Wall clock time and date at job start Tue Mar 31 2020 16:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35906 * 116.99956 * 2 1 4 4 C 1.38752 * 120.05554 * 359.97438 * 3 2 1 5 5 C 1.38120 * 119.94400 * 180.02562 * 4 3 2 6 6 C 1.38285 * 120.05584 * 359.73002 * 5 4 3 7 7 C 1.38242 * 120.11001 * 0.54943 * 6 5 4 8 8 C 1.38161 * 120.05647 * 359.45042 * 7 6 5 9 9 C 1.50700 * 120.03018 * 180.29815 * 8 7 6 10 10 C 1.50696 * 109.47168 * 264.99866 * 9 8 7 11 11 O 1.21284 * 119.99991 * 359.97438 * 10 9 8 12 12 N 1.34781 * 120.00136 * 179.97438 * 10 9 8 13 13 C 1.46501 * 119.99916 * 174.98971 * 12 10 9 14 14 C 1.53003 * 109.47227 * 304.29385 * 13 12 10 15 15 C 1.52999 * 109.47112 * 64.29269 * 13 12 10 16 16 N 1.46506 * 109.46928 * 60.00291 * 15 13 12 17 17 C 1.36938 * 119.99838 * 179.97438 * 16 15 13 18 18 H 1.08001 * 120.00175 * 359.97438 * 17 16 15 19 19 C 1.38806 * 119.99839 * 179.97438 * 17 16 15 20 20 N 1.31622 * 120.00138 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 120.00243 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.46772 * 89.99949 * 21 19 17 23 23 H 1.48495 * 109.47334 * 210.00001 * 21 19 17 24 24 H 1.48500 * 109.47026 * 330.00324 * 21 19 17 25 25 C 1.52995 * 109.46858 * 184.29369 * 13 12 10 26 26 C 1.53007 * 117.49877 * 132.69270 * 25 13 12 27 27 C 1.53004 * 117.50046 * 64.07064 * 25 13 12 28 28 H 1.09005 * 109.46778 * 299.99685 * 1 2 3 29 29 H 1.08990 * 109.47392 * 59.99961 * 1 2 3 30 30 H 1.08996 * 109.46747 * 180.02562 * 1 2 3 31 31 H 1.07999 * 120.02705 * 0.02562 * 4 3 2 32 32 H 1.08007 * 119.96923 * 179.97438 * 5 4 3 33 33 H 1.08000 * 119.94339 * 180.29322 * 6 5 4 34 34 H 1.08003 * 119.97062 * 179.72562 * 7 6 5 35 35 H 1.09005 * 109.47112 * 24.99463 * 9 8 7 36 36 H 1.09001 * 109.47151 * 144.99544 * 9 8 7 37 37 H 0.96995 * 119.99702 * 354.98657 * 12 10 9 38 38 H 1.09003 * 109.46801 * 60.00062 * 14 13 12 39 39 H 1.08997 * 109.47189 * 180.02562 * 14 13 12 40 40 H 1.09005 * 109.46682 * 300.00275 * 14 13 12 41 41 H 1.08997 * 109.47025 * 179.97438 * 15 13 12 42 42 H 1.08990 * 109.47427 * 299.99979 * 15 13 12 43 43 H 0.96996 * 119.99659 * 359.97438 * 16 15 13 44 44 H 0.97000 * 120.00686 * 179.97438 * 20 19 17 45 45 H 1.09004 * 115.55413 * 278.39868 * 25 13 12 46 46 H 1.09002 * 117.49420 * 359.97438 * 26 25 13 47 47 H 1.08999 * 117.49865 * 145.01883 * 26 25 13 48 48 H 1.08994 * 117.50217 * 214.97966 * 27 25 13 49 49 H 1.09004 * 117.49816 * 359.97438 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9208 3.6048 -0.0011 6 6 3.3018 3.6758 0.0046 7 6 4.0559 2.5172 -0.0007 8 6 3.4311 1.2849 -0.0002 9 6 4.2537 0.0222 0.0009 10 6 4.4246 -0.4671 -1.4142 11 8 3.9270 0.1486 -2.3330 12 7 5.1304 -1.5890 -1.6587 13 6 5.2049 -2.1255 -3.0199 14 6 3.7903 -2.3598 -3.5538 15 6 5.9318 -1.1267 -3.9226 16 7 7.2863 -0.9024 -3.4114 17 6 8.1295 -0.0410 -4.0613 18 1 7.7961 0.4726 -4.9509 19 6 9.4126 0.1719 -3.5766 20 7 10.2232 0.9995 -4.2015 21 14 9.9890 -0.7159 -2.0375 22 1 10.6144 -2.0084 -2.4165 23 1 10.9837 0.1249 -1.3241 24 1 8.8272 -0.9702 -1.1483 25 6 5.9703 -3.4501 -3.0047 26 6 5.3556 -4.6299 -3.7606 27 6 5.3506 -4.6153 -2.2306 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 0.2128 2.3204 -0.0005 32 1 1.3338 4.5114 -0.0019 33 1 3.7921 4.6381 0.0089 34 1 5.1344 2.5753 -0.0008 35 1 5.2324 0.2265 0.4353 36 1 3.7466 -0.7413 0.5907 37 1 5.5891 -2.0411 -0.9334 38 1 3.2451 -1.4160 -3.5646 39 1 3.8458 -2.7594 -4.5664 40 1 3.2725 -3.0714 -2.9106 41 1 5.9876 -1.5261 -4.9353 42 1 5.3866 -0.1830 -3.9334 43 1 7.5858 -1.3640 -2.6126 44 1 11.1198 1.1486 -3.8627 45 1 7.0570 -3.3653 -3.0016 46 1 4.4057 -4.4623 -4.2683 47 1 6.0379 -5.3213 -4.2551 48 1 6.0295 -5.2972 -1.7186 49 1 4.3977 -4.4380 -1.7318 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666037137.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:51 Heat of formation + Delta-G solvation = -0.402519 kcal Electronic energy + Delta-G solvation = -29763.968768 eV Core-core repulsion = 25886.068064 eV Total energy + Delta-G solvation = -3877.900705 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.51548 -39.80268 -37.87002 -37.25670 -34.77564 -33.42323 -32.91351 -31.27131 -30.15056 -29.97578 -27.85606 -26.98775 -26.03205 -23.70558 -22.31343 -22.14661 -21.86499 -21.78820 -19.97092 -18.86383 -18.03965 -17.61910 -17.09789 -16.36572 -16.00298 -15.72358 -15.50843 -15.03901 -14.75172 -14.56053 -14.42464 -14.08603 -13.73046 -13.62229 -13.10498 -13.06221 -12.78309 -12.49485 -12.40182 -12.19737 -12.13267 -12.09331 -11.89509 -11.63225 -11.29245 -11.18387 -11.08095 -10.92259 -10.86776 -10.83658 -10.68810 -10.26052 -10.19179 -9.87868 -9.51920 -9.31143 -8.83840 -8.72494 -8.55797 -8.12792 -7.09538 -5.68679 -3.01808 1.32633 1.48195 3.10975 3.20782 3.35372 3.36884 3.38980 3.46099 3.81854 4.09712 4.63818 4.65412 4.72598 4.77056 4.89506 4.98226 5.01170 5.04809 5.09946 5.15369 5.23679 5.29322 5.33988 5.34820 5.39496 5.50424 5.60137 5.62549 5.65103 5.75134 5.76685 5.90994 5.97384 6.02724 6.04300 6.17916 6.21096 6.29791 6.39046 6.43690 6.54961 6.57813 6.63056 6.79237 6.92376 7.12584 7.34534 7.94274 8.10072 8.50451 8.69926 9.30613 10.02703 10.24329 11.50507 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.010352 B = 0.004401 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2704.040952 B = 6360.370490 C = 8192.892960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.313 6.313 3 C 0.141 3.859 4 C -0.211 4.211 5 C -0.084 4.084 6 C -0.155 4.155 7 C -0.066 4.066 8 C -0.090 4.090 9 C -0.096 4.096 10 C 0.525 3.475 11 O -0.523 6.523 12 N -0.718 5.718 13 C 0.200 3.800 14 C -0.162 4.162 15 C 0.150 3.850 16 N -0.750 5.750 17 C -0.232 4.232 18 H 0.089 0.911 19 C 0.001 3.999 20 N -0.937 5.937 21 Si 0.882 3.118 22 H -0.286 1.286 23 H -0.292 1.292 24 H -0.279 1.279 25 C -0.154 4.154 26 C -0.170 4.170 27 C -0.182 4.182 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.097 0.903 31 H 0.124 0.876 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.130 0.870 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.395 0.605 38 H 0.081 0.919 39 H 0.065 0.935 40 H 0.051 0.949 41 H 0.030 0.970 42 H 0.052 0.948 43 H 0.358 0.642 44 H 0.257 0.743 45 H 0.115 0.885 46 H 0.101 0.899 47 H 0.093 0.907 48 H 0.091 0.909 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.956 -5.623 12.112 24.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.227 6.227 3 C 0.095 3.905 4 C -0.230 4.230 5 C -0.102 4.102 6 C -0.173 4.173 7 C -0.084 4.084 8 C -0.091 4.091 9 C -0.136 4.136 10 C 0.311 3.689 11 O -0.398 6.398 12 N -0.369 5.369 13 C 0.115 3.885 14 C -0.220 4.220 15 C 0.022 3.978 16 N -0.395 5.395 17 C -0.362 4.362 18 H 0.106 0.894 19 C -0.194 4.194 20 N -0.587 5.587 21 Si 0.713 3.287 22 H -0.213 1.213 23 H -0.219 1.219 24 H -0.205 1.205 25 C -0.173 4.173 26 C -0.207 4.207 27 C -0.219 4.219 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.115 0.885 31 H 0.142 0.858 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.148 0.852 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.228 0.772 38 H 0.100 0.900 39 H 0.083 0.917 40 H 0.070 0.930 41 H 0.048 0.952 42 H 0.070 0.930 43 H 0.190 0.810 44 H 0.068 0.932 45 H 0.133 0.867 46 H 0.119 0.881 47 H 0.112 0.888 48 H 0.110 0.890 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -20.181 -5.212 11.263 23.691 hybrid contribution 0.691 -0.627 1.401 1.684 sum -19.490 -5.839 12.664 23.965 Atomic orbital electron populations 1.23005 0.78780 1.03661 1.01138 1.86057 1.21002 1.26994 1.88616 1.18728 0.91588 0.84113 0.96023 1.21117 0.99650 0.92420 1.09806 1.20883 0.94701 0.96778 0.97859 1.21015 0.93847 0.98399 1.04033 1.20950 1.00223 0.91023 0.96206 1.18615 0.90083 0.94696 1.05737 1.20501 1.01148 0.96182 0.95766 1.20221 0.78016 0.79973 0.90657 1.90646 1.48278 1.55294 1.45628 1.45950 1.53126 1.27681 1.10147 1.20038 0.94703 0.91435 0.82366 1.22251 0.96002 1.03177 1.00558 1.21036 0.85837 0.96706 0.94211 1.42592 1.11116 1.54055 1.31746 1.19090 0.92826 1.16740 1.07532 0.89355 1.24634 0.96520 0.99643 0.98635 1.69700 1.07734 1.39810 1.41407 0.86573 0.78121 0.79519 0.84481 1.21274 1.21866 1.20550 1.22552 1.00239 0.88847 1.05674 1.23054 1.02976 1.00455 0.94225 1.22947 1.02671 1.01664 0.94633 0.92927 0.92705 0.88501 0.85796 0.86077 0.85869 0.85191 0.88260 0.88156 0.77200 0.90044 0.91661 0.92996 0.95207 0.92984 0.80958 0.93245 0.86710 0.88088 0.88828 0.89027 0.88835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.24 16 2 O -0.31 -3.94 9.63 -19.45 -0.19 -4.13 16 3 C 0.14 1.92 6.66 -39.22 -0.26 1.65 16 4 C -0.21 -2.51 9.04 -39.43 -0.36 -2.87 16 5 C -0.08 -0.97 10.04 -39.61 -0.40 -1.37 16 6 C -0.15 -1.94 10.04 -39.56 -0.40 -2.33 16 7 C -0.07 -0.93 9.68 -39.61 -0.38 -1.31 16 8 C -0.09 -1.30 4.39 -104.48 -0.46 -1.76 16 9 C -0.10 -1.29 5.56 -29.04 -0.16 -1.46 16 10 C 0.53 8.74 7.23 -10.99 -0.08 8.66 16 11 O -0.52 -10.55 12.27 5.55 0.07 -10.48 16 12 N -0.72 -11.00 4.73 -47.61 -0.23 -11.22 16 13 C 0.20 3.25 0.54 -131.82 -0.07 3.18 16 14 C -0.16 -2.37 6.98 37.16 0.26 -2.11 16 15 C 0.15 3.18 5.03 -4.04 -0.02 3.16 16 16 N -0.75 -18.29 4.84 -59.91 -0.29 -18.58 16 17 C -0.23 -6.80 10.47 -15.06 -0.16 -6.95 16 18 H 0.09 2.82 8.06 -52.49 -0.42 2.40 16 19 C 0.00 0.02 5.50 -17.43 -0.10 -0.08 16 20 N -0.94 -30.15 13.97 55.49 0.78 -29.38 16 21 Si 0.88 22.28 27.74 -169.99 -4.71 17.57 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 24 H -0.28 -6.51 6.52 56.52 0.37 -6.14 16 25 C -0.15 -2.24 4.84 -90.62 -0.44 -2.68 16 26 C -0.17 -2.04 9.63 -26.73 -0.26 -2.30 16 27 C -0.18 -2.05 9.82 -26.73 -0.26 -2.31 16 28 H 0.05 0.35 7.66 -51.93 -0.40 -0.04 16 29 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 30 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.12 1.16 6.30 -52.49 -0.33 0.82 16 32 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 33 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 34 H 0.13 1.76 8.06 -52.48 -0.42 1.33 16 35 H 0.10 1.20 8.05 -51.93 -0.42 0.79 16 36 H 0.10 1.15 7.69 -51.93 -0.40 0.75 16 37 H 0.39 5.18 8.48 -40.82 -0.35 4.83 16 38 H 0.08 1.38 6.04 -51.93 -0.31 1.07 16 39 H 0.06 0.88 6.78 -51.93 -0.35 0.53 16 40 H 0.05 0.67 6.99 -51.93 -0.36 0.31 16 41 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.05 1.25 6.32 -51.93 -0.33 0.92 16 43 H 0.36 8.33 4.49 -40.82 -0.18 8.15 16 44 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 45 H 0.11 1.93 7.09 -51.93 -0.37 1.56 16 46 H 0.10 1.14 5.88 -51.93 -0.31 0.84 16 47 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 48 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 49 H 0.09 0.99 7.35 -51.93 -0.38 0.61 16 LS Contribution 389.05 15.07 5.86 5.86 Total: -1.00 -35.75 389.05 -8.69 -44.44 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: -7.44 Total: 15.56 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -2.55 Total: -9.63 kcal Atomic # 7 Polarization: -59.44 SS G_CDS: 0.26 Total: -59.18 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.12 Total: -14.61 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.71 Total: 17.57 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.75 -8.69 -44.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666037137.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.039 kcal (2) G-P(sol) polarization free energy of solvation -35.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds