Wall clock time and date at job start Tue Mar 31 2020 16:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47180 * 2 1 4 4 H 1.08998 * 109.47001 * 304.99711 * 3 2 1 5 5 O 1.42896 * 109.47024 * 65.00009 * 3 2 1 6 6 C 1.35909 * 116.99688 * 260.59695 * 5 3 2 7 7 C 1.38753 * 120.05483 * 5.67331 * 6 5 3 8 8 C 1.38124 * 119.94257 * 179.97438 * 7 6 5 9 9 C 1.38291 * 120.05597 * 0.02562 * 8 7 6 10 10 C 1.38245 * 120.10866 * 359.97438 * 9 8 7 11 11 C 1.38163 * 120.05970 * 359.68219 * 10 9 8 12 12 C 1.50697 * 120.03119 * 180.29242 * 11 10 9 13 13 C 1.50700 * 109.47117 * 184.99622 * 3 2 1 14 14 O 1.21279 * 120.00381 * 245.00000 * 13 3 2 15 15 N 1.34786 * 120.00076 * 65.00268 * 13 3 2 16 16 C 1.46498 * 120.00180 * 180.02562 * 15 13 3 17 17 C 1.53000 * 109.47055 * 180.02562 * 16 15 13 18 18 H 1.08995 * 113.04386 * 53.24034 * 17 16 15 19 19 C 1.53946 * 113.76858 * 185.00236 * 17 16 15 20 20 C 1.53937 * 86.40862 * 137.95938 * 19 17 16 21 21 N 1.47579 * 86.11952 * 336.33591 * 20 19 17 22 22 C 1.36933 * 134.49435 * 204.64187 * 21 20 19 23 23 H 1.08002 * 119.99884 * 180.02562 * 22 21 20 24 24 C 1.38811 * 120.00501 * 359.97438 * 22 21 20 25 25 N 1.31628 * 119.99474 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00636 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.46908 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.47006 * 119.99811 * 26 24 22 29 29 H 1.48503 * 109.47257 * 240.00009 * 26 24 22 30 30 H 1.09003 * 109.47010 * 60.00045 * 1 2 3 31 31 H 1.08996 * 109.47058 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47220 * 300.00354 * 1 2 3 33 33 H 1.09004 * 109.47584 * 240.00039 * 2 1 3 34 34 H 1.09003 * 109.47010 * 119.99955 * 2 1 3 35 35 H 1.07995 * 120.02790 * 359.96948 * 7 6 5 36 36 H 1.07999 * 119.96975 * 179.97438 * 8 7 6 37 37 H 1.07998 * 119.94532 * 179.97438 * 9 8 7 38 38 H 1.07998 * 119.96639 * 179.97438 * 10 9 8 39 39 H 1.08994 * 109.47823 * 270.32526 * 12 11 10 40 40 H 1.09002 * 109.46657 * 30.32249 * 12 11 10 41 41 H 1.09003 * 109.47088 * 150.31836 * 12 11 10 42 42 H 0.97003 * 119.99573 * 359.97438 * 15 13 3 43 43 H 1.08997 * 109.46947 * 59.99442 * 16 15 13 44 44 H 1.09000 * 109.46854 * 299.99825 * 16 15 13 45 45 H 1.09006 * 113.74492 * 23.55476 * 19 17 16 46 46 H 1.09000 * 113.73481 * 252.36017 * 19 17 16 47 47 H 1.08995 * 113.77218 * 90.64077 * 20 19 17 48 48 H 1.09008 * 113.77017 * 222.03769 * 20 19 17 49 49 H 0.96997 * 119.99868 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 8 1.6620 2.0814 1.2210 6 6 0.5663 2.8847 1.1835 7 6 -0.1988 2.9629 0.0287 8 6 -1.3121 3.7797 -0.0067 9 6 -1.6641 4.5195 1.1074 10 6 -0.9033 4.4432 2.2592 11 6 0.2071 3.6223 2.3020 12 6 1.0321 3.5346 3.5601 13 6 3.5419 1.4443 -0.1237 14 8 4.2250 1.8611 0.7876 15 7 4.1261 0.9828 -1.2473 16 6 5.5862 0.9840 -1.3674 17 6 5.9863 0.4139 -2.7297 18 1 5.4922 0.9134 -3.5630 19 6 7.5065 0.2560 -2.9140 20 6 7.1886 -1.1003 -3.5689 21 7 5.9289 -1.0626 -2.8009 22 6 5.0573 -2.0126 -2.3396 23 1 4.1791 -1.7161 -1.7853 24 6 5.3019 -3.3568 -2.5853 25 7 6.3714 -3.7180 -3.2622 26 14 4.1125 -4.6528 -1.9567 27 1 2.9981 -3.9916 -1.2313 28 1 3.5689 -5.4237 -3.1036 29 1 4.8254 -5.5733 -1.0349 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.0760 2.3858 -0.8418 36 1 -1.9077 3.8413 -0.9055 37 1 -2.5347 5.1579 1.0776 38 1 -1.1801 5.0223 3.1278 39 1 1.8141 4.2935 3.5355 40 1 0.3920 3.7005 4.4266 41 1 1.4869 2.5463 3.6282 42 1 3.5797 0.6491 -1.9761 43 1 6.0163 0.3705 -0.5758 44 1 5.9572 2.0050 -1.2780 45 1 8.0560 0.1726 -1.9762 46 1 7.9432 0.9826 -3.5991 47 1 7.0469 -1.0446 -4.6482 48 1 7.8627 -1.9024 -3.2679 49 1 6.5425 -4.6573 -3.4337 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670696880.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:45 Heat of formation + Delta-G solvation = -16.166201 kcal Electronic energy + Delta-G solvation = -29076.898204 eV Core-core repulsion = 25198.313934 eV Total energy + Delta-G solvation = -3878.584269 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.87154 -40.57905 -39.56864 -38.35649 -35.74294 -34.81987 -34.16200 -33.40931 -31.18336 -30.10965 -29.73195 -28.05004 -27.47298 -25.27651 -24.15926 -23.88689 -22.66481 -22.50507 -21.35187 -20.74099 -19.31725 -18.95028 -18.15791 -17.18462 -17.11425 -16.86057 -16.71196 -16.33909 -15.96181 -15.79814 -15.62334 -15.31981 -14.86184 -14.81569 -14.67482 -14.38858 -14.02863 -13.69255 -13.58915 -13.35515 -13.28856 -13.18331 -13.01933 -12.96335 -12.81864 -12.68938 -12.57036 -12.31680 -12.27211 -12.12476 -11.95397 -11.81888 -11.52056 -11.49043 -11.34552 -10.84450 -10.75663 -10.11090 -9.73273 -9.05492 -8.87358 -7.85500 -5.16879 0.39387 0.49005 1.42343 1.43737 1.45967 1.53739 1.64055 2.45987 2.55646 2.82764 3.30126 3.38993 3.50615 3.59443 3.68390 3.87911 3.95103 3.99926 4.09145 4.13364 4.23255 4.34111 4.34999 4.43136 4.46337 4.60790 4.63514 4.69244 4.71470 4.76267 4.77896 4.87237 4.96592 4.98441 5.01713 5.06858 5.09566 5.24167 5.30947 5.34299 5.37313 5.42960 5.54500 5.62217 5.62845 5.75295 5.87769 5.99140 6.34270 6.50283 6.96744 7.11086 7.67000 8.61405 9.31705 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.015147 B = 0.003063 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.145493 B = 9138.958978 C =10091.538804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.137 4.137 3 C 0.075 3.925 4 H 0.127 0.873 5 O -0.303 6.303 6 C 0.103 3.897 7 C -0.214 4.214 8 C -0.088 4.088 9 C -0.156 4.156 10 C -0.087 4.087 11 C -0.138 4.138 12 C -0.103 4.103 13 C 0.507 3.493 14 O -0.572 6.572 15 N -0.702 5.702 16 C 0.133 3.867 17 C 0.134 3.866 18 H 0.077 0.923 19 C -0.132 4.132 20 C 0.150 3.850 21 N -0.630 5.630 22 C -0.208 4.208 23 H 0.089 0.911 24 C -0.072 4.072 25 N -0.956 5.956 26 Si 0.962 3.038 27 H -0.260 1.260 28 H -0.294 1.294 29 H -0.303 1.303 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.052 0.948 33 H 0.091 0.909 34 H 0.059 0.941 35 H 0.143 0.857 36 H 0.150 0.850 37 H 0.149 0.851 38 H 0.149 0.851 39 H 0.063 0.937 40 H 0.085 0.915 41 H 0.048 0.952 42 H 0.411 0.589 43 H 0.042 0.958 44 H 0.081 0.919 45 H 0.076 0.924 46 H 0.094 0.906 47 H 0.024 0.976 48 H 0.037 0.963 49 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.091 17.405 4.867 24.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.175 4.175 3 C 0.015 3.985 4 H 0.145 0.855 5 O -0.216 6.216 6 C 0.059 3.941 7 C -0.232 4.232 8 C -0.106 4.106 9 C -0.174 4.174 10 C -0.105 4.105 11 C -0.139 4.139 12 C -0.160 4.160 13 C 0.293 3.707 14 O -0.451 6.451 15 N -0.354 5.354 16 C 0.008 3.992 17 C 0.028 3.972 18 H 0.094 0.906 19 C -0.170 4.170 20 C 0.025 3.975 21 N -0.356 5.356 22 C -0.337 4.337 23 H 0.106 0.894 24 C -0.264 4.264 25 N -0.606 5.606 26 Si 0.792 3.208 27 H -0.185 1.185 28 H -0.221 1.221 29 H -0.231 1.231 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.071 0.929 33 H 0.110 0.890 34 H 0.078 0.922 35 H 0.161 0.839 36 H 0.167 0.833 37 H 0.167 0.833 38 H 0.167 0.833 39 H 0.082 0.918 40 H 0.103 0.897 41 H 0.068 0.932 42 H 0.247 0.753 43 H 0.060 0.940 44 H 0.099 0.901 45 H 0.094 0.906 46 H 0.113 0.887 47 H 0.042 0.958 48 H 0.055 0.945 49 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -15.595 17.353 5.740 24.027 hybrid contribution -0.258 -1.665 -0.297 1.711 sum -15.853 15.688 5.443 22.958 Atomic orbital electron populations 1.21864 0.92661 1.03121 1.02669 1.21974 0.98786 0.92900 1.03826 1.22366 0.91003 0.96243 0.88881 0.85537 1.86178 1.43432 1.58945 1.33017 1.19233 0.87439 0.91895 0.95560 1.21541 0.98768 1.05008 0.97885 1.21280 0.95392 0.94395 0.99515 1.21419 1.01435 1.01496 0.93055 1.21185 0.92967 0.96747 0.99586 1.19575 0.99455 0.99677 0.95205 1.20578 0.99066 1.01857 0.94483 1.20788 0.90464 0.77278 0.82153 1.90679 1.66087 1.48214 1.40113 1.45811 1.08374 1.63173 1.18063 1.21585 0.79261 1.00432 0.97903 1.22738 0.95565 0.84576 0.94324 0.90597 1.23567 0.94710 0.97510 1.01261 1.22159 0.87396 0.94572 0.93417 1.46514 1.26188 1.00735 1.62190 1.19360 1.02195 0.86054 1.26073 0.89361 1.25496 0.99899 0.98941 1.02109 1.70008 1.29013 1.15008 1.46545 0.85236 0.78821 0.79677 0.77093 1.18452 1.22144 1.23055 0.90290 0.91300 0.92930 0.89021 0.92206 0.83947 0.83258 0.83293 0.83306 0.91828 0.89661 0.93240 0.75261 0.93981 0.90106 0.90576 0.88746 0.95846 0.94462 0.94705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 8.48 71.98 0.61 -2.26 16 2 C -0.14 -3.40 5.61 30.59 0.17 -3.23 16 3 C 0.07 1.97 2.53 29.85 0.08 2.05 16 4 H 0.13 2.57 5.43 -2.39 -0.01 2.56 16 5 O -0.30 -9.05 8.16 -73.53 -0.60 -9.65 16 6 C 0.10 2.57 5.63 22.51 0.13 2.70 16 7 C -0.21 -4.13 7.36 22.37 0.16 -3.97 16 8 C -0.09 -1.35 10.04 22.26 0.22 -1.12 16 9 C -0.16 -2.27 10.04 22.28 0.22 -2.04 16 10 C -0.09 -1.48 9.70 22.25 0.22 -1.26 16 11 C -0.14 -3.15 5.89 -19.77 -0.12 -3.27 16 12 C -0.10 -2.27 9.79 71.24 0.70 -1.57 16 13 C 0.51 16.96 7.18 87.66 0.63 17.59 16 14 O -0.57 -24.10 16.51 15.96 0.26 -23.84 16 15 N -0.70 -21.85 5.46 -463.06 -2.53 -24.37 16 16 C 0.13 4.50 5.55 86.38 0.48 4.98 16 17 C 0.13 4.68 4.35 45.03 0.20 4.87 16 18 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 19 C -0.13 -4.43 7.85 31.25 0.25 -4.19 16 20 C 0.15 6.73 7.51 86.48 0.65 7.38 16 21 N -0.63 -29.46 3.59 -693.26 -2.49 -31.95 16 22 C -0.21 -10.79 10.52 84.03 0.88 -9.91 16 23 H 0.09 4.27 7.83 -2.91 -0.02 4.25 16 24 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 25 N -0.96 -56.88 11.39 21.65 0.25 -56.63 16 26 Si 0.96 44.88 29.55 68.60 2.03 46.90 16 27 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 28 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 29 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 30 H 0.08 1.21 6.73 -2.39 -0.02 1.19 16 31 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.05 1.12 6.53 -2.39 -0.02 1.11 16 33 H 0.09 2.23 7.77 -2.39 -0.02 2.22 16 34 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.14 2.31 4.27 -2.91 -0.01 2.30 16 36 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 37 H 0.15 1.31 8.06 -2.91 -0.02 1.28 16 38 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 39 H 0.06 1.41 8.14 -2.39 -0.02 1.40 16 40 H 0.08 1.40 8.09 -2.39 -0.02 1.38 16 41 H 0.05 1.30 7.53 -2.39 -0.02 1.28 16 42 H 0.41 11.33 8.18 -92.71 -0.76 10.57 16 43 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 45 H 0.08 2.59 8.10 -2.38 -0.02 2.57 16 46 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 47 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.04 1.93 7.16 -2.38 -0.02 1.92 16 49 H 0.24 14.28 8.31 -92.71 -0.77 13.51 16 Total: -1.00 -73.05 394.74 3.06 -69.99 By element: Atomic # 1 Polarization: 26.10 SS G_CDS: 0.19 Total: 26.29 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: 5.94 Total: 3.24 kcal Atomic # 7 Polarization: -108.19 SS G_CDS: -4.77 Total: -112.95 kcal Atomic # 8 Polarization: -33.15 SS G_CDS: -0.34 Total: -33.48 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Total: -73.05 3.06 -69.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670696880.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.825 kcal (2) G-P(sol) polarization free energy of solvation -73.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds