Wall clock time and date at job start Tue Mar 31 2020 17:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47247 * 2 1 4 4 N 1.46506 * 109.47066 * 179.97438 * 3 2 1 5 5 C 1.34771 * 119.99928 * 179.97438 * 4 3 2 6 6 O 1.21282 * 120.00102 * 0.02562 * 5 4 3 7 7 C 1.50692 * 120.00027 * 180.02562 * 5 4 3 8 8 H 1.09008 * 109.47173 * 60.00293 * 7 5 4 9 9 C 1.53001 * 109.47417 * 300.00132 * 7 5 4 10 10 N 1.46509 * 109.47400 * 180.02562 * 7 5 4 11 11 C 1.34767 * 120.00042 * 205.00337 * 10 7 5 12 12 O 1.21286 * 120.00515 * 359.97438 * 11 10 7 13 13 C 1.50703 * 119.99879 * 179.97438 * 11 10 7 14 14 C 1.53004 * 109.47084 * 179.97438 * 13 11 10 15 15 H 1.09000 * 109.46759 * 55.00002 * 14 13 11 16 16 C 1.50695 * 109.47125 * 294.99773 * 14 13 11 17 17 H 1.07995 * 120.00351 * 325.84970 * 16 14 13 18 18 C 1.37878 * 119.99887 * 145.84231 * 16 14 13 19 19 N 1.31510 * 120.00106 * 6.12284 * 18 16 14 20 20 Si 1.86802 * 120.00175 * 186.12229 * 18 16 14 21 21 H 1.48505 * 109.46756 * 359.97438 * 20 18 16 22 22 H 1.48492 * 109.47513 * 120.00030 * 20 18 16 23 23 H 1.48496 * 109.47196 * 240.00535 * 20 18 16 24 24 C 1.50703 * 109.46916 * 175.00144 * 14 13 11 25 25 C 1.38230 * 120.00362 * 63.46982 * 24 14 13 26 26 C 1.38231 * 120.00000 * 179.78695 * 25 24 14 27 27 C 1.38235 * 119.99932 * 0.44371 * 26 25 24 28 28 C 1.38225 * 120.00232 * 359.80921 * 27 26 25 29 29 C 1.38235 * 120.00026 * 359.97438 * 28 27 26 30 30 H 1.09000 * 109.47332 * 60.00062 * 1 2 3 31 31 H 1.08999 * 109.47031 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47105 * 300.00193 * 1 2 3 33 33 H 1.08999 * 109.47105 * 239.99807 * 2 1 3 34 34 H 1.09005 * 109.46961 * 119.99633 * 2 1 3 35 35 H 1.08999 * 109.47226 * 59.99880 * 3 2 1 36 36 H 1.08996 * 109.46987 * 299.99448 * 3 2 1 37 37 H 0.96998 * 119.99526 * 0.02562 * 4 3 2 38 38 H 1.08998 * 109.46651 * 59.99776 * 9 7 5 39 39 H 1.08999 * 109.47002 * 300.00030 * 9 7 5 40 40 H 1.09001 * 109.47289 * 179.97438 * 9 7 5 41 41 H 0.96996 * 119.99532 * 24.99495 * 10 7 5 42 42 H 1.08999 * 109.47348 * 299.99790 * 13 11 10 43 43 H 1.09001 * 109.47239 * 59.99983 * 13 11 10 44 44 H 0.96997 * 120.00344 * 179.97438 * 19 18 16 45 45 H 1.08002 * 119.99907 * 359.97438 * 25 24 14 46 46 H 1.07999 * 119.99776 * 180.27326 * 26 25 24 47 47 H 1.07999 * 119.99520 * 179.83257 * 27 26 25 48 48 H 1.07999 * 120.00520 * 180.02562 * 28 27 26 49 49 H 1.08001 * 119.99957 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1789 2.6096 0.0002 6 8 3.5726 3.6600 -0.0002 7 6 5.6859 2.6096 0.0003 8 1 6.0493 2.0954 -0.8896 9 6 6.1959 1.8888 1.2498 10 7 6.1743 3.9909 0.0004 11 6 7.3962 4.2736 -0.4929 12 8 8.0918 3.3845 -0.9365 13 6 7.8984 5.6945 -0.4933 14 6 9.3013 5.7394 -1.1022 15 1 9.2821 5.2849 -2.0928 16 6 10.2568 4.9792 -0.2191 17 1 10.1223 4.9843 0.8524 18 6 11.3028 4.2769 -0.7791 19 7 11.5392 4.3670 -2.0697 20 14 12.3843 3.1972 0.2952 21 1 11.9128 3.2680 1.7016 22 1 12.3114 1.7929 -0.1818 23 1 13.7890 3.6732 0.2202 24 6 9.7540 7.1724 -1.2156 25 6 9.9258 7.9352 -0.0757 26 6 10.3453 9.2482 -0.1795 27 6 10.5841 9.8012 -1.4238 28 6 10.4073 9.0400 -2.5639 29 6 9.9921 7.7256 -2.4599 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8901 35 1 1.6767 1.9564 0.8900 36 1 1.6768 1.9563 -0.8900 37 1 3.9900 0.6024 0.0006 38 1 5.8325 0.8612 1.2501 39 1 5.8325 2.4029 2.1395 40 1 7.2859 1.8884 1.2495 41 1 5.6182 4.7018 0.3554 42 1 7.2258 6.3174 -1.0830 43 1 7.9349 6.0672 0.5304 44 1 12.2753 3.8732 -2.4636 45 1 9.7352 7.5044 0.8962 46 1 10.4837 9.8429 0.7113 47 1 10.9092 10.8279 -1.5049 48 1 10.5943 9.4718 -3.5360 49 1 9.8544 7.1307 -3.3507 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650217348.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:29 Heat of formation + Delta-G solvation = -66.794090 kcal Electronic energy + Delta-G solvation = -28180.090478 eV Core-core repulsion = 24299.310818 eV Total energy + Delta-G solvation = -3880.779659 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.24238 -38.84330 -38.08629 -36.12262 -34.73187 -33.79577 -32.97286 -31.49115 -30.48399 -29.95698 -28.51688 -26.68478 -25.58897 -24.04297 -22.63795 -22.01268 -21.57673 -20.50053 -19.90296 -19.28887 -17.50258 -16.64823 -16.44495 -16.11777 -16.00755 -15.53779 -15.30894 -14.79981 -14.45444 -14.23070 -14.05431 -13.83945 -13.74723 -13.32607 -13.11887 -12.91139 -12.58919 -12.47868 -12.44901 -12.30744 -12.24632 -11.89069 -11.78165 -11.57199 -11.53920 -11.42884 -11.29046 -10.86789 -10.66223 -10.52264 -10.21186 -10.03943 -9.89254 -9.41108 -9.33617 -9.03571 -8.86954 -8.61195 -8.30962 -7.99579 -7.55960 -5.90492 -3.89609 2.33821 2.39364 2.47580 2.83300 3.38321 3.45350 3.47669 3.55960 3.77322 4.41021 4.54061 4.55216 4.56331 4.80139 4.82642 5.12411 5.18503 5.22559 5.23416 5.36757 5.43010 5.52177 5.59403 5.70441 5.70499 5.74524 5.77722 5.78897 5.88444 5.95510 6.16267 6.17754 6.22706 6.26499 6.34443 6.46067 6.59115 6.82071 6.87488 6.96013 7.09483 7.25819 7.35779 7.49364 7.57638 7.89695 7.99602 7.99799 8.08773 8.15135 8.42504 9.08445 9.11357 9.72035 11.19779 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.013277 B = 0.002759 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.334498 B =10147.567063 C =11610.885183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.137 4.137 3 C 0.118 3.882 4 N -0.731 5.731 5 C 0.513 3.487 6 O -0.536 6.536 7 C 0.129 3.871 8 H 0.111 0.889 9 C -0.159 4.159 10 N -0.734 5.734 11 C 0.517 3.483 12 O -0.497 6.497 13 C -0.121 4.121 14 C 0.080 3.920 15 H 0.072 0.928 16 C -0.490 4.490 17 H 0.051 0.949 18 C 0.078 3.922 19 N -0.881 5.881 20 Si 0.887 3.113 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.288 1.288 24 C -0.021 4.021 25 C -0.115 4.115 26 C -0.132 4.132 27 C -0.156 4.156 28 C -0.128 4.128 29 C -0.118 4.118 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.403 0.597 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.081 0.919 41 H 0.402 0.598 42 H 0.067 0.933 43 H 0.078 0.922 44 H 0.258 0.742 45 H 0.113 0.887 46 H 0.105 0.895 47 H 0.103 0.897 48 H 0.105 0.895 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.137 -4.672 4.340 18.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.175 4.175 3 C -0.006 4.006 4 N -0.384 5.384 5 C 0.299 3.701 6 O -0.412 6.412 7 C 0.020 3.980 8 H 0.129 0.871 9 C -0.217 4.217 10 N -0.391 5.391 11 C 0.304 3.696 12 O -0.368 6.368 13 C -0.162 4.162 14 C 0.061 3.939 15 H 0.090 0.910 16 C -0.527 4.527 17 H 0.069 0.931 18 C -0.125 4.125 19 N -0.518 5.518 20 Si 0.715 3.285 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.215 1.215 24 C -0.022 4.022 25 C -0.133 4.133 26 C -0.150 4.150 27 C -0.174 4.174 28 C -0.146 4.146 29 C -0.137 4.137 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.237 0.763 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.100 0.900 41 H 0.238 0.762 42 H 0.085 0.915 43 H 0.096 0.904 44 H 0.068 0.932 45 H 0.131 0.869 46 H 0.123 0.877 47 H 0.122 0.878 48 H 0.123 0.877 49 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -16.915 -4.631 3.847 17.954 hybrid contribution 0.742 -0.739 0.747 1.286 sum -16.173 -5.370 4.594 17.649 Atomic orbital electron populations 1.21677 0.94532 1.02171 1.02371 1.21747 0.97016 0.95832 1.02877 1.21412 0.79485 0.97169 1.02523 1.45974 1.07347 1.08803 1.76264 1.20895 0.90270 0.83691 0.75237 1.90687 1.70192 1.31264 1.49037 1.20583 0.89049 0.86959 1.01459 0.87097 1.22147 1.03880 0.99208 0.96507 1.46040 1.19042 1.07399 1.66642 1.20943 0.79513 0.92534 0.76568 1.90750 1.54447 1.48096 1.43484 1.21793 1.00391 0.91503 1.02471 1.17842 0.88434 0.87841 0.99780 0.90997 1.20717 1.10920 1.28918 0.92171 0.93095 1.24810 0.97142 0.95863 0.94698 1.69923 1.29757 1.41565 1.10592 0.86638 0.80115 0.80898 0.80838 1.19977 1.21076 1.21465 1.20733 0.93487 0.96339 0.91604 1.20944 1.00473 0.93168 0.98729 1.20969 1.01470 0.95933 0.96625 1.20785 1.04457 0.99058 0.93090 1.20976 1.01212 0.94982 0.97469 1.21086 1.00489 0.94165 0.97911 0.92307 0.92164 0.92345 0.91174 0.91217 0.91449 0.91433 0.76283 0.91906 0.92120 0.90046 0.76239 0.91476 0.90407 0.93245 0.86900 0.87699 0.87849 0.87678 0.86855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.91 37.16 0.37 -0.37 16 2 C -0.14 -0.74 6.05 -26.73 -0.16 -0.90 16 3 C 0.12 0.95 5.68 -4.04 -0.02 0.93 16 4 N -0.73 -6.62 5.45 -60.29 -0.33 -6.95 16 5 C 0.51 6.51 7.22 -10.99 -0.08 6.43 16 6 O -0.54 -8.50 15.84 5.56 0.09 -8.41 16 7 C 0.13 1.76 2.98 -69.08 -0.21 1.55 16 8 H 0.11 1.60 7.58 -51.92 -0.39 1.21 16 9 C -0.16 -1.90 9.38 37.16 0.35 -1.55 16 10 N -0.73 -11.74 4.95 -54.93 -0.27 -12.01 16 11 C 0.52 10.35 7.54 -10.99 -0.08 10.27 16 12 O -0.50 -12.00 14.65 5.55 0.08 -11.92 16 13 C -0.12 -2.40 4.95 -27.88 -0.14 -2.53 16 14 C 0.08 1.92 1.67 -92.92 -0.16 1.77 16 15 H 0.07 1.98 6.98 -51.93 -0.36 1.62 16 16 C -0.49 -13.09 6.37 -34.44 -0.22 -13.31 16 17 H 0.05 1.36 7.82 -52.49 -0.41 0.95 16 18 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 19 N -0.88 -25.85 12.87 55.43 0.71 -25.13 16 20 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 C -0.02 -0.47 4.77 -104.62 -0.50 -0.97 16 25 C -0.12 -2.36 8.86 -39.59 -0.35 -2.71 16 26 C -0.13 -2.41 10.05 -39.58 -0.40 -2.81 16 27 C -0.16 -2.77 10.05 -39.59 -0.40 -3.17 16 28 C -0.13 -2.42 10.05 -39.59 -0.40 -2.81 16 29 C -0.12 -2.54 9.67 -39.58 -0.38 -2.93 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.40 2.65 7.89 -40.82 -0.32 2.33 16 38 H 0.06 0.55 7.56 -51.93 -0.39 0.16 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.40 5.94 7.79 -40.82 -0.32 5.62 16 42 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.08 1.42 7.77 -51.93 -0.40 1.02 16 44 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 45 H 0.11 2.23 7.76 -52.49 -0.41 1.82 16 46 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 47 H 0.10 1.54 8.06 -52.49 -0.42 1.11 16 48 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 49 H 0.11 2.45 7.95 -52.49 -0.42 2.04 16 LS Contribution 408.27 15.07 6.15 6.15 Total: -1.00 -33.60 408.27 -9.52 -43.11 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -8.06 Total: 9.08 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: -2.87 Total: -11.02 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: 0.11 Total: -44.09 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: 0.17 Total: -20.33 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.60 -9.52 -43.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650217348.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.679 kcal (2) G-P(sol) polarization free energy of solvation -33.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds