Wall clock time and date at job start Tue Mar 31 2020 17:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47384 * 2 1 4 4 N 1.46492 * 109.47267 * 180.02562 * 3 2 1 5 5 C 1.34782 * 119.99990 * 179.97438 * 4 3 2 6 6 O 1.21275 * 120.00021 * 359.97438 * 5 4 3 7 7 C 1.50704 * 120.00085 * 179.97438 * 5 4 3 8 8 H 1.09004 * 109.46768 * 300.00130 * 7 5 4 9 9 C 1.52997 * 109.47108 * 59.99877 * 7 5 4 10 10 N 1.46496 * 109.47045 * 179.97438 * 7 5 4 11 11 C 1.34776 * 119.99598 * 154.99640 * 10 7 5 12 12 O 1.21278 * 120.00483 * 0.02562 * 11 10 7 13 13 C 1.50706 * 119.99651 * 180.02562 * 11 10 7 14 14 C 1.53000 * 109.46999 * 180.02562 * 13 11 10 15 15 H 1.09002 * 109.46924 * 55.00051 * 14 13 11 16 16 C 1.50694 * 109.47217 * 295.00237 * 14 13 11 17 17 H 1.08002 * 119.99897 * 325.84914 * 16 14 13 18 18 C 1.37882 * 120.00397 * 145.85239 * 16 14 13 19 19 N 1.31513 * 119.99598 * 6.11522 * 18 16 14 20 20 Si 1.86793 * 120.00263 * 186.11674 * 18 16 14 21 21 H 1.48505 * 109.47426 * 89.99505 * 20 18 16 22 22 H 1.48495 * 109.47525 * 209.99956 * 20 18 16 23 23 H 1.48501 * 109.47064 * 329.99900 * 20 18 16 24 24 C 1.50700 * 109.47277 * 174.99976 * 14 13 11 25 25 C 1.38237 * 119.99817 * 63.45916 * 24 14 13 26 26 C 1.38234 * 119.99756 * 179.78839 * 25 24 14 27 27 C 1.38230 * 120.00027 * 0.44283 * 26 25 24 28 28 C 1.38242 * 120.00261 * 359.80898 * 27 26 25 29 29 C 1.38229 * 119.99406 * 359.97438 * 28 27 26 30 30 H 1.08996 * 109.46928 * 60.00382 * 1 2 3 31 31 H 1.09003 * 109.46906 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46956 * 300.00390 * 1 2 3 33 33 H 1.08999 * 109.46956 * 239.99610 * 2 1 3 34 34 H 1.09004 * 109.46775 * 119.99903 * 2 1 3 35 35 H 1.09002 * 109.47145 * 59.99417 * 3 2 1 36 36 H 1.09008 * 109.46830 * 300.00160 * 3 2 1 37 37 H 0.96994 * 120.00177 * 359.97438 * 4 3 2 38 38 H 1.09011 * 109.47311 * 300.00300 * 9 7 5 39 39 H 1.09000 * 109.47020 * 59.99715 * 9 7 5 40 40 H 1.08999 * 109.47184 * 180.02562 * 9 7 5 41 41 H 0.96997 * 120.00238 * 335.00163 * 10 7 5 42 42 H 1.09001 * 109.47100 * 300.00024 * 13 11 10 43 43 H 1.08998 * 109.46995 * 60.00289 * 13 11 10 44 44 H 0.97001 * 119.99752 * 180.02562 * 19 18 16 45 45 H 1.07994 * 119.99832 * 359.97438 * 25 24 14 46 46 H 1.08003 * 120.00228 * 180.27204 * 26 25 24 47 47 H 1.08004 * 120.00312 * 179.83162 * 27 26 25 48 48 H 1.07992 * 120.00107 * 180.02562 * 28 27 26 49 49 H 1.08004 * 120.00032 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1790 2.6096 -0.0012 6 8 3.5726 3.6599 -0.0018 7 6 5.6860 2.6096 -0.0013 8 1 6.0493 2.0962 0.8890 9 6 6.1959 1.8877 -1.2501 10 7 6.1743 3.9908 -0.0027 11 6 7.3963 4.2739 0.4904 12 8 8.0918 3.3853 0.9347 13 6 7.8984 5.6949 0.4895 14 6 9.3013 5.7404 1.0985 15 1 9.9522 5.0491 0.5633 16 6 9.2318 5.3430 2.5504 17 1 8.3671 5.6062 3.1415 18 6 10.2722 4.6434 3.1243 19 7 11.3751 4.4274 2.4413 20 14 10.1151 4.0023 4.8717 21 1 9.5368 2.6347 4.8472 22 1 11.4569 3.9611 5.5064 23 1 9.2264 4.9015 5.6508 24 6 9.8525 7.1385 0.9861 25 6 9.2324 8.1812 1.6487 26 6 9.7406 9.4629 1.5492 27 6 10.8636 9.7033 0.7798 28 6 11.4808 8.6614 0.1131 29 6 10.9751 7.3790 0.2162 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9563 0.8899 36 1 1.6767 1.9563 -0.8900 37 1 3.9900 0.6024 -0.0006 38 1 5.8325 0.8600 -1.2496 39 1 5.8325 2.4010 -2.1404 40 1 7.2859 1.8873 -1.2500 41 1 5.6182 4.7015 -0.3583 42 1 7.9349 6.0667 -0.5344 43 1 7.2258 6.3182 1.0787 44 1 12.1068 3.9349 2.8448 45 1 8.3526 7.9941 2.2463 46 1 9.2587 10.2769 2.0703 47 1 11.2592 10.7051 0.6999 48 1 12.3583 8.8491 -0.4876 49 1 11.4575 6.5648 -0.3043 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650217346.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:22 Heat of formation + Delta-G solvation = -88.576258 kcal Electronic energy + Delta-G solvation = -28190.837282 eV Core-core repulsion = 24309.113077 eV Total energy + Delta-G solvation = -3881.724205 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -41.40498 -40.33734 -39.60126 -36.92791 -36.15961 -35.51855 -33.77902 -33.39218 -31.75041 -31.47972 -30.02494 -27.47125 -27.39341 -25.27829 -24.18776 -23.11942 -22.59765 -21.78972 -21.16557 -20.90726 -18.79528 -18.37947 -17.81876 -17.41979 -16.98240 -16.79095 -16.53340 -16.18839 -16.04490 -15.72103 -15.47750 -15.31664 -14.88882 -14.59295 -14.25243 -14.00480 -13.93513 -13.82114 -13.58684 -13.51743 -13.34344 -13.28287 -13.12354 -12.93463 -12.84476 -12.65541 -12.50483 -12.41411 -12.04368 -11.81605 -11.75759 -11.68395 -11.30031 -11.01678 -10.94681 -10.65336 -10.35709 -10.20680 -10.00924 -9.52766 -9.17694 -8.02842 -6.05109 0.79404 0.85513 1.36380 1.40098 1.43676 1.45619 1.80682 2.00791 2.47396 2.50943 3.20089 3.37242 3.57233 3.91064 4.01068 4.06145 4.13168 4.23217 4.27354 4.34740 4.37234 4.42840 4.56317 4.63017 4.65007 4.66633 4.73651 4.75149 4.81430 4.86481 4.94566 5.00720 5.15352 5.18150 5.24001 5.24405 5.29047 5.39102 5.44311 5.52727 5.54156 5.65621 5.80432 5.85134 5.96759 6.19215 6.39490 6.43332 6.48502 6.70965 7.02066 7.06937 7.54398 7.57917 9.06804 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.013265 B = 0.002755 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.340678 B =10159.555207 C =11272.206407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.128 4.128 3 C 0.116 3.884 4 N -0.712 5.712 5 C 0.518 3.482 6 O -0.570 6.570 7 C 0.123 3.877 8 H 0.099 0.901 9 C -0.149 4.149 10 N -0.720 5.720 11 C 0.518 3.482 12 O -0.546 6.546 13 C -0.117 4.117 14 C 0.086 3.914 15 H 0.028 0.972 16 C -0.486 4.486 17 H 0.043 0.957 18 C 0.026 3.974 19 N -0.915 5.915 20 Si 0.934 3.066 21 H -0.286 1.286 22 H -0.286 1.286 23 H -0.267 1.267 24 C -0.047 4.047 25 C -0.129 4.129 26 C -0.127 4.127 27 C -0.148 4.148 28 C -0.128 4.128 29 C -0.141 4.141 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.054 0.946 36 H 0.063 0.937 37 H 0.417 0.583 38 H 0.099 0.901 39 H 0.069 0.931 40 H 0.053 0.947 41 H 0.410 0.590 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.254 0.746 45 H 0.112 0.888 46 H 0.139 0.861 47 H 0.143 0.857 48 H 0.133 0.867 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.772 -4.345 -8.904 19.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.166 4.166 3 C -0.007 4.007 4 N -0.365 5.365 5 C 0.303 3.697 6 O -0.449 6.449 7 C 0.014 3.986 8 H 0.117 0.883 9 C -0.207 4.207 10 N -0.376 5.376 11 C 0.306 3.694 12 O -0.422 6.422 13 C -0.157 4.157 14 C 0.066 3.934 15 H 0.046 0.954 16 C -0.524 4.524 17 H 0.062 0.938 18 C -0.173 4.173 19 N -0.554 5.554 20 Si 0.761 3.239 21 H -0.213 1.213 22 H -0.212 1.212 23 H -0.192 1.192 24 C -0.047 4.047 25 C -0.147 4.147 26 C -0.145 4.145 27 C -0.165 4.165 28 C -0.146 4.146 29 C -0.160 4.160 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.254 0.746 38 H 0.117 0.883 39 H 0.088 0.912 40 H 0.072 0.928 41 H 0.247 0.753 42 H 0.109 0.891 43 H 0.109 0.891 44 H 0.063 0.937 45 H 0.130 0.870 46 H 0.157 0.843 47 H 0.161 0.839 48 H 0.151 0.849 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -16.546 -4.345 -8.550 19.125 hybrid contribution 0.327 -0.724 1.057 1.322 sum -16.219 -5.068 -7.493 18.571 Atomic orbital electron populations 1.21693 0.94080 1.02824 1.02233 1.21707 0.97284 0.93821 1.03787 1.21527 0.78417 0.99046 1.01741 1.45867 1.07989 1.08318 1.74342 1.20643 0.89620 0.84199 0.75208 1.90675 1.70536 1.32647 1.51078 1.20767 0.90094 0.85538 1.02197 0.88341 1.22075 1.01919 1.01265 0.95480 1.45835 1.17846 1.09020 1.64923 1.20953 0.80595 0.92055 0.75815 1.90730 1.56951 1.49316 1.45185 1.21688 0.99419 0.92322 1.02305 1.17598 0.90826 0.89445 0.95488 0.95372 1.20962 1.02276 1.33760 0.95433 0.93841 1.25449 0.95332 0.96180 1.00324 1.70047 1.05238 1.41944 1.38209 0.85935 0.77113 0.78781 0.82053 1.21264 1.21196 1.19166 1.20581 0.94781 0.96403 0.92952 1.21031 1.00971 0.92858 0.99842 1.21357 0.97148 0.96576 0.99439 1.21259 0.96873 0.99482 0.98927 1.21289 1.00201 0.92541 1.00531 1.21099 0.97355 0.96866 1.00655 0.92285 0.91088 0.92739 0.89910 0.90608 0.92718 0.91825 0.74583 0.88255 0.91176 0.92776 0.75278 0.89057 0.89118 0.93717 0.86976 0.84313 0.83875 0.84939 0.88595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.91 71.98 0.71 -0.53 16 2 C -0.13 -1.14 6.05 30.59 0.19 -0.96 16 3 C 0.12 1.75 5.67 86.38 0.49 2.24 16 4 N -0.71 -12.00 5.45 -463.07 -2.52 -14.52 16 5 C 0.52 12.93 7.22 87.66 0.63 13.56 16 6 O -0.57 -18.14 15.84 -3.01 -0.05 -18.18 16 7 C 0.12 3.34 2.98 44.25 0.13 3.48 16 8 H 0.10 3.00 7.58 -2.38 -0.02 2.98 16 9 C -0.15 -3.24 9.38 71.98 0.68 -2.57 16 10 N -0.72 -23.29 4.95 -446.10 -2.21 -25.50 16 11 C 0.52 21.43 7.54 87.66 0.66 22.09 16 12 O -0.55 -27.80 14.65 -3.02 -0.04 -27.85 16 13 C -0.12 -4.74 4.95 29.85 0.15 -4.59 16 14 C 0.09 4.28 1.67 -12.29 -0.02 4.26 16 15 H 0.03 1.64 6.98 -2.39 -0.02 1.62 16 16 C -0.49 -27.18 6.37 25.60 0.16 -27.01 16 17 H 0.04 2.42 7.82 -2.91 -0.02 2.40 16 18 C 0.03 1.52 5.45 84.66 0.46 1.98 16 19 N -0.91 -56.19 12.87 21.45 0.28 -55.92 16 20 Si 0.93 47.01 29.54 68.60 2.03 49.04 16 21 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 22 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 23 H -0.27 -12.88 7.11 99.48 0.71 -12.18 16 24 C -0.05 -2.13 4.77 -19.87 -0.09 -2.22 16 25 C -0.13 -5.22 8.86 22.27 0.20 -5.02 16 26 C -0.13 -4.29 10.05 22.27 0.22 -4.07 16 27 C -0.15 -4.70 10.05 22.27 0.22 -4.48 16 28 C -0.13 -4.54 10.05 22.27 0.22 -4.32 16 29 C -0.14 -6.14 9.67 22.27 0.22 -5.93 16 30 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 35 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 37 H 0.42 4.62 7.89 -92.71 -0.73 3.89 16 38 H 0.10 1.42 7.56 -2.38 -0.02 1.40 16 39 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.05 1.48 8.14 -2.39 -0.02 1.47 16 41 H 0.41 12.03 7.79 -92.71 -0.72 11.31 16 42 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 43 H 0.09 3.42 7.78 -2.39 -0.02 3.40 16 44 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 45 H 0.11 4.44 7.76 -2.91 -0.02 4.42 16 46 H 0.14 3.72 8.06 -2.91 -0.02 3.69 16 47 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 48 H 0.13 3.90 8.06 -2.91 -0.02 3.88 16 49 H 0.10 4.37 7.95 -2.91 -0.02 4.35 16 Total: -1.00 -76.98 408.27 2.20 -74.77 By element: Atomic # 1 Polarization: 32.75 SS G_CDS: -0.51 Total: 32.25 kcal Atomic # 6 Polarization: -19.32 SS G_CDS: 5.23 Total: -14.09 kcal Atomic # 7 Polarization: -91.49 SS G_CDS: -4.46 Total: -95.94 kcal Atomic # 8 Polarization: -45.94 SS G_CDS: -0.09 Total: -46.03 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.04 kcal Total: -76.98 2.20 -74.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650217346.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.802 kcal (2) G-P(sol) polarization free energy of solvation -76.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds