Wall clock time and date at job start Tue Mar 31 2020 17:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47247 * 2 1 4 4 N 1.46506 * 109.47066 * 179.97438 * 3 2 1 5 5 C 1.34771 * 119.99928 * 179.97438 * 4 3 2 6 6 O 1.21282 * 120.00102 * 0.02562 * 5 4 3 7 7 C 1.50692 * 120.00027 * 180.02562 * 5 4 3 8 8 H 1.09008 * 109.47173 * 60.00293 * 7 5 4 9 9 C 1.53001 * 109.47417 * 300.00132 * 7 5 4 10 10 N 1.46509 * 109.47400 * 180.02562 * 7 5 4 11 11 C 1.34767 * 120.00042 * 205.00337 * 10 7 5 12 12 O 1.21286 * 120.00515 * 359.97438 * 11 10 7 13 13 C 1.50703 * 119.99879 * 179.97438 * 11 10 7 14 14 C 1.53004 * 109.47084 * 179.97438 * 13 11 10 15 15 H 1.09000 * 109.46759 * 55.00002 * 14 13 11 16 16 C 1.50695 * 109.47125 * 294.99773 * 14 13 11 17 17 H 1.07995 * 120.00351 * 325.84970 * 16 14 13 18 18 C 1.37878 * 119.99887 * 145.84231 * 16 14 13 19 19 N 1.31510 * 120.00106 * 6.12284 * 18 16 14 20 20 Si 1.86802 * 120.00175 * 186.12229 * 18 16 14 21 21 H 1.48505 * 109.46756 * 359.97438 * 20 18 16 22 22 H 1.48492 * 109.47513 * 120.00030 * 20 18 16 23 23 H 1.48496 * 109.47196 * 240.00535 * 20 18 16 24 24 C 1.50703 * 109.46916 * 175.00144 * 14 13 11 25 25 C 1.38230 * 120.00362 * 63.46982 * 24 14 13 26 26 C 1.38231 * 120.00000 * 179.78695 * 25 24 14 27 27 C 1.38235 * 119.99932 * 0.44371 * 26 25 24 28 28 C 1.38225 * 120.00232 * 359.80921 * 27 26 25 29 29 C 1.38235 * 120.00026 * 359.97438 * 28 27 26 30 30 H 1.09000 * 109.47332 * 60.00062 * 1 2 3 31 31 H 1.08999 * 109.47031 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47105 * 300.00193 * 1 2 3 33 33 H 1.08999 * 109.47105 * 239.99807 * 2 1 3 34 34 H 1.09005 * 109.46961 * 119.99633 * 2 1 3 35 35 H 1.08999 * 109.47226 * 59.99880 * 3 2 1 36 36 H 1.08996 * 109.46987 * 299.99448 * 3 2 1 37 37 H 0.96998 * 119.99526 * 0.02562 * 4 3 2 38 38 H 1.08998 * 109.46651 * 59.99776 * 9 7 5 39 39 H 1.08999 * 109.47002 * 300.00030 * 9 7 5 40 40 H 1.09001 * 109.47289 * 179.97438 * 9 7 5 41 41 H 0.96996 * 119.99532 * 24.99495 * 10 7 5 42 42 H 1.08999 * 109.47348 * 299.99790 * 13 11 10 43 43 H 1.09001 * 109.47239 * 59.99983 * 13 11 10 44 44 H 0.96997 * 120.00344 * 179.97438 * 19 18 16 45 45 H 1.08002 * 119.99907 * 359.97438 * 25 24 14 46 46 H 1.07999 * 119.99776 * 180.27326 * 26 25 24 47 47 H 1.07999 * 119.99520 * 179.83257 * 27 26 25 48 48 H 1.07999 * 120.00520 * 180.02562 * 28 27 26 49 49 H 1.08001 * 119.99957 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1789 2.6096 0.0002 6 8 3.5726 3.6600 -0.0002 7 6 5.6859 2.6096 0.0003 8 1 6.0493 2.0954 -0.8896 9 6 6.1959 1.8888 1.2498 10 7 6.1743 3.9909 0.0004 11 6 7.3962 4.2736 -0.4929 12 8 8.0918 3.3845 -0.9365 13 6 7.8984 5.6945 -0.4933 14 6 9.3013 5.7394 -1.1022 15 1 9.2821 5.2849 -2.0928 16 6 10.2568 4.9792 -0.2191 17 1 10.1223 4.9843 0.8524 18 6 11.3028 4.2769 -0.7791 19 7 11.5392 4.3670 -2.0697 20 14 12.3843 3.1972 0.2952 21 1 11.9128 3.2680 1.7016 22 1 12.3114 1.7929 -0.1818 23 1 13.7890 3.6732 0.2202 24 6 9.7540 7.1724 -1.2156 25 6 9.9258 7.9352 -0.0757 26 6 10.3453 9.2482 -0.1795 27 6 10.5841 9.8012 -1.4238 28 6 10.4073 9.0400 -2.5639 29 6 9.9921 7.7256 -2.4599 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8901 35 1 1.6767 1.9564 0.8900 36 1 1.6768 1.9563 -0.8900 37 1 3.9900 0.6024 0.0006 38 1 5.8325 0.8612 1.2501 39 1 5.8325 2.4029 2.1395 40 1 7.2859 1.8884 1.2495 41 1 5.6182 4.7018 0.3554 42 1 7.2258 6.3174 -1.0830 43 1 7.9349 6.0672 0.5304 44 1 12.2753 3.8732 -2.4636 45 1 9.7352 7.5044 0.8962 46 1 10.4837 9.8429 0.7113 47 1 10.9092 10.8279 -1.5049 48 1 10.5943 9.4718 -3.5360 49 1 9.8544 7.1307 -3.3507 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650217348.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:28 Heat of formation + Delta-G solvation = -88.486524 kcal Electronic energy + Delta-G solvation = -28181.031132 eV Core-core repulsion = 24299.310818 eV Total energy + Delta-G solvation = -3881.720314 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.40239 -40.33479 -39.60004 -36.92265 -36.15375 -35.51506 -33.77575 -33.38488 -31.74935 -31.48094 -30.02669 -27.45750 -27.39031 -25.29099 -24.17609 -23.12260 -22.59264 -21.78872 -21.16281 -20.90526 -18.77618 -18.39606 -17.79855 -17.41605 -16.99988 -16.78726 -16.52168 -16.25432 -15.92361 -15.63308 -15.58928 -15.34590 -14.85723 -14.55174 -14.32223 -13.96013 -13.95154 -13.80861 -13.58161 -13.53980 -13.33437 -13.25760 -13.13037 -12.93106 -12.85088 -12.65193 -12.48646 -12.39204 -12.03877 -11.81192 -11.75312 -11.67886 -11.29814 -11.00918 -10.93327 -10.66001 -10.34651 -10.20227 -10.00958 -9.52850 -9.17629 -8.01413 -6.03921 0.79310 0.85526 1.37845 1.40688 1.43804 1.48927 1.82305 1.98945 2.48662 2.51742 3.20465 3.38506 3.57616 3.91484 4.01423 4.06333 4.12653 4.23361 4.27057 4.35226 4.37066 4.42851 4.56463 4.62572 4.65074 4.67134 4.74130 4.75376 4.81077 4.86796 4.94339 5.00860 5.15887 5.19397 5.23945 5.24834 5.29327 5.39066 5.44688 5.52895 5.54135 5.66387 5.81242 5.85066 5.96625 6.19605 6.39792 6.43581 6.48469 6.71088 7.03550 7.07118 7.54651 7.59177 9.08596 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.013277 B = 0.002759 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.334498 B =10147.567063 C =11610.885183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.128 4.128 3 C 0.116 3.884 4 N -0.712 5.712 5 C 0.519 3.481 6 O -0.570 6.570 7 C 0.124 3.876 8 H 0.102 0.898 9 C -0.151 4.151 10 N -0.720 5.720 11 C 0.518 3.482 12 O -0.547 6.547 13 C -0.117 4.117 14 C 0.084 3.916 15 H 0.024 0.976 16 C -0.482 4.482 17 H 0.048 0.952 18 C 0.023 3.977 19 N -0.918 5.918 20 Si 0.937 3.063 21 H -0.265 1.265 22 H -0.290 1.290 23 H -0.285 1.285 24 C -0.047 4.047 25 C -0.128 4.128 26 C -0.127 4.127 27 C -0.148 4.148 28 C -0.129 4.129 29 C -0.143 4.143 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.063 0.937 36 H 0.056 0.944 37 H 0.417 0.583 38 H 0.099 0.901 39 H 0.068 0.932 40 H 0.051 0.949 41 H 0.410 0.590 42 H 0.086 0.914 43 H 0.096 0.904 44 H 0.253 0.747 45 H 0.116 0.884 46 H 0.141 0.859 47 H 0.143 0.857 48 H 0.131 0.869 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.154 -3.901 6.145 19.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.166 4.166 3 C -0.007 4.007 4 N -0.365 5.365 5 C 0.304 3.696 6 O -0.449 6.449 7 C 0.015 3.985 8 H 0.119 0.881 9 C -0.210 4.210 10 N -0.376 5.376 11 C 0.306 3.694 12 O -0.422 6.422 13 C -0.157 4.157 14 C 0.065 3.935 15 H 0.043 0.957 16 C -0.520 4.520 17 H 0.066 0.934 18 C -0.176 4.176 19 N -0.557 5.557 20 Si 0.765 3.235 21 H -0.189 1.189 22 H -0.216 1.216 23 H -0.212 1.212 24 C -0.048 4.048 25 C -0.146 4.146 26 C -0.145 4.145 27 C -0.166 4.166 28 C -0.147 4.147 29 C -0.162 4.162 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.254 0.746 38 H 0.118 0.882 39 H 0.087 0.913 40 H 0.070 0.930 41 H 0.247 0.753 42 H 0.104 0.896 43 H 0.114 0.886 44 H 0.062 0.938 45 H 0.134 0.866 46 H 0.158 0.842 47 H 0.161 0.839 48 H 0.149 0.851 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -17.984 -3.889 5.691 19.260 hybrid contribution 0.936 -0.913 0.177 1.319 sum -17.048 -4.803 5.869 18.659 Atomic orbital electron populations 1.21691 0.94084 1.02814 1.02242 1.21707 0.97279 0.93846 1.03782 1.21531 0.78391 0.99028 1.01768 1.45869 1.07997 1.08318 1.74314 1.20611 0.89551 0.84203 0.75219 1.90677 1.70518 1.32626 1.51095 1.20751 0.90105 0.85495 1.02106 0.88070 1.22085 1.01873 1.01321 0.95672 1.45832 1.17734 1.09008 1.65051 1.20947 0.80234 0.92107 0.76114 1.90732 1.56202 1.49270 1.45990 1.21686 0.98535 0.92081 1.03423 1.17613 0.90252 0.88650 0.96973 0.95718 1.20979 1.10529 1.28267 0.92202 0.93390 1.25496 0.98872 0.97532 0.95677 1.70067 1.30576 1.43063 1.12038 0.85829 0.78762 0.79082 0.79876 1.18887 1.21626 1.21165 1.20593 0.95381 0.95837 0.92939 1.21042 1.01207 0.94342 0.97969 1.21371 0.99629 0.95050 0.98409 1.21256 1.02496 1.00628 0.92202 1.21280 1.00075 0.93765 0.99542 1.21103 1.02302 0.95715 0.97065 0.92653 0.91116 0.92350 0.90520 0.90022 0.91910 0.92567 0.74584 0.88222 0.91328 0.92996 0.75275 0.89582 0.88583 0.93815 0.86613 0.84153 0.83890 0.85077 0.88842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 71.98 0.71 -0.49 16 2 C -0.13 -1.10 6.05 30.59 0.19 -0.92 16 3 C 0.12 1.70 5.68 86.38 0.49 2.19 16 4 N -0.71 -11.72 5.45 -463.06 -2.52 -14.25 16 5 C 0.52 12.72 7.22 87.66 0.63 13.35 16 6 O -0.57 -17.81 15.84 -3.04 -0.05 -17.86 16 7 C 0.12 3.36 2.98 44.24 0.13 3.50 16 8 H 0.10 2.99 7.58 -2.38 -0.02 2.97 16 9 C -0.15 -3.46 9.38 71.98 0.68 -2.78 16 10 N -0.72 -23.22 4.95 -446.08 -2.21 -25.43 16 11 C 0.52 21.39 7.54 87.66 0.66 22.05 16 12 O -0.55 -27.73 14.65 -3.05 -0.04 -27.77 16 13 C -0.12 -4.73 4.95 29.85 0.15 -4.58 16 14 C 0.08 4.22 1.67 -12.29 -0.02 4.20 16 15 H 0.02 1.45 6.98 -2.39 -0.02 1.43 16 16 C -0.48 -26.52 6.37 25.60 0.16 -26.36 16 17 H 0.05 2.60 7.82 -2.91 -0.02 2.58 16 18 C 0.02 1.32 5.45 84.66 0.46 1.78 16 19 N -0.92 -56.47 12.87 21.45 0.28 -56.20 16 20 Si 0.94 46.48 29.54 68.60 2.03 48.51 16 21 H -0.26 -12.51 7.11 99.48 0.71 -11.80 16 22 H -0.29 -14.47 7.11 99.48 0.71 -13.77 16 23 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 24 C -0.05 -2.15 4.77 -19.86 -0.09 -2.24 16 25 C -0.13 -5.09 8.86 22.27 0.20 -4.90 16 26 C -0.13 -4.23 10.05 22.27 0.22 -4.01 16 27 C -0.15 -4.73 10.05 22.27 0.22 -4.51 16 28 C -0.13 -4.64 10.05 22.27 0.22 -4.42 16 29 C -0.14 -6.32 9.67 22.27 0.22 -6.10 16 30 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16 35 H 0.06 1.01 8.14 -2.39 -0.02 1.00 16 36 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.42 4.51 7.89 -92.71 -0.73 3.77 16 38 H 0.10 1.51 7.56 -2.39 -0.02 1.49 16 39 H 0.07 1.46 8.14 -2.39 -0.02 1.45 16 40 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.41 11.99 7.79 -92.71 -0.72 11.27 16 42 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 43 H 0.10 3.49 7.77 -2.39 -0.02 3.47 16 44 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 45 H 0.12 4.45 7.76 -2.91 -0.02 4.42 16 46 H 0.14 3.68 8.06 -2.91 -0.02 3.66 16 47 H 0.14 3.48 8.06 -2.91 -0.02 3.45 16 48 H 0.13 3.95 8.06 -2.91 -0.02 3.93 16 49 H 0.09 4.35 7.95 -2.91 -0.02 4.32 16 Total: -1.00 -76.72 408.27 2.20 -74.51 By element: Atomic # 1 Polarization: 33.22 SS G_CDS: -0.51 Total: 32.71 kcal Atomic # 6 Polarization: -19.46 SS G_CDS: 5.23 Total: -14.23 kcal Atomic # 7 Polarization: -91.41 SS G_CDS: -4.46 Total: -95.87 kcal Atomic # 8 Polarization: -45.54 SS G_CDS: -0.09 Total: -45.64 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Total: -76.72 2.20 -74.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650217348.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.972 kcal (2) G-P(sol) polarization free energy of solvation -76.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds