706 * 119.99651 * 180.02562 * 11 10 7 14 14 C 1.53000 * 109.46999 * 180.02562 * 13 11 10 15 15 H 1.09002 * 109.46924 * 55.00051 * 14 13 11 16 16 C 1.50694 * 109.47217 * 295.00237 * 14 13 11 17 17 H 1.08002 * 119.99897 * 325.84914 * 16 14 13 18 18 C 1.37882 * 120.00397 * 145.85239 * 16 14 13 19 19 N 1.31513 * 119.99598 * 6.11522 * 18 16 14 20 20 Si 1.86793 * 120.00263 * 186.11674 * 18 16 14 21 21 H 1.48505 * 109.47426 * 89.99505 * 20 18 16 22 22 H 1.48495 * 109.47525 * 209.99956 * 20 18 16 23 23 H 1.48501 * 109.47064 * 329.99900 * 20 18 16 24 24 C 1.50700 * 109.47277 * 174.99976 * 14 13 11 25 25 C 1.38237 * 119.99817 * 63.45916 * 24 14 13 26 26 C 1.38234 * 119.99756 * 179.78839 * 25 24 14 27 27 C 1.38230 * 120.00027 * 0.44283 * 26 25 24 28 28 C 1.38242 * 120.00261 * 359.80898 * 27 26 25 29 29 C 1.38229 * 119.99406 * 359.97438 * 28 27 26 30 30 H 1.08996 * 109.46928 * 60.00382 * 1 2 3 31 31 H 1.09003 * 109.46906 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46956 * 300.00390 * 1 2 3 33 33 H 1.08999 * 109.46956 * 239.99610 * 2 1 3 34 34 H 1.09004 * 109.46775 * 119.99903 * 2 1 3 35 35 H 1.09002 * 109.47145 * 59.99417 * 3 2 1 36 36 H 1.09008 * 109.46830 * 300.00160 * 3 2 1 37 37 H 0.96994 * 120.00177 * 359.97438 * 4 3 2 38 38 H 1.09011 * 109.47311 * 300.00300 * 9 7 5 39 39 H 1.09000 * 109.47020 * 59.99715 * 9 7 5 40 40 H 1.08999 * 109.47184 * 180.02562 * 9 7 5 41 41 H 0.96997 * 120.00238 * 335.00163 * 10 7 5 42 42 H 1.09001 * 109.47100 * 300.00024 * 13 11 10 43 43 H 1.08998 * 109.46995 * 60.00289 * 13 11 10 44 44 H 0.97001 * 119.99752 * 180.02562 * 19 18 16 45 45 H 1.07994 * 119.99832 * 359.97438 * 25 24 14 46 46 H 1.08003 * 120.00228 * 180.27204 * 26 25 24 47 47 H 1.08004 * 120.00312 * 179.83162 * 27 26 25 48 48 H 1.07992 * 120.00107 * 180.02562 * 28 27 26 49 49 H 1.08004 * 120.00032 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1790 2.6096 -0.0012 6 8 3.5726 3.6599 -0.0018 7 6 5.6860 2.6096 -0.0013 8 1 6.0493 2.0962 0.8890 9 6 6.1959 1.8877 -1.2501 10 7 6.1743 3.9908 -0.0027 11 6 7.3963 4.2739 0.4904 12 8 8.0918 3.3853 0.9347 13 6 7.8984 5.6949 0.4895 14 6 9.3013 5.7404 1.0985 15 1 9.9522 5.0491 0.5633 16 6 9.2318 5.3430 2.5504 17 1 8.3671 5.6062 3.1415 18 6 10.2722 4.6434 3.1243 19 7 11.3751 4.4274 2.4413 20 14 10.1151 4.0023 4.8717 21 1 9.5368 2.6347 4.8472 22 1 11.4569 3.9611 5.5064 23 1 9.2264 4.9015 5.6508 24 6 9.8525 7.1385 0.9861 25 6 9.2324 8.1812 1.6487 26 6 9.7406 9.4629 1.5492 27 6 10.8636 9.7033 0.7798 28 6 11.4808 8.6614 0.1131 29 6 10.9751 7.3790 0.2162 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9563 0.8899 36 1 1.6767 1.9563 -0.8900 37 1 3.9900 0.6024 -0.0006 38 1 5.8325 0.8600 -1.2496 39 1 5.8325 2.4010 -2.1404 40 1 7.2859 1.8873 -1.2500 41 1 5.6182 4.7015 -0.3583 42 1 7.9349 6.0667 -0.5344 43 1 7.2258 6.3182 1.0787 44 1 12.1068 3.9349 2.8448 45 1 8.3526 7.9941 2.2463 46 1 9.2587 10.2769 2.0703 47 1 11.2592 10.7051 0.6999 48 1 12.3583 8.8491 -0.4876 49 1 11.4575 6.5648 -0.3043 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650217346.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:23 Heat of formation + Delta-G solvation = -66.704500 kcal Electronic energy + Delta-G solvation = -28189.888851 eV Core-core repulsion = 24309.113077 eV Total energy + Delta-G solvation = -3880.775774 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.23681 -38.84242 -38.08621 -36.11532 -34.73673 -33.79388 -32.96534 -31.48752 -30.49276 -29.95657 -28.51784 -26.68397 -25.59805 -24.03273 -22.64196 -22.00537 -21.57467 -20.49642 -19.90285 -19.28713 -17.50465 -16.63107 -16.43546 -16.13159 -16.01899 -15.51651 -15.27017 -14.81325 -14.48859 -14.25529 -14.04222 -13.78212 -13.76168 -13.32763 -13.14032 -12.90428 -12.61126 -12.47503 -12.40832 -12.35343 -12.22997 -11.94480 -11.72934 -11.57551 -11.54481 -11.44540 -11.28362 -10.84020 -10.64954 -10.53741 -10.21270 -10.03721 -9.88962 -9.40876 -9.32564 -9.04420 -8.85929 -8.61925 -8.29865 -7.99576 -7.55976 -5.90084 -3.89076 2.33839 2.39301 2.48720 2.83844 3.40623 3.45906 3.48103 3.56699 3.76452 4.41794 4.55111 4.55592 4.56852 4.80112 4.83348 5.10155 5.19101 5.23314 5.23606 5.37311 5.42700 5.50351 5.60176 5.70469 5.71173 5.72570 5.77786 5.79646 5.88327 5.94592 6.15175 6.16215 6.18736 6.26957 6.34441 6.46157 6.59181 6.82131 6.87610 6.95985 7.09570 7.26638 7.35826 7.49391 7.57538 7.90204 7.99798 8.00813 8.08739 8.15207 8.43095 9.08572 9.11626 9.72635 11.20119 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.013265 B = 0.002755 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.340678 B =10159.555207 C =11272.206407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.137 4.137 3 C 0.118 3.882 4 N -0.731 5.731 5 C 0.513 3.487 6 O -0.535 6.535 7 C 0.128 3.872 8 H 0.112 0.888 9 C -0.157 4.157 10 N -0.734 5.734 11 C 0.517 3.483 12 O -0.496 6.496 13 C -0.121 4.121 14 C 0.081 3.919 15 H 0.072 0.928 16 C -0.491 4.491 17 H 0.050 0.950 18 C 0.079 3.921 19 N -0.881 5.881 20 Si 0.886 3.114 21 H -0.281 1.281 22 H -0.289 1.289 23 H -0.276 1.276 24 C -0.021 4.021 25 C -0.115 4.115 26 C -0.132 4.132 27 C -0.156 4.156 28 C -0.128 4.128 29 C -0.118 4.118 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.402 0.598 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.078 0.922 41 H 0.402 0.598 42 H 0.066 0.934 43 H 0.078 0.922 44 H 0.258 0.742 45 H 0.113 0.887 46 H 0.105 0.895 47 H 0.103 0.897 48 H 0.105 0.895 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.298 -5.324 -8.509 18.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.175 4.175 3 C -0.006 4.006 4 N -0.384 5.384 5 C 0.299 3.701 6 O -0.411 6.411 7 C 0.018 3.982 8 H 0.130 0.870 9 C -0.216 4.216 10 N -0.391 5.391 11 C 0.304 3.696 12 O -0.367 6.367 13 C -0.162 4.162 14 C 0.062 3.938 15 H 0.090 0.910 16 C -0.529 4.529 17 H 0.068 0.932 18 C -0.124 4.124 19 N -0.519 5.519 20 Si 0.714 3.286 21 H -0.207 1.207 22 H -0.215 1.215 23 H -0.201 1.201 24 C -0.022 4.022 25 C -0.133 4.133 26 C -0.150 4.150 27 C -0.174 4.174 28 C -0.147 4.147 29 C -0.137 4.137 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.237 0.763 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.097 0.903 41 H 0.238 0.762 42 H 0.085 0.915 43 H 0.096 0.904 44 H 0.068 0.932 45 H 0.131 0.869 46 H 0.123 0.877 47 H 0.121 0.879 48 H 0.123 0.877 49 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -15.015 -5.298 -8.140 17.882 hybrid contribution -0.045 -0.470 1.013 1.118 sum -15.060 -5.768 -7.126 17.631 Atomic orbital electron populations 1.21679 0.94534 1.02165 1.02374 1.21746 0.97016 0.95834 1.02867 1.21409 0.79489 0.97166 1.02529 1.45970 1.07345 1.08790 1.76299 1.20889 0.90261 0.83697 0.75252 1.90687 1.70172 1.31263 1.48980 1.20593 0.89141 0.86984 1.01447 0.87006 1.22135 1.03603 0.99305 0.96547 1.46041 1.19168 1.07410 1.66495 1.20948 0.79882 0.92481 0.76273 1.90749 1.55315 1.48132 1.42535 1.21796 1.01531 0.91871 1.00968 1.17831 0.89366 0.89098 0.97530 0.90976 1.20700 1.03303 1.34851 0.94018 0.93152 1.24798 0.95190 0.95219 0.97228 1.69916 1.04605 1.40392 1.36957 0.86704 0.77057 0.79568 0.85242 1.20716 1.21548 1.20140 1.20733 0.93676 0.96868 0.90894 1.20956 1.00622 0.92068 0.99654 1.20971 0.97199 0.96844 0.99969 1.20790 0.97810 0.98049 1.00746 1.20975 0.99544 0.93581 1.00557 1.21076 0.97103 0.95726 0.99751 0.92343 0.92166 0.92306 0.91226 0.91173 0.91429 0.91452 0.76304 0.91846 0.92126 0.90286 0.76244 0.91516 0.90365 0.93199 0.86895 0.87696 0.87851 0.87681 0.86856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.91 37.16 0.37 -0.39 16 2 C -0.14 -0.76 6.05 -26.73 -0.16 -0.92 16 3 C 0.12 0.97 5.67 -4.05 -0.02 0.95 16 4 N -0.73 -6.74 5.45 -60.30 -0.33 -7.07 16 5 C 0.51 6.61 7.22 -10.98 -0.08 6.53 16 6 O -0.54 -8.62 15.84 5.56 0.09 -8.53 16 7 C 0.13 1.75 2.98 -69.08 -0.21 1.54 16 8 H 0.11 1.67 7.58 -51.93 -0.39 1.27 16 9 C -0.16 -1.77 9.38 37.16 0.35 -1.43 16 10 N -0.73 -11.74 4.95 -54.93 -0.27 -12.02 16 11 C 0.52 10.35 7.54 -10.98 -0.08 10.27 16 12 O -0.50 -12.02 14.65 5.56 0.08 -11.94 16 13 C -0.12 -2.40 4.95 -27.88 -0.14 -2.54 16 14 C 0.08 1.94 1.67 -92.93 -0.16 1.78 16 15 H 0.07 1.97 6.98 -51.93 -0.36 1.61 16 16 C -0.49 -13.29 6.37 -34.44 -0.22 -13.50 16 17 H 0.05 1.37 7.82 -52.49 -0.41 0.96 16 18 C 0.08 2.23 5.45 -17.82 -0.10 2.13 16 19 N -0.88 -25.89 12.87 55.43 0.71 -25.18 16 20 Si 0.89 22.35 29.54 -169.99 -5.02 17.33 16 21 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 C -0.02 -0.47 4.77 -104.62 -0.50 -0.97 16 25 C -0.11 -2.37 8.86 -39.58 -0.35 -2.72 16 26 C -0.13 -2.42 10.05 -39.59 -0.40 -2.82 16 27 C -0.16 -2.77 10.05 -39.58 -0.40 -3.16 16 28 C -0.13 -2.41 10.05 -39.58 -0.40 -2.80 16 29 C -0.12 -2.53 9.67 -39.59 -0.38 -2.91 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 37 H 0.40 2.70 7.89 -40.82 -0.32 2.38 16 38 H 0.06 0.52 7.56 -51.92 -0.39 0.13 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.40 5.94 7.79 -40.82 -0.32 5.62 16 42 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.08 1.47 7.78 -51.93 -0.40 1.06 16 44 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 45 H 0.11 2.27 7.76 -52.49 -0.41 1.86 16 46 H 0.10 1.64 8.06 -52.48 -0.42 1.21 16 47 H 0.10 1.53 8.06 -52.48 -0.42 1.11 16 48 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 49 H 0.11 2.43 7.95 -52.48 -0.42 2.01 16 LS Contribution 408.27 15.07 6.15 6.15 Total: -1.00 -33.81 408.27 -9.52 -43.33 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -8.06 Total: 8.89 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -2.87 Total: -10.96 kcal Atomic # 7 Polarization: -44.38 SS G_CDS: 0.11 Total: -44.27 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: 0.17 Total: -20.47 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.81 -9.52 -43.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650217346.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.378 kcal (2) G-P(sol) polarization free energy of solvation -33.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds