Wall clock time and date at job start Tue Mar 31 2020 16:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35906 * 116.99956 * 2 1 4 4 C 1.38752 * 120.05554 * 359.97438 * 3 2 1 5 5 C 1.38120 * 119.94400 * 180.02562 * 4 3 2 6 6 C 1.38285 * 120.05584 * 359.73002 * 5 4 3 7 7 C 1.38242 * 120.11001 * 0.54943 * 6 5 4 8 8 C 1.38161 * 120.05647 * 359.45042 * 7 6 5 9 9 C 1.50700 * 120.03018 * 180.29815 * 8 7 6 10 10 C 1.50696 * 109.47168 * 264.99866 * 9 8 7 11 11 O 1.21284 * 119.99991 * 359.97438 * 10 9 8 12 12 N 1.34781 * 120.00136 * 179.97438 * 10 9 8 13 13 C 1.46501 * 119.99916 * 174.98971 * 12 10 9 14 14 C 1.53003 * 109.47227 * 304.29385 * 13 12 10 15 15 C 1.52999 * 109.47112 * 64.29269 * 13 12 10 16 16 N 1.46506 * 109.46928 * 60.00291 * 15 13 12 17 17 C 1.36938 * 119.99838 * 179.97438 * 16 15 13 18 18 H 1.08001 * 120.00175 * 359.97438 * 17 16 15 19 19 C 1.38806 * 119.99839 * 179.97438 * 17 16 15 20 20 N 1.31622 * 120.00138 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 120.00243 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.46772 * 89.99949 * 21 19 17 23 23 H 1.48495 * 109.47334 * 210.00001 * 21 19 17 24 24 H 1.48500 * 109.47026 * 330.00324 * 21 19 17 25 25 C 1.52995 * 109.46858 * 184.29369 * 13 12 10 26 26 C 1.53007 * 117.49877 * 132.69270 * 25 13 12 27 27 C 1.53004 * 117.50046 * 64.07064 * 25 13 12 28 28 H 1.09005 * 109.46778 * 299.99685 * 1 2 3 29 29 H 1.08990 * 109.47392 * 59.99961 * 1 2 3 30 30 H 1.08996 * 109.46747 * 180.02562 * 1 2 3 31 31 H 1.07999 * 120.02705 * 0.02562 * 4 3 2 32 32 H 1.08007 * 119.96923 * 179.97438 * 5 4 3 33 33 H 1.08000 * 119.94339 * 180.29322 * 6 5 4 34 34 H 1.08003 * 119.97062 * 179.72562 * 7 6 5 35 35 H 1.09005 * 109.47112 * 24.99463 * 9 8 7 36 36 H 1.09001 * 109.47151 * 144.99544 * 9 8 7 37 37 H 0.96995 * 119.99702 * 354.98657 * 12 10 9 38 38 H 1.09003 * 109.46801 * 60.00062 * 14 13 12 39 39 H 1.08997 * 109.47189 * 180.02562 * 14 13 12 40 40 H 1.09005 * 109.46682 * 300.00275 * 14 13 12 41 41 H 1.08997 * 109.47025 * 179.97438 * 15 13 12 42 42 H 1.08990 * 109.47427 * 299.99979 * 15 13 12 43 43 H 0.96996 * 119.99659 * 359.97438 * 16 15 13 44 44 H 0.97000 * 120.00686 * 179.97438 * 20 19 17 45 45 H 1.09004 * 115.55413 * 278.39868 * 25 13 12 46 46 H 1.09002 * 117.49420 * 359.97438 * 26 25 13 47 47 H 1.08999 * 117.49865 * 145.01883 * 26 25 13 48 48 H 1.08994 * 117.50217 * 214.97966 * 27 25 13 49 49 H 1.09004 * 117.49816 * 359.97438 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9208 3.6048 -0.0011 6 6 3.3018 3.6758 0.0046 7 6 4.0559 2.5172 -0.0007 8 6 3.4311 1.2849 -0.0002 9 6 4.2537 0.0222 0.0009 10 6 4.4246 -0.4671 -1.4142 11 8 3.9270 0.1486 -2.3330 12 7 5.1304 -1.5890 -1.6587 13 6 5.2049 -2.1255 -3.0199 14 6 3.7903 -2.3598 -3.5538 15 6 5.9318 -1.1267 -3.9226 16 7 7.2863 -0.9024 -3.4114 17 6 8.1295 -0.0410 -4.0613 18 1 7.7961 0.4726 -4.9509 19 6 9.4126 0.1719 -3.5766 20 7 10.2232 0.9995 -4.2015 21 14 9.9890 -0.7159 -2.0375 22 1 10.6144 -2.0084 -2.4165 23 1 10.9837 0.1249 -1.3241 24 1 8.8272 -0.9702 -1.1483 25 6 5.9703 -3.4501 -3.0047 26 6 5.3556 -4.6299 -3.7606 27 6 5.3506 -4.6153 -2.2306 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 0.2128 2.3204 -0.0005 32 1 1.3338 4.5114 -0.0019 33 1 3.7921 4.6381 0.0089 34 1 5.1344 2.5753 -0.0008 35 1 5.2324 0.2265 0.4353 36 1 3.7466 -0.7413 0.5907 37 1 5.5891 -2.0411 -0.9334 38 1 3.2451 -1.4160 -3.5646 39 1 3.8458 -2.7594 -4.5664 40 1 3.2725 -3.0714 -2.9106 41 1 5.9876 -1.5261 -4.9353 42 1 5.3866 -0.1830 -3.9334 43 1 7.5858 -1.3640 -2.6126 44 1 11.1198 1.1486 -3.8627 45 1 7.0570 -3.3653 -3.0016 46 1 4.4057 -4.4623 -4.2683 47 1 6.0379 -5.3213 -4.2551 48 1 6.0295 -5.2972 -1.7186 49 1 4.3977 -4.4380 -1.7318 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666037137.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:50 Heat of formation + Delta-G solvation = -24.343978 kcal Electronic energy + Delta-G solvation = -29765.006948 eV Core-core repulsion = 25886.068064 eV Total energy + Delta-G solvation = -3878.938884 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.61514 -40.89199 -39.01283 -38.19772 -36.51344 -34.95476 -34.00978 -33.25069 -31.47586 -31.01754 -28.72701 -27.90095 -27.73347 -25.09221 -23.88759 -23.17428 -23.05756 -22.83599 -21.12207 -20.31659 -19.67117 -18.92562 -18.26223 -17.28907 -17.11681 -16.70508 -16.61700 -16.49603 -16.32035 -15.88392 -15.47955 -15.34794 -15.06223 -14.82411 -14.59954 -14.39646 -14.07108 -13.89593 -13.85189 -13.47378 -13.32113 -13.26426 -12.95498 -12.84464 -12.82560 -12.35537 -12.26367 -12.19008 -12.04352 -11.98169 -11.97268 -11.83168 -11.73582 -11.25299 -11.09353 -10.95802 -10.53157 -9.91112 -9.78322 -9.26496 -9.06579 -8.03055 -5.35865 0.36100 0.52468 1.32071 1.38863 1.46222 1.84089 2.21688 2.40991 2.47000 2.85146 3.07257 3.27497 3.54765 3.70557 3.73832 3.85308 3.88962 4.06298 4.13385 4.14602 4.19210 4.28404 4.35649 4.39445 4.40753 4.46807 4.54989 4.64619 4.66148 4.73135 4.79342 4.82224 4.84393 4.88901 4.97116 5.03640 5.09926 5.10882 5.28257 5.33520 5.37437 5.42720 5.49635 5.61694 5.70144 5.75672 5.87670 6.19848 6.47823 6.74800 7.07028 7.46350 7.81332 8.06439 9.19345 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.010352 B = 0.004401 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2704.040952 B = 6360.370490 C = 8192.892960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.330 6.330 3 C 0.129 3.871 4 C -0.215 4.215 5 C -0.085 4.085 6 C -0.167 4.167 7 C -0.090 4.090 8 C -0.115 4.115 9 C -0.089 4.089 10 C 0.519 3.481 11 O -0.565 6.565 12 N -0.711 5.711 13 C 0.210 3.790 14 C -0.151 4.151 15 C 0.151 3.849 16 N -0.742 5.742 17 C -0.234 4.234 18 H 0.042 0.958 19 C -0.065 4.065 20 N -0.987 5.987 21 Si 0.959 3.041 22 H -0.274 1.274 23 H -0.295 1.295 24 H -0.247 1.247 25 C -0.182 4.182 26 C -0.165 4.165 27 C -0.151 4.151 28 H 0.070 0.930 29 H 0.054 0.946 30 H 0.117 0.883 31 H 0.150 0.850 32 H 0.151 0.849 33 H 0.138 0.862 34 H 0.124 0.876 35 H 0.110 0.890 36 H 0.123 0.877 37 H 0.408 0.592 38 H 0.054 0.946 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.020 0.980 42 H 0.019 0.981 43 H 0.367 0.633 44 H 0.258 0.742 45 H 0.092 0.908 46 H 0.109 0.891 47 H 0.101 0.899 48 H 0.109 0.891 49 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.669 -8.112 14.802 27.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.244 6.244 3 C 0.083 3.917 4 C -0.234 4.234 5 C -0.103 4.103 6 C -0.185 4.185 7 C -0.108 4.108 8 C -0.116 4.116 9 C -0.129 4.129 10 C 0.306 3.694 11 O -0.443 6.443 12 N -0.363 5.363 13 C 0.124 3.876 14 C -0.209 4.209 15 C 0.023 3.977 16 N -0.388 5.388 17 C -0.365 4.365 18 H 0.061 0.939 19 C -0.256 4.256 20 N -0.638 5.638 21 Si 0.785 3.215 22 H -0.200 1.200 23 H -0.221 1.221 24 H -0.171 1.171 25 C -0.201 4.201 26 C -0.203 4.203 27 C -0.188 4.188 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.135 0.865 31 H 0.167 0.833 32 H 0.168 0.832 33 H 0.155 0.845 34 H 0.142 0.858 35 H 0.129 0.871 36 H 0.141 0.859 37 H 0.244 0.756 38 H 0.073 0.927 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.038 0.962 42 H 0.037 0.963 43 H 0.201 0.799 44 H 0.067 0.933 45 H 0.110 0.890 46 H 0.127 0.873 47 H 0.119 0.881 48 H 0.127 0.873 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -21.930 -7.745 13.979 27.136 hybrid contribution 1.140 0.221 0.431 1.238 sum -20.790 -7.524 14.410 26.391 Atomic orbital electron populations 1.23294 0.76752 1.05365 1.01980 1.86019 1.23153 1.26663 1.88516 1.18916 0.91640 0.85094 0.96031 1.21481 1.01013 0.92031 1.08864 1.21268 0.94508 0.97955 0.96580 1.21290 0.94666 0.98580 1.03997 1.21098 1.00269 0.91942 0.97470 1.18820 0.91001 0.94966 1.06827 1.20506 1.02009 0.96556 0.93785 1.20843 0.77254 0.79701 0.91567 1.90634 1.49964 1.56519 1.47179 1.45935 1.52749 1.27467 1.10149 1.19807 0.95088 0.90862 0.81824 1.22150 0.94651 1.02481 1.01666 1.21056 0.84452 0.96839 0.95314 1.42423 1.11650 1.53046 1.31678 1.18991 0.93888 1.17052 1.06557 0.93941 1.25543 0.96395 1.00808 1.02863 1.69910 1.08207 1.41887 1.43762 0.85358 0.78310 0.78084 0.79771 1.19971 1.22142 1.17112 1.22312 0.98823 0.88872 1.10055 1.23183 1.03111 0.98639 0.95332 1.23039 1.02875 0.98704 0.94148 0.91161 0.92695 0.86495 0.83266 0.83171 0.84460 0.85848 0.87138 0.85898 0.75612 0.92701 0.90775 0.90376 0.96187 0.96343 0.79869 0.93336 0.88980 0.87286 0.88095 0.87312 0.87498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.41 16 2 O -0.33 -7.81 9.63 -92.50 -0.89 -8.70 16 3 C 0.13 3.39 6.66 22.51 0.15 3.54 16 4 C -0.22 -4.80 9.04 22.36 0.20 -4.60 16 5 C -0.09 -1.85 10.04 22.25 0.22 -1.62 16 6 C -0.17 -4.15 10.04 22.28 0.22 -3.93 16 7 C -0.09 -2.58 9.68 22.25 0.22 -2.36 16 8 C -0.12 -3.31 4.39 -19.77 -0.09 -3.39 16 9 C -0.09 -2.32 5.56 29.10 0.16 -2.16 16 10 C 0.52 17.11 7.23 87.66 0.63 17.75 16 11 O -0.56 -23.48 12.27 -3.04 -0.04 -23.51 16 12 N -0.71 -20.82 4.73 -422.92 -2.00 -22.82 16 13 C 0.21 6.65 0.54 3.60 0.00 6.65 16 14 C -0.15 -4.26 6.98 71.98 0.50 -3.76 16 15 C 0.15 6.62 5.03 86.38 0.43 7.06 16 16 N -0.74 -36.84 4.84 -343.46 -1.66 -38.50 16 17 C -0.23 -14.28 10.47 84.03 0.88 -13.40 16 18 H 0.04 2.92 8.06 -2.91 -0.02 2.89 16 19 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 20 N -0.99 -65.61 13.97 21.65 0.30 -65.31 16 21 Si 0.96 45.97 27.74 68.60 1.90 47.87 16 22 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 23 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 24 H -0.25 -10.39 6.52 99.48 0.65 -9.75 16 25 C -0.18 -4.87 4.84 -10.79 -0.05 -4.92 16 26 C -0.17 -3.46 9.63 30.60 0.29 -3.16 16 27 C -0.15 -2.76 9.82 30.60 0.30 -2.46 16 28 H 0.07 0.75 7.66 -2.38 -0.02 0.74 16 29 H 0.05 0.78 7.66 -2.39 -0.02 0.77 16 30 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.15 2.42 6.30 -2.91 -0.02 2.40 16 32 H 0.15 2.27 8.06 -2.91 -0.02 2.24 16 33 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 34 H 0.12 3.51 8.06 -2.91 -0.02 3.49 16 35 H 0.11 2.56 8.05 -2.38 -0.02 2.54 16 36 H 0.12 2.57 7.69 -2.39 -0.02 2.55 16 37 H 0.41 9.63 8.48 -92.71 -0.79 8.84 16 38 H 0.05 1.87 6.04 -2.39 -0.01 1.86 16 39 H 0.07 1.92 6.78 -2.39 -0.02 1.90 16 40 H 0.08 1.78 6.99 -2.38 -0.02 1.77 16 41 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.02 0.94 6.32 -2.39 -0.02 0.93 16 43 H 0.37 16.76 4.49 -92.71 -0.42 16.34 16 44 H 0.26 16.21 8.31 -92.71 -0.77 15.43 16 45 H 0.09 2.93 7.09 -2.38 -0.02 2.92 16 46 H 0.11 2.11 5.88 -2.39 -0.01 2.10 16 47 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 48 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 49 H 0.11 1.72 7.35 -2.38 -0.02 1.71 16 Total: -1.00 -82.15 389.05 2.99 -79.15 By element: Atomic # 1 Polarization: 44.99 SS G_CDS: -0.29 Total: 44.70 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: 5.66 Total: -12.89 kcal Atomic # 7 Polarization: -123.27 SS G_CDS: -3.36 Total: -126.63 kcal Atomic # 8 Polarization: -31.29 SS G_CDS: -0.93 Total: -32.22 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 1.90 Total: 47.87 kcal Total: -82.15 2.99 -79.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666037137.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.809 kcal (2) G-P(sol) polarization free energy of solvation -82.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds