Wall clock time and date at job start Tue Mar 31 2020 16:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47180 * 2 1 4 4 H 1.08998 * 109.47001 * 304.99711 * 3 2 1 5 5 O 1.42896 * 109.47024 * 65.00009 * 3 2 1 6 6 C 1.35909 * 116.99688 * 260.59695 * 5 3 2 7 7 C 1.38753 * 120.05483 * 5.67331 * 6 5 3 8 8 C 1.38124 * 119.94257 * 179.97438 * 7 6 5 9 9 C 1.38291 * 120.05597 * 0.02562 * 8 7 6 10 10 C 1.38245 * 120.10866 * 359.97438 * 9 8 7 11 11 C 1.38163 * 120.05970 * 359.68219 * 10 9 8 12 12 C 1.50697 * 120.03119 * 180.29242 * 11 10 9 13 13 C 1.50700 * 109.47117 * 184.99622 * 3 2 1 14 14 O 1.21279 * 120.00381 * 245.00000 * 13 3 2 15 15 N 1.34786 * 120.00076 * 65.00268 * 13 3 2 16 16 C 1.46498 * 120.00180 * 180.02562 * 15 13 3 17 17 C 1.53000 * 109.47055 * 180.02562 * 16 15 13 18 18 H 1.08995 * 113.04386 * 53.24034 * 17 16 15 19 19 C 1.53946 * 113.76858 * 185.00236 * 17 16 15 20 20 C 1.53937 * 86.40862 * 137.95938 * 19 17 16 21 21 N 1.47579 * 86.11952 * 336.33591 * 20 19 17 22 22 C 1.36933 * 134.49435 * 204.64187 * 21 20 19 23 23 H 1.08002 * 119.99884 * 180.02562 * 22 21 20 24 24 C 1.38811 * 120.00501 * 359.97438 * 22 21 20 25 25 N 1.31628 * 119.99474 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00636 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.46908 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.47006 * 119.99811 * 26 24 22 29 29 H 1.48503 * 109.47257 * 240.00009 * 26 24 22 30 30 H 1.09003 * 109.47010 * 60.00045 * 1 2 3 31 31 H 1.08996 * 109.47058 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47220 * 300.00354 * 1 2 3 33 33 H 1.09004 * 109.47584 * 240.00039 * 2 1 3 34 34 H 1.09003 * 109.47010 * 119.99955 * 2 1 3 35 35 H 1.07995 * 120.02790 * 359.96948 * 7 6 5 36 36 H 1.07999 * 119.96975 * 179.97438 * 8 7 6 37 37 H 1.07998 * 119.94532 * 179.97438 * 9 8 7 38 38 H 1.07998 * 119.96639 * 179.97438 * 10 9 8 39 39 H 1.08994 * 109.47823 * 270.32526 * 12 11 10 40 40 H 1.09002 * 109.46657 * 30.32249 * 12 11 10 41 41 H 1.09003 * 109.47088 * 150.31836 * 12 11 10 42 42 H 0.97003 * 119.99573 * 359.97438 * 15 13 3 43 43 H 1.08997 * 109.46947 * 59.99442 * 16 15 13 44 44 H 1.09000 * 109.46854 * 299.99825 * 16 15 13 45 45 H 1.09006 * 113.74492 * 23.55476 * 19 17 16 46 46 H 1.09000 * 113.73481 * 252.36017 * 19 17 16 47 47 H 1.08995 * 113.77218 * 90.64077 * 20 19 17 48 48 H 1.09008 * 113.77017 * 222.03769 * 20 19 17 49 49 H 0.96997 * 119.99868 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 8 1.6620 2.0814 1.2210 6 6 0.5663 2.8847 1.1835 7 6 -0.1988 2.9629 0.0287 8 6 -1.3121 3.7797 -0.0067 9 6 -1.6641 4.5195 1.1074 10 6 -0.9033 4.4432 2.2592 11 6 0.2071 3.6223 2.3020 12 6 1.0321 3.5346 3.5601 13 6 3.5419 1.4443 -0.1237 14 8 4.2250 1.8611 0.7876 15 7 4.1261 0.9828 -1.2473 16 6 5.5862 0.9840 -1.3674 17 6 5.9863 0.4139 -2.7297 18 1 5.4922 0.9134 -3.5630 19 6 7.5065 0.2560 -2.9140 20 6 7.1886 -1.1003 -3.5689 21 7 5.9289 -1.0626 -2.8009 22 6 5.0573 -2.0126 -2.3396 23 1 4.1791 -1.7161 -1.7853 24 6 5.3019 -3.3568 -2.5853 25 7 6.3714 -3.7180 -3.2622 26 14 4.1125 -4.6528 -1.9567 27 1 2.9981 -3.9916 -1.2313 28 1 3.5689 -5.4237 -3.1036 29 1 4.8254 -5.5733 -1.0349 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.0760 2.3858 -0.8418 36 1 -1.9077 3.8413 -0.9055 37 1 -2.5347 5.1579 1.0776 38 1 -1.1801 5.0223 3.1278 39 1 1.8141 4.2935 3.5355 40 1 0.3920 3.7005 4.4266 41 1 1.4869 2.5463 3.6282 42 1 3.5797 0.6491 -1.9761 43 1 6.0163 0.3705 -0.5758 44 1 5.9572 2.0050 -1.2780 45 1 8.0560 0.1726 -1.9762 46 1 7.9432 0.9826 -3.5991 47 1 7.0469 -1.0446 -4.6482 48 1 7.8627 -1.9024 -3.2679 49 1 6.5425 -4.6573 -3.4337 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670696880.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:46 Heat of formation + Delta-G solvation = 2.358540 kcal Electronic energy + Delta-G solvation = -29076.094911 eV Core-core repulsion = 25198.313934 eV Total energy + Delta-G solvation = -3877.780976 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.86073 -39.34736 -38.05808 -37.31200 -34.38818 -33.73773 -32.59523 -32.20277 -30.36575 -28.75023 -27.92737 -27.01479 -26.47127 -23.40726 -23.25494 -22.47203 -21.71695 -21.47032 -20.07554 -19.13094 -18.40410 -17.51465 -16.56194 -16.02362 -15.94648 -15.75020 -15.32927 -15.22947 -14.73513 -14.47090 -14.23403 -13.95846 -13.78881 -13.54287 -13.35310 -13.25851 -12.99442 -12.76982 -12.42664 -12.33833 -12.12489 -11.93064 -11.85500 -11.52146 -11.47649 -11.30326 -11.15922 -11.07290 -11.01169 -10.78529 -10.61687 -10.55987 -10.04316 -9.78341 -9.65434 -9.35310 -8.97695 -8.84741 -8.68007 -8.20437 -6.93976 -5.80875 -3.13481 1.14445 1.27814 2.67861 2.79827 3.34125 3.38430 3.42309 3.58609 3.68672 4.37511 4.48064 4.61746 4.66945 4.68474 4.78917 4.92797 5.04881 5.07888 5.11944 5.24877 5.30530 5.36271 5.43484 5.52271 5.55890 5.58174 5.65354 5.65829 5.71281 5.86645 5.87653 5.96118 6.03350 6.11042 6.13014 6.18996 6.26687 6.31114 6.36541 6.36842 6.57635 6.61849 6.65160 6.79935 7.20061 7.27095 7.36448 7.55245 7.76005 7.93739 8.42605 8.99446 9.66444 10.54770 11.35883 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.015147 B = 0.003063 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.145493 B = 9138.958978 C =10091.538804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.140 4.140 3 C 0.066 3.934 4 H 0.100 0.900 5 O -0.278 6.278 6 C 0.134 3.866 7 C -0.210 4.210 8 C -0.086 4.086 9 C -0.159 4.159 10 C -0.085 4.085 11 C -0.116 4.116 12 C -0.106 4.106 13 C 0.510 3.490 14 O -0.528 6.528 15 N -0.709 5.709 16 C 0.125 3.875 17 C 0.125 3.875 18 H 0.051 0.949 19 C -0.155 4.155 20 C 0.159 3.841 21 N -0.603 5.603 22 C -0.219 4.219 23 H 0.079 0.921 24 C -0.007 4.007 25 N -0.919 5.919 26 Si 0.906 3.094 27 H -0.280 1.280 28 H -0.291 1.291 29 H -0.290 1.290 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.133 0.867 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.126 0.874 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.073 0.927 42 H 0.402 0.598 43 H 0.074 0.926 44 H 0.061 0.939 45 H 0.077 0.923 46 H 0.054 0.946 47 H 0.027 0.973 48 H 0.074 0.926 49 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.337 15.022 5.430 20.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.178 4.178 3 C 0.006 3.994 4 H 0.117 0.883 5 O -0.190 6.190 6 C 0.088 3.912 7 C -0.228 4.228 8 C -0.104 4.104 9 C -0.177 4.177 10 C -0.103 4.103 11 C -0.117 4.117 12 C -0.163 4.163 13 C 0.294 3.706 14 O -0.403 6.403 15 N -0.361 5.361 16 C 0.001 3.999 17 C 0.017 3.983 18 H 0.068 0.932 19 C -0.194 4.194 20 C 0.034 3.966 21 N -0.329 5.329 22 C -0.346 4.346 23 H 0.096 0.904 24 C -0.204 4.204 25 N -0.566 5.566 26 Si 0.737 3.263 27 H -0.205 1.205 28 H -0.218 1.218 29 H -0.217 1.217 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.109 0.891 34 H 0.101 0.899 35 H 0.151 0.849 36 H 0.141 0.859 37 H 0.139 0.861 38 H 0.144 0.856 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.092 0.908 42 H 0.237 0.763 43 H 0.092 0.908 44 H 0.080 0.920 45 H 0.095 0.905 46 H 0.072 0.928 47 H 0.044 0.956 48 H 0.092 0.908 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -12.804 14.930 6.313 20.656 hybrid contribution -1.089 -1.059 -0.496 1.598 sum -13.892 13.871 5.817 20.475 Atomic orbital electron populations 1.21913 0.94598 1.02576 1.02004 1.22000 0.97148 0.93664 1.04984 1.22420 0.93579 0.95459 0.87900 0.88274 1.86210 1.42105 1.58094 1.32549 1.18925 0.87184 0.90956 0.94137 1.21384 0.98501 1.04570 0.98355 1.20900 0.95890 0.95309 0.98329 1.21012 1.01082 1.01935 0.93685 1.20872 0.93852 0.97321 0.98273 1.19301 0.98372 0.98759 0.95225 1.20617 0.98821 1.03485 0.93358 1.20154 0.88989 0.78502 0.82952 1.90705 1.64752 1.46222 1.38671 1.45874 1.08824 1.63576 1.17820 1.21794 0.78389 1.00125 0.99618 1.22574 0.94845 0.87485 0.93358 0.93207 1.23765 0.94871 0.99704 1.01079 1.22196 0.88010 0.92985 0.93434 1.46165 1.26156 0.98484 1.62138 1.18962 1.02325 0.85471 1.27883 0.90359 1.24762 0.98166 0.96836 1.00606 1.69828 1.27044 1.15527 1.44178 0.86145 0.80144 0.82083 0.77968 1.20478 1.21795 1.21710 0.92406 0.91801 0.92204 0.89082 0.89901 0.84947 0.85925 0.86096 0.85563 0.91286 0.91905 0.90843 0.76309 0.90776 0.92038 0.90474 0.92791 0.95557 0.90803 0.93710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 8.48 37.16 0.32 -1.34 16 2 C -0.14 -1.80 5.61 -26.73 -0.15 -1.95 16 3 C 0.07 0.90 2.53 -27.88 -0.07 0.83 16 4 H 0.10 1.11 5.43 -51.93 -0.28 0.83 16 5 O -0.28 -4.12 8.16 -39.31 -0.32 -4.44 16 6 C 0.13 1.72 5.63 -39.22 -0.22 1.50 16 7 C -0.21 -2.28 7.36 -39.43 -0.29 -2.57 16 8 C -0.09 -0.81 10.04 -39.60 -0.40 -1.21 16 9 C -0.16 -1.44 10.04 -39.56 -0.40 -1.83 16 10 C -0.09 -0.83 9.70 -39.61 -0.38 -1.21 16 11 C -0.12 -1.37 5.89 -104.48 -0.62 -1.99 16 12 C -0.11 -1.16 9.79 36.00 0.35 -0.81 16 13 C 0.51 8.60 7.18 -10.98 -0.08 8.52 16 14 O -0.53 -10.91 16.51 -14.30 -0.24 -11.15 16 15 N -0.71 -11.46 5.46 -60.29 -0.33 -11.79 16 16 C 0.12 2.19 5.55 -4.04 -0.02 2.17 16 17 C 0.12 2.31 4.35 -66.66 -0.29 2.02 16 18 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 19 C -0.16 -2.76 7.85 -25.81 -0.20 -2.96 16 20 C 0.16 3.56 7.51 -2.97 -0.02 3.54 16 21 N -0.60 -14.22 3.59 -170.47 -0.61 -14.83 16 22 C -0.22 -5.68 10.52 -15.06 -0.16 -5.84 16 23 H 0.08 1.93 7.83 -52.49 -0.41 1.52 16 24 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 25 N -0.92 -26.50 11.39 55.49 0.63 -25.87 16 26 Si 0.91 21.53 29.55 -169.99 -5.02 16.50 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 28 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 29 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 30 H 0.06 0.53 6.73 -51.93 -0.35 0.18 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.68 6.53 -51.93 -0.34 0.34 16 33 H 0.09 1.17 7.77 -51.93 -0.40 0.77 16 34 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.13 1.27 4.27 -52.49 -0.22 1.05 16 36 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 38 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 41 H 0.07 0.91 7.53 -51.93 -0.39 0.52 16 42 H 0.40 5.94 8.18 -40.82 -0.33 5.61 16 43 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 44 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.08 1.36 8.10 -51.93 -0.42 0.94 16 46 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 48 H 0.07 1.85 7.16 -51.92 -0.37 1.48 16 49 H 0.25 7.11 8.31 -40.82 -0.34 6.78 16 LS Contribution 394.74 15.07 5.95 5.95 Total: -1.00 -32.32 394.74 -10.40 -42.72 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -7.73 Total: 6.32 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: -2.73 Total: -3.41 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: -0.31 Total: -52.49 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -0.56 Total: -15.59 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.32 -10.40 -42.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670696880.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.083 kcal (2) G-P(sol) polarization free energy of solvation -32.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds