Wall clock time and date at job start Tue Mar 31 2020 16:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47016 * 2 1 4 4 H 1.09001 * 109.47471 * 54.99473 * 3 2 1 5 5 O 1.42903 * 109.46477 * 294.99668 * 3 2 1 6 6 C 1.35901 * 116.99989 * 94.92173 * 5 3 2 7 7 C 1.38750 * 120.05383 * 2.82675 * 6 5 3 8 8 C 1.38125 * 119.94253 * 180.02562 * 7 6 5 9 9 C 1.38293 * 120.05790 * 359.97438 * 8 7 6 10 10 C 1.38246 * 120.10957 * 0.04548 * 9 8 7 11 11 C 1.38165 * 120.05340 * 359.67351 * 10 9 8 12 12 C 1.50700 * 120.02866 * 180.30206 * 11 10 9 13 13 C 1.50696 * 109.47420 * 175.00081 * 3 2 1 14 14 O 1.21279 * 120.00188 * 114.99303 * 13 3 2 15 15 N 1.34779 * 119.99695 * 294.99788 * 13 3 2 16 16 C 1.46502 * 119.99943 * 179.72380 * 15 13 3 17 17 C 1.52994 * 109.47391 * 180.27128 * 16 15 13 18 18 H 1.09003 * 112.96398 * 306.68350 * 17 16 15 19 19 C 1.53941 * 113.77194 * 174.99792 * 17 16 15 20 20 C 1.53942 * 86.29511 * 222.09341 * 19 17 16 21 21 N 1.47587 * 113.76675 * 78.50203 * 17 16 15 22 22 C 1.36930 * 134.49589 * 318.94845 * 21 17 16 23 23 H 1.07998 * 120.00037 * 356.32547 * 22 21 17 24 24 C 1.38810 * 119.99985 * 176.32695 * 22 21 17 25 25 N 1.31622 * 120.00061 * 6.90927 * 24 22 21 26 26 Si 1.86803 * 119.99852 * 186.90682 * 24 22 21 27 27 H 1.48495 * 109.47066 * 94.98285 * 26 24 22 28 28 H 1.48504 * 109.47041 * 214.98390 * 26 24 22 29 29 H 1.48499 * 109.47176 * 334.97950 * 26 24 22 30 30 H 1.09001 * 109.46608 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47207 * 300.00104 * 1 2 3 32 32 H 1.08997 * 109.47209 * 60.00996 * 1 2 3 33 33 H 1.08994 * 109.47651 * 239.99599 * 2 1 3 34 34 H 1.09005 * 109.47490 * 119.99001 * 2 1 3 35 35 H 1.07999 * 120.03150 * 0.02566 * 7 6 5 36 36 H 1.08005 * 119.97079 * 179.97438 * 8 7 6 37 37 H 1.07995 * 119.94355 * 180.02562 * 9 8 7 38 38 H 1.07990 * 119.96964 * 179.97438 * 10 9 8 39 39 H 1.08999 * 109.47213 * 270.28189 * 12 11 10 40 40 H 1.09004 * 109.47345 * 30.27544 * 12 11 10 41 41 H 1.08996 * 109.47377 * 150.27716 * 12 11 10 42 42 H 0.97000 * 119.99990 * 359.97438 * 15 13 3 43 43 H 1.08998 * 109.47181 * 300.27632 * 16 15 13 44 44 H 1.09004 * 109.47088 * 60.27321 * 16 15 13 45 45 H 1.08995 * 113.74201 * 336.44518 * 19 17 16 46 46 H 1.09004 * 113.73988 * 107.63936 * 19 17 16 47 47 H 1.09000 * 113.77306 * 137.90720 * 20 19 17 48 48 H 1.09001 * 113.77027 * 269.20051 * 20 19 17 49 49 H 0.96998 * 120.00027 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9817 0.8417 5 8 1.6619 2.0813 -1.2212 6 6 0.5142 2.8090 -1.2072 7 6 -0.2019 2.9547 -0.0277 8 6 -1.3683 3.6944 -0.0163 9 6 -1.8223 4.2899 -1.1790 10 6 -1.1109 4.1458 -2.3555 11 6 0.0595 3.4117 -2.3709 12 6 0.8382 3.2607 -3.6522 13 6 3.5418 1.4444 0.1238 14 8 4.2249 1.8611 -0.7876 15 7 4.1259 0.9830 1.2474 16 6 5.5862 0.9792 1.3654 17 6 5.9865 0.4035 2.7252 18 1 5.4955 0.9036 3.5600 19 6 7.5064 0.2402 2.9068 20 6 7.1822 -1.1174 3.5561 21 7 5.9217 -1.0696 2.7898 22 6 5.0446 -2.0129 2.3254 23 1 4.1377 -1.7071 1.8250 24 6 5.3211 -3.3622 2.4977 25 7 6.3535 -3.7350 3.2240 26 14 4.2277 -4.6491 1.6988 27 1 4.8143 -5.0580 0.3973 28 1 4.1249 -5.8330 2.5892 29 1 2.8749 -4.0792 1.4748 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5137 0.8901 35 1 0.1525 2.4903 0.8806 36 1 -1.9263 3.8078 0.9015 37 1 -2.7344 4.8681 -1.1678 38 1 -1.4677 4.6114 -3.2622 39 1 0.4877 2.3790 -4.1887 40 1 0.6923 4.1451 -4.2725 41 1 1.8978 3.1488 -3.4225 42 1 3.5795 0.6500 1.9764 43 1 6.0133 0.3666 0.5714 44 1 5.9604 1.9993 1.2784 45 1 8.0542 0.1581 1.9680 46 1 7.9465 0.9632 3.5937 47 1 7.8517 -1.9216 3.2507 48 1 7.0440 -1.0661 4.6361 49 1 6.5465 -4.6779 3.3447 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670696879.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:43 Heat of formation + Delta-G solvation = 2.958926 kcal Electronic energy + Delta-G solvation = -29096.864305 eV Core-core repulsion = 25219.109364 eV Total energy + Delta-G solvation = -3877.754941 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.87402 -39.35455 -38.07895 -37.31925 -34.37757 -33.71582 -32.60196 -32.20759 -30.36714 -28.75587 -27.93935 -27.02507 -26.47160 -23.41724 -23.24456 -22.46955 -21.71747 -21.46986 -20.07669 -19.12621 -18.40092 -17.52280 -16.58004 -16.01079 -15.95866 -15.78097 -15.33892 -15.22597 -14.69676 -14.48447 -14.20360 -13.94923 -13.78523 -13.60673 -13.35709 -13.25918 -13.00434 -12.73733 -12.41367 -12.33124 -12.13053 -11.94469 -11.85595 -11.53557 -11.44738 -11.29485 -11.18660 -11.09584 -11.03877 -10.77758 -10.59977 -10.55909 -10.04565 -9.79620 -9.66468 -9.36392 -8.97584 -8.79339 -8.68150 -8.19530 -6.95301 -5.81987 -3.13508 1.14505 1.28538 2.67029 2.78802 3.34351 3.39016 3.42197 3.56116 3.72167 4.37761 4.46074 4.61376 4.67379 4.68680 4.78864 4.93979 5.05296 5.08629 5.12156 5.25605 5.30718 5.35424 5.43392 5.52996 5.56605 5.58142 5.63499 5.65643 5.71576 5.86374 5.88051 5.96450 6.03591 6.11420 6.13341 6.19265 6.26739 6.31307 6.36189 6.37058 6.57458 6.61816 6.64980 6.79689 7.19494 7.26998 7.37695 7.53936 7.75796 7.93362 8.42347 8.98772 9.66369 10.54720 11.35076 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.015160 B = 0.003069 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.577584 B = 9122.228341 C =10031.233671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.141 4.141 3 C 0.066 3.934 4 H 0.100 0.900 5 O -0.278 6.278 6 C 0.135 3.865 7 C -0.209 4.209 8 C -0.085 4.085 9 C -0.160 4.160 10 C -0.085 4.085 11 C -0.117 4.117 12 C -0.108 4.108 13 C 0.512 3.488 14 O -0.528 6.528 15 N -0.709 5.709 16 C 0.125 3.875 17 C 0.126 3.874 18 H 0.050 0.950 19 C -0.155 4.155 20 C 0.158 3.842 21 N -0.602 5.602 22 C -0.221 4.221 23 H 0.078 0.922 24 C -0.005 4.005 25 N -0.918 5.918 26 Si 0.905 3.095 27 H -0.288 1.288 28 H -0.291 1.291 29 H -0.281 1.281 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.132 0.868 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.126 0.874 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.075 0.925 42 H 0.402 0.598 43 H 0.074 0.926 44 H 0.061 0.939 45 H 0.077 0.923 46 H 0.054 0.946 47 H 0.073 0.927 48 H 0.027 0.973 49 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.447 14.685 -5.414 20.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.179 4.179 3 C 0.006 3.994 4 H 0.117 0.883 5 O -0.190 6.190 6 C 0.090 3.910 7 C -0.228 4.228 8 C -0.104 4.104 9 C -0.178 4.178 10 C -0.103 4.103 11 C -0.118 4.118 12 C -0.164 4.164 13 C 0.296 3.704 14 O -0.404 6.404 15 N -0.360 5.360 16 C 0.001 3.999 17 C 0.018 3.982 18 H 0.067 0.933 19 C -0.194 4.194 20 C 0.033 3.967 21 N -0.329 5.329 22 C -0.348 4.348 23 H 0.096 0.904 24 C -0.202 4.202 25 N -0.564 5.564 26 Si 0.736 3.264 27 H -0.216 1.216 28 H -0.218 1.218 29 H -0.206 1.206 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.109 0.891 35 H 0.149 0.851 36 H 0.141 0.859 37 H 0.139 0.861 38 H 0.144 0.856 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.094 0.906 42 H 0.237 0.763 43 H 0.092 0.908 44 H 0.080 0.920 45 H 0.095 0.905 46 H 0.072 0.928 47 H 0.091 0.909 48 H 0.045 0.955 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -12.902 14.605 -6.288 20.477 hybrid contribution -1.053 -1.054 0.396 1.541 sum -13.954 13.551 -5.892 20.324 Atomic orbital electron populations 1.21906 0.94581 1.02550 1.02039 1.22018 0.97171 0.93744 1.04974 1.22413 0.93680 0.95363 0.87971 0.88290 1.86217 1.37471 1.61810 1.33461 1.18902 0.86271 0.92031 0.93824 1.21326 0.98425 1.05385 0.97626 1.20895 0.95291 0.95899 0.98273 1.21009 1.01079 1.02720 0.92974 1.20870 0.93492 0.97633 0.98265 1.19285 0.97210 1.01029 0.94242 1.20635 1.00635 1.01703 0.93467 1.20078 0.88865 0.78521 0.82956 1.90705 1.64748 1.46233 1.38667 1.45864 1.08829 1.63583 1.17770 1.21807 0.78339 1.00105 0.99695 1.22505 0.94807 0.87463 0.93376 0.93296 1.23758 0.94893 0.99688 1.01086 1.22214 0.87996 0.93024 0.93469 1.46112 1.26110 0.98567 1.62071 1.18908 1.00378 0.85410 1.30113 0.90439 1.24757 0.98449 0.96772 1.00202 1.69828 1.29581 1.15182 1.41853 0.86216 0.79617 0.81660 0.78934 1.21555 1.21763 1.20638 0.91837 0.92388 0.92255 0.89915 0.89097 0.85063 0.85930 0.86104 0.85572 0.91447 0.91862 0.90599 0.76319 0.90750 0.92047 0.90469 0.92751 0.90888 0.95548 0.93649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 8.48 37.16 0.32 -1.36 16 2 C -0.14 -1.82 5.61 -26.73 -0.15 -1.97 16 3 C 0.07 0.89 2.57 -27.88 -0.07 0.82 16 4 H 0.10 1.11 5.31 -51.93 -0.28 0.83 16 5 O -0.28 -4.13 8.24 -39.29 -0.32 -4.45 16 6 C 0.14 1.74 5.30 -39.22 -0.21 1.53 16 7 C -0.21 -2.27 7.26 -39.43 -0.29 -2.56 16 8 C -0.09 -0.80 10.04 -39.60 -0.40 -1.20 16 9 C -0.16 -1.44 10.04 -39.56 -0.40 -1.84 16 10 C -0.08 -0.82 9.70 -39.61 -0.38 -1.20 16 11 C -0.12 -1.38 5.89 -104.47 -0.62 -1.99 16 12 C -0.11 -1.17 9.79 36.01 0.35 -0.82 16 13 C 0.51 8.63 7.18 -10.99 -0.08 8.55 16 14 O -0.53 -10.91 16.51 -14.30 -0.24 -11.15 16 15 N -0.71 -11.44 5.46 -60.30 -0.33 -11.77 16 16 C 0.12 2.19 5.54 -4.04 -0.02 2.17 16 17 C 0.13 2.33 4.33 -66.87 -0.29 2.04 16 18 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 19 C -0.16 -2.76 7.86 -25.81 -0.20 -2.96 16 20 C 0.16 3.54 7.54 -2.97 -0.02 3.51 16 21 N -0.60 -14.19 3.57 -170.73 -0.61 -14.80 16 22 C -0.22 -5.72 10.50 -15.06 -0.16 -5.88 16 23 H 0.08 1.90 7.84 -52.49 -0.41 1.49 16 24 C 0.00 -0.14 5.50 -17.43 -0.10 -0.23 16 25 N -0.92 -26.45 11.41 55.49 0.63 -25.82 16 26 Si 0.91 21.57 29.56 -169.99 -5.02 16.55 16 27 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 28 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 29 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.54 6.91 -51.93 -0.36 0.19 16 32 H 0.06 0.68 6.35 -51.93 -0.33 0.35 16 33 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.09 1.18 7.77 -51.93 -0.40 0.78 16 35 H 0.13 1.26 4.64 -52.49 -0.24 1.02 16 36 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 37 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 38 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 41 H 0.08 0.97 7.53 -51.93 -0.39 0.58 16 42 H 0.40 5.93 8.18 -40.82 -0.33 5.60 16 43 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 44 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 45 H 0.08 1.36 8.10 -51.93 -0.42 0.94 16 46 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.07 1.83 7.16 -51.93 -0.37 1.46 16 48 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 394.67 15.07 5.95 5.95 Total: -1.00 -32.26 394.67 -10.40 -42.66 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -7.75 Total: 6.23 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: -2.71 Total: -3.39 kcal Atomic # 7 Polarization: -52.09 SS G_CDS: -0.31 Total: -52.39 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -0.56 Total: -15.60 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.26 -10.40 -42.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670696879.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.617 kcal (2) G-P(sol) polarization free energy of solvation -32.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds