Wall clock time and date at job start Tue Mar 31 2020 16:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47016 * 2 1 4 4 H 1.09001 * 109.47471 * 54.99473 * 3 2 1 5 5 O 1.42903 * 109.46477 * 294.99668 * 3 2 1 6 6 C 1.35901 * 116.99989 * 94.92173 * 5 3 2 7 7 C 1.38750 * 120.05383 * 2.82675 * 6 5 3 8 8 C 1.38125 * 119.94253 * 180.02562 * 7 6 5 9 9 C 1.38293 * 120.05790 * 359.97438 * 8 7 6 10 10 C 1.38246 * 120.10957 * 0.04548 * 9 8 7 11 11 C 1.38165 * 120.05340 * 359.67351 * 10 9 8 12 12 C 1.50700 * 120.02866 * 180.30206 * 11 10 9 13 13 C 1.50696 * 109.47420 * 175.00081 * 3 2 1 14 14 O 1.21279 * 120.00188 * 114.99303 * 13 3 2 15 15 N 1.34779 * 119.99695 * 294.99788 * 13 3 2 16 16 C 1.46502 * 119.99943 * 179.72380 * 15 13 3 17 17 C 1.52994 * 109.47391 * 180.27128 * 16 15 13 18 18 H 1.09003 * 112.96398 * 306.68350 * 17 16 15 19 19 C 1.53941 * 113.77194 * 174.99792 * 17 16 15 20 20 C 1.53942 * 86.29511 * 222.09341 * 19 17 16 21 21 N 1.47587 * 113.76675 * 78.50203 * 17 16 15 22 22 C 1.36930 * 134.49589 * 318.94845 * 21 17 16 23 23 H 1.07998 * 120.00037 * 356.32547 * 22 21 17 24 24 C 1.38810 * 119.99985 * 176.32695 * 22 21 17 25 25 N 1.31622 * 120.00061 * 6.90927 * 24 22 21 26 26 Si 1.86803 * 119.99852 * 186.90682 * 24 22 21 27 27 H 1.48495 * 109.47066 * 94.98285 * 26 24 22 28 28 H 1.48504 * 109.47041 * 214.98390 * 26 24 22 29 29 H 1.48499 * 109.47176 * 334.97950 * 26 24 22 30 30 H 1.09001 * 109.46608 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47207 * 300.00104 * 1 2 3 32 32 H 1.08997 * 109.47209 * 60.00996 * 1 2 3 33 33 H 1.08994 * 109.47651 * 239.99599 * 2 1 3 34 34 H 1.09005 * 109.47490 * 119.99001 * 2 1 3 35 35 H 1.07999 * 120.03150 * 0.02566 * 7 6 5 36 36 H 1.08005 * 119.97079 * 179.97438 * 8 7 6 37 37 H 1.07995 * 119.94355 * 180.02562 * 9 8 7 38 38 H 1.07990 * 119.96964 * 179.97438 * 10 9 8 39 39 H 1.08999 * 109.47213 * 270.28189 * 12 11 10 40 40 H 1.09004 * 109.47345 * 30.27544 * 12 11 10 41 41 H 1.08996 * 109.47377 * 150.27716 * 12 11 10 42 42 H 0.97000 * 119.99990 * 359.97438 * 15 13 3 43 43 H 1.08998 * 109.47181 * 300.27632 * 16 15 13 44 44 H 1.09004 * 109.47088 * 60.27321 * 16 15 13 45 45 H 1.08995 * 113.74201 * 336.44518 * 19 17 16 46 46 H 1.09004 * 113.73988 * 107.63936 * 19 17 16 47 47 H 1.09000 * 113.77306 * 137.90720 * 20 19 17 48 48 H 1.09001 * 113.77027 * 269.20051 * 20 19 17 49 49 H 0.96998 * 120.00027 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9817 0.8417 5 8 1.6619 2.0813 -1.2212 6 6 0.5142 2.8090 -1.2072 7 6 -0.2019 2.9547 -0.0277 8 6 -1.3683 3.6944 -0.0163 9 6 -1.8223 4.2899 -1.1790 10 6 -1.1109 4.1458 -2.3555 11 6 0.0595 3.4117 -2.3709 12 6 0.8382 3.2607 -3.6522 13 6 3.5418 1.4444 0.1238 14 8 4.2249 1.8611 -0.7876 15 7 4.1259 0.9830 1.2474 16 6 5.5862 0.9792 1.3654 17 6 5.9865 0.4035 2.7252 18 1 5.4955 0.9036 3.5600 19 6 7.5064 0.2402 2.9068 20 6 7.1822 -1.1174 3.5561 21 7 5.9217 -1.0696 2.7898 22 6 5.0446 -2.0129 2.3254 23 1 4.1377 -1.7071 1.8250 24 6 5.3211 -3.3622 2.4977 25 7 6.3535 -3.7350 3.2240 26 14 4.2277 -4.6491 1.6988 27 1 4.8143 -5.0580 0.3973 28 1 4.1249 -5.8330 2.5892 29 1 2.8749 -4.0792 1.4748 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5137 0.8901 35 1 0.1525 2.4903 0.8806 36 1 -1.9263 3.8078 0.9015 37 1 -2.7344 4.8681 -1.1678 38 1 -1.4677 4.6114 -3.2622 39 1 0.4877 2.3790 -4.1887 40 1 0.6923 4.1451 -4.2725 41 1 1.8978 3.1488 -3.4225 42 1 3.5795 0.6500 1.9764 43 1 6.0133 0.3666 0.5714 44 1 5.9604 1.9993 1.2784 45 1 8.0542 0.1581 1.9680 46 1 7.9465 0.9632 3.5937 47 1 7.8517 -1.9216 3.2507 48 1 7.0440 -1.0661 4.6361 49 1 6.5465 -4.6779 3.3447 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670696879.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:42 Heat of formation + Delta-G solvation = -15.512799 kcal Electronic energy + Delta-G solvation = -29097.665299 eV Core-core repulsion = 25219.109364 eV Total energy + Delta-G solvation = -3878.555935 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.88299 -40.59090 -39.58929 -38.35746 -35.74020 -34.79463 -34.16558 -33.41539 -31.18480 -30.11142 -29.74269 -28.06773 -27.46513 -25.28601 -24.15383 -23.88376 -22.65695 -22.50925 -21.34969 -20.73693 -19.31375 -18.96214 -18.17171 -17.16948 -17.11541 -16.88555 -16.71700 -16.34885 -15.97562 -15.79581 -15.61968 -15.27810 -14.87466 -14.78926 -14.68584 -14.44500 -14.02579 -13.66919 -13.58492 -13.33870 -13.27368 -13.18800 -13.01341 -12.98856 -12.83439 -12.69169 -12.59865 -12.32456 -12.28582 -12.13084 -11.96875 -11.82175 -11.51371 -11.48026 -11.35900 -10.82964 -10.72841 -10.11020 -9.72705 -9.04099 -8.88359 -7.86761 -5.16782 0.39703 0.50193 1.42074 1.42920 1.46469 1.52390 1.61941 2.45847 2.56302 2.83497 3.31527 3.37375 3.49814 3.58191 3.67563 3.87948 3.96327 3.99712 4.09525 4.13724 4.23477 4.33753 4.35318 4.43418 4.47012 4.60987 4.63124 4.69894 4.71839 4.76754 4.78208 4.86948 4.95920 4.98813 5.01342 5.07065 5.09546 5.23782 5.31392 5.34327 5.37214 5.43089 5.54740 5.62366 5.62589 5.76054 5.87928 5.98735 6.34375 6.50094 6.96178 7.10890 7.66912 8.61467 9.30795 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.015160 B = 0.003069 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.577584 B = 9122.228341 C =10031.233671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.138 4.138 3 C 0.074 3.926 4 H 0.128 0.872 5 O -0.303 6.303 6 C 0.106 3.894 7 C -0.214 4.214 8 C -0.087 4.087 9 C -0.157 4.157 10 C -0.086 4.086 11 C -0.139 4.139 12 C -0.104 4.104 13 C 0.509 3.491 14 O -0.572 6.572 15 N -0.702 5.702 16 C 0.133 3.867 17 C 0.135 3.865 18 H 0.076 0.924 19 C -0.132 4.132 20 C 0.149 3.851 21 N -0.629 5.629 22 C -0.210 4.210 23 H 0.089 0.911 24 C -0.069 4.069 25 N -0.954 5.954 26 Si 0.959 3.041 27 H -0.299 1.299 28 H -0.298 1.298 29 H -0.260 1.260 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.051 0.949 33 H 0.059 0.941 34 H 0.091 0.909 35 H 0.142 0.858 36 H 0.149 0.851 37 H 0.149 0.851 38 H 0.149 0.851 39 H 0.068 0.932 40 H 0.083 0.917 41 H 0.046 0.954 42 H 0.411 0.589 43 H 0.042 0.958 44 H 0.081 0.919 45 H 0.076 0.924 46 H 0.095 0.905 47 H 0.036 0.964 48 H 0.024 0.976 49 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.218 17.032 -4.873 24.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.176 4.176 3 C 0.014 3.986 4 H 0.145 0.855 5 O -0.216 6.216 6 C 0.061 3.939 7 C -0.232 4.232 8 C -0.105 4.105 9 C -0.175 4.175 10 C -0.104 4.104 11 C -0.140 4.140 12 C -0.161 4.161 13 C 0.295 3.705 14 O -0.451 6.451 15 N -0.354 5.354 16 C 0.008 3.992 17 C 0.029 3.971 18 H 0.093 0.907 19 C -0.170 4.170 20 C 0.024 3.976 21 N -0.355 5.355 22 C -0.338 4.338 23 H 0.106 0.894 24 C -0.262 4.262 25 N -0.604 5.604 26 Si 0.789 3.211 27 H -0.227 1.227 28 H -0.225 1.225 29 H -0.184 1.184 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.110 0.890 35 H 0.159 0.841 36 H 0.167 0.833 37 H 0.167 0.833 38 H 0.167 0.833 39 H 0.087 0.913 40 H 0.102 0.898 41 H 0.065 0.935 42 H 0.247 0.753 43 H 0.060 0.940 44 H 0.099 0.901 45 H 0.094 0.906 46 H 0.113 0.887 47 H 0.055 0.945 48 H 0.042 0.958 49 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -15.711 16.991 -5.735 23.841 hybrid contribution -0.223 -1.649 0.208 1.677 sum -15.934 15.342 -5.527 22.799 Atomic orbital electron populations 1.21853 0.92695 1.03056 1.02673 1.21990 0.98759 0.93022 1.03818 1.22355 0.91114 0.96124 0.88975 0.85505 1.86184 1.38897 1.62628 1.33922 1.19202 0.86337 0.93144 0.95210 1.21482 0.98835 1.05711 0.97165 1.21270 0.94734 0.94920 0.99584 1.21412 1.01633 1.01999 0.92427 1.21180 0.92630 0.96908 0.99709 1.19558 0.98319 1.01914 0.94170 1.20590 0.98797 1.02765 0.93938 1.20702 0.90331 0.77302 0.82159 1.90680 1.66084 1.48223 1.40113 1.45798 1.08382 1.63174 1.18010 1.21599 0.79213 1.00422 0.97972 1.22670 0.95536 0.84589 0.94337 0.90681 1.23561 0.94720 0.97466 1.01292 1.22181 0.87392 0.94617 0.93444 1.46465 1.26064 1.00815 1.62191 1.19319 1.00463 0.85968 1.28094 0.89365 1.25473 1.00130 0.98824 1.01765 1.70003 1.31645 1.14614 1.44139 0.85327 0.79172 0.79369 0.77213 1.22673 1.22546 1.18429 0.91369 0.90348 0.92968 0.92205 0.89048 0.84089 0.83293 0.83324 0.83316 0.91306 0.89837 0.93461 0.75271 0.93967 0.90096 0.90573 0.88694 0.94523 0.95819 0.94663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 8.48 71.98 0.61 -2.30 16 2 C -0.14 -3.45 5.61 30.59 0.17 -3.28 16 3 C 0.07 1.95 2.57 29.85 0.08 2.03 16 4 H 0.13 2.57 5.31 -2.39 -0.01 2.56 16 5 O -0.30 -9.08 8.24 -73.44 -0.60 -9.68 16 6 C 0.11 2.62 5.30 22.51 0.12 2.74 16 7 C -0.21 -4.13 7.26 22.37 0.16 -3.97 16 8 C -0.09 -1.33 10.04 22.26 0.22 -1.11 16 9 C -0.16 -2.27 10.04 22.28 0.22 -2.05 16 10 C -0.09 -1.46 9.70 22.25 0.22 -1.24 16 11 C -0.14 -3.14 5.89 -19.77 -0.12 -3.26 16 12 C -0.10 -2.27 9.79 71.24 0.70 -1.58 16 13 C 0.51 17.03 7.18 87.66 0.63 17.66 16 14 O -0.57 -24.13 16.51 15.97 0.26 -23.86 16 15 N -0.70 -21.82 5.46 -463.07 -2.53 -24.34 16 16 C 0.13 4.49 5.54 86.38 0.48 4.97 16 17 C 0.13 4.70 4.33 45.09 0.20 4.90 16 18 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 19 C -0.13 -4.42 7.86 31.25 0.25 -4.17 16 20 C 0.15 6.68 7.54 86.48 0.65 7.33 16 21 N -0.63 -29.38 3.57 -694.08 -2.48 -31.86 16 22 C -0.21 -10.87 10.50 84.03 0.88 -9.98 16 23 H 0.09 4.25 7.84 -2.91 -0.02 4.23 16 24 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16 25 N -0.95 -56.74 11.41 21.65 0.25 -56.49 16 26 Si 0.96 44.98 29.56 68.60 2.03 47.01 16 27 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 28 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 29 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 30 H 0.07 1.29 8.14 -2.39 -0.02 1.28 16 31 H 0.08 1.23 6.91 -2.39 -0.02 1.22 16 32 H 0.05 1.13 6.35 -2.39 -0.02 1.12 16 33 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.09 2.24 7.77 -2.38 -0.02 2.22 16 35 H 0.14 2.29 4.64 -2.91 -0.01 2.28 16 36 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 37 H 0.15 1.31 8.06 -2.91 -0.02 1.28 16 38 H 0.15 1.73 8.06 -2.92 -0.02 1.70 16 39 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.08 1.39 8.09 -2.38 -0.02 1.37 16 41 H 0.05 1.28 7.53 -2.39 -0.02 1.26 16 42 H 0.41 11.32 8.18 -92.71 -0.76 10.56 16 43 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.08 2.47 8.14 -2.38 -0.02 2.45 16 45 H 0.08 2.59 8.10 -2.39 -0.02 2.57 16 46 H 0.09 2.48 8.14 -2.38 -0.02 2.46 16 47 H 0.04 1.90 7.16 -2.39 -0.02 1.88 16 48 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 49 H 0.24 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -72.92 394.67 3.05 -69.86 By element: Atomic # 1 Polarization: 25.85 SS G_CDS: 0.19 Total: 26.04 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: 5.93 Total: 3.33 kcal Atomic # 7 Polarization: -107.94 SS G_CDS: -4.76 Total: -112.70 kcal Atomic # 8 Polarization: -33.21 SS G_CDS: -0.34 Total: -33.55 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -72.92 3.05 -69.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670696879.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.352 kcal (2) G-P(sol) polarization free energy of solvation -72.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds