Wall clock time and date at job start Tue Mar 31 2020 16:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47297 * 2 1 4 4 H 1.09004 * 109.47417 * 304.99847 * 3 2 1 5 5 O 1.42904 * 109.46974 * 65.00164 * 3 2 1 6 6 C 1.35901 * 116.99826 * 261.02262 * 5 3 2 7 7 C 1.38749 * 120.05609 * 5.64631 * 6 5 3 8 8 C 1.38123 * 119.94517 * 180.02562 * 7 6 5 9 9 C 1.38292 * 120.05588 * 359.97438 * 8 7 6 10 10 C 1.38244 * 120.10720 * 0.04468 * 9 8 7 11 11 C 1.38162 * 120.05857 * 359.68085 * 10 9 8 12 12 C 1.50697 * 120.02941 * 180.29790 * 11 10 9 13 13 C 1.50699 * 109.47217 * 184.99953 * 3 2 1 14 14 O 1.21289 * 119.99834 * 245.00384 * 13 3 2 15 15 N 1.34777 * 120.00177 * 64.72176 * 13 3 2 16 16 C 1.46501 * 120.00192 * 180.27720 * 15 13 3 17 17 C 1.52999 * 109.47068 * 180.02562 * 16 15 13 18 18 H 1.08997 * 112.96237 * 306.67771 * 17 16 15 19 19 C 1.53939 * 113.76982 * 174.99974 * 17 16 15 20 20 C 1.53945 * 86.28979 * 222.08886 * 19 17 16 21 21 N 1.47571 * 86.11685 * 23.60839 * 20 19 17 22 22 C 1.36937 * 134.49346 * 155.36050 * 21 20 19 23 23 H 1.08000 * 120.00080 * 176.46570 * 22 21 20 24 24 C 1.38810 * 120.00166 * 356.46748 * 22 21 20 25 25 N 1.31625 * 119.99733 * 6.94705 * 24 22 21 26 26 Si 1.86800 * 120.00182 * 186.95220 * 24 22 21 27 27 H 1.48498 * 109.47128 * 94.97848 * 26 24 22 28 28 H 1.48500 * 109.46955 * 214.97578 * 26 24 22 29 29 H 1.48502 * 109.47016 * 334.97469 * 26 24 22 30 30 H 1.09003 * 109.47041 * 59.99920 * 1 2 3 31 31 H 1.08993 * 109.47102 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47051 * 300.00318 * 1 2 3 33 33 H 1.09006 * 109.46919 * 239.99778 * 2 1 3 34 34 H 1.08996 * 109.46843 * 120.00424 * 2 1 3 35 35 H 1.08000 * 120.02891 * 0.03446 * 7 6 5 36 36 H 1.08002 * 119.97500 * 180.02562 * 8 7 6 37 37 H 1.07999 * 119.94621 * 180.02562 * 9 8 7 38 38 H 1.07999 * 119.96584 * 179.97438 * 10 9 8 39 39 H 1.09000 * 109.47261 * 270.27575 * 12 11 10 40 40 H 1.09002 * 109.47474 * 30.27458 * 12 11 10 41 41 H 1.09005 * 109.47637 * 150.27071 * 12 11 10 42 42 H 0.96998 * 119.99766 * 0.28477 * 15 13 3 43 43 H 1.08996 * 109.46834 * 300.00174 * 16 15 13 44 44 H 1.08994 * 109.47060 * 60.00056 * 16 15 13 45 45 H 1.09005 * 113.74290 * 336.43621 * 19 17 16 46 46 H 1.09003 * 113.74013 * 107.63497 * 19 17 16 47 47 H 1.09007 * 113.76747 * 137.90817 * 20 19 17 48 48 H 1.09004 * 113.76846 * 269.18926 * 20 19 17 49 49 H 0.96998 * 119.99458 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 8 1.6621 2.0813 1.2211 6 6 0.5613 2.8776 1.1858 7 6 -0.2078 2.9492 0.0332 8 6 -1.3258 3.7596 -0.0004 9 6 -1.6791 4.4989 1.1137 10 6 -0.9141 4.4296 2.2631 11 6 0.2019 3.6160 2.3036 12 6 1.0315 3.5358 3.5591 13 6 3.5420 1.4442 -0.1238 14 8 4.2251 1.8609 0.7877 15 7 4.1263 0.9775 -1.2451 16 6 5.5865 0.9736 -1.3630 17 6 5.9868 0.3982 -2.7230 18 1 5.5436 -0.5781 -2.9188 19 6 7.4994 0.4601 -3.0020 20 6 7.1171 0.8968 -4.4279 21 7 5.8436 1.3536 -3.8386 22 6 4.9057 2.2885 -4.1871 23 1 4.0062 2.3963 -3.5990 24 6 5.1109 3.0977 -5.2961 25 7 6.1365 2.8771 -6.0910 26 14 3.9316 4.4999 -5.6602 27 1 4.4670 5.7593 -5.0837 28 1 3.7827 4.6524 -7.1299 29 1 2.6077 4.2027 -5.0567 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 0.0673 2.3716 -0.8369 36 1 -1.9251 3.8154 -0.8972 37 1 -2.5538 5.1317 1.0856 38 1 -1.1918 5.0082 3.1316 39 1 1.8089 4.2993 3.5304 40 1 0.3933 3.6997 4.4275 41 1 1.4923 2.5504 3.6279 42 1 3.5800 0.6442 -1.9740 43 1 5.9607 1.9936 -1.2760 44 1 6.0135 0.3610 -0.5690 45 1 8.0197 1.2299 -2.4319 46 1 7.9942 -0.5100 -2.9562 47 1 7.7346 1.7050 -4.8202 48 1 7.0076 0.0676 -5.1268 49 1 6.2801 3.4428 -6.8657 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670696881.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:49 Heat of formation + Delta-G solvation = 2.597020 kcal Electronic energy + Delta-G solvation = -29123.234886 eV Core-core repulsion = 25245.464251 eV Total energy + Delta-G solvation = -3877.770635 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.83936 -39.33204 -38.07340 -37.29280 -34.41153 -33.75278 -32.57216 -32.21248 -30.33351 -28.75562 -27.93473 -26.98953 -26.46189 -23.41269 -23.27654 -22.49705 -21.67324 -21.47300 -20.07113 -19.13022 -18.37528 -17.50906 -16.58347 -16.05642 -15.89853 -15.70525 -15.30849 -15.24618 -14.72309 -14.55519 -14.10343 -13.99974 -13.80332 -13.57169 -13.36418 -13.23326 -12.97740 -12.77203 -12.42492 -12.32822 -12.15761 -11.98407 -11.84758 -11.51429 -11.44583 -11.32098 -11.18749 -11.09274 -11.03194 -10.77600 -10.63585 -10.56727 -10.04650 -9.79569 -9.66138 -9.36458 -8.91863 -8.79208 -8.67411 -8.16350 -6.95092 -5.81994 -3.13403 1.20503 1.33081 2.71927 2.77629 3.34366 3.39387 3.42149 3.64546 3.68446 4.38115 4.51059 4.58913 4.67316 4.70454 4.80969 4.96825 4.98543 5.08987 5.16965 5.21513 5.29025 5.35027 5.43850 5.51242 5.55387 5.57762 5.65878 5.68281 5.71317 5.76037 5.83114 5.86654 6.01791 6.03722 6.15036 6.23554 6.27057 6.35911 6.36330 6.41989 6.57650 6.64517 6.67122 6.80414 7.19544 7.29684 7.37861 7.53934 7.76642 7.93538 8.43194 8.98976 9.66443 10.54742 11.35023 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.011789 B = 0.003491 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.512813 B = 8019.542858 C = 9330.408290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.136 4.136 3 C 0.063 3.937 4 H 0.103 0.897 5 O -0.278 6.278 6 C 0.133 3.867 7 C -0.208 4.208 8 C -0.085 4.085 9 C -0.158 4.158 10 C -0.086 4.086 11 C -0.116 4.116 12 C -0.105 4.105 13 C 0.511 3.489 14 O -0.528 6.528 15 N -0.709 5.709 16 C 0.125 3.875 17 C 0.126 3.874 18 H 0.050 0.950 19 C -0.155 4.155 20 C 0.158 3.842 21 N -0.602 5.602 22 C -0.221 4.221 23 H 0.077 0.923 24 C -0.004 4.004 25 N -0.917 5.917 26 Si 0.905 3.095 27 H -0.288 1.288 28 H -0.291 1.291 29 H -0.282 1.282 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.133 0.867 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.126 0.874 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.071 0.929 42 H 0.402 0.598 43 H 0.073 0.927 44 H 0.062 0.938 45 H 0.077 0.923 46 H 0.054 0.946 47 H 0.073 0.927 48 H 0.027 0.973 49 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.688 -4.441 13.750 19.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.174 4.174 3 C 0.003 3.997 4 H 0.120 0.880 5 O -0.190 6.190 6 C 0.087 3.913 7 C -0.227 4.227 8 C -0.104 4.104 9 C -0.176 4.176 10 C -0.104 4.104 11 C -0.117 4.117 12 C -0.162 4.162 13 C 0.295 3.705 14 O -0.404 6.404 15 N -0.361 5.361 16 C 0.000 4.000 17 C 0.019 3.981 18 H 0.067 0.933 19 C -0.194 4.194 20 C 0.033 3.967 21 N -0.329 5.329 22 C -0.349 4.349 23 H 0.095 0.905 24 C -0.201 4.201 25 N -0.564 5.564 26 Si 0.736 3.264 27 H -0.215 1.215 28 H -0.217 1.217 29 H -0.207 1.207 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.151 0.849 36 H 0.141 0.859 37 H 0.139 0.861 38 H 0.144 0.856 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.237 0.763 43 H 0.092 0.908 44 H 0.080 0.920 45 H 0.095 0.905 46 H 0.073 0.927 47 H 0.091 0.909 48 H 0.045 0.955 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -12.173 -3.926 14.365 19.234 hybrid contribution -1.092 0.625 -1.124 1.687 sum -13.265 -3.302 13.241 19.031 Atomic orbital electron populations 1.21938 0.94527 1.02422 1.02431 1.21960 0.97299 0.93953 1.04154 1.22423 0.93718 0.95300 0.88267 0.87971 1.86183 1.41812 1.58576 1.32445 1.18895 0.87010 0.91215 0.94181 1.21407 0.98324 1.04645 0.98278 1.20920 0.95921 0.95220 0.98292 1.21019 1.01079 1.01817 0.93678 1.20865 0.93839 0.97361 0.98312 1.19282 0.98308 0.98834 0.95258 1.20609 0.98801 1.03391 0.93380 1.20129 0.88939 0.78448 0.83020 1.90707 1.64737 1.45807 1.39102 1.45868 1.08831 1.63773 1.17579 1.21803 0.78306 1.02132 0.97710 1.22503 0.94552 0.93148 0.87934 0.93275 1.23760 0.94808 1.00059 1.00802 1.22209 0.87101 0.96449 0.90921 1.46105 1.24003 1.38691 1.24062 1.18904 0.98637 1.08436 1.08908 0.90525 1.24748 0.98419 0.99539 0.97406 1.69831 1.30416 1.40018 1.16117 0.86217 0.80011 0.82912 0.77278 1.21548 1.21705 1.20738 0.92183 0.91935 0.92032 0.89609 0.90112 0.84907 0.85858 0.86070 0.85562 0.91258 0.91942 0.90959 0.76329 0.90824 0.92001 0.90478 0.92735 0.90915 0.95535 0.93649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 8.47 37.16 0.31 -1.13 16 2 C -0.14 -1.44 5.61 -26.73 -0.15 -1.59 16 3 C 0.06 0.86 2.54 -27.89 -0.07 0.79 16 4 H 0.10 1.31 5.45 -51.93 -0.28 1.03 16 5 O -0.28 -4.17 8.17 -39.29 -0.32 -4.50 16 6 C 0.13 1.80 5.62 -39.22 -0.22 1.58 16 7 C -0.21 -2.52 7.32 -39.43 -0.29 -2.81 16 8 C -0.09 -0.92 10.04 -39.60 -0.40 -1.32 16 9 C -0.16 -1.60 10.04 -39.56 -0.40 -1.99 16 10 C -0.09 -0.90 9.70 -39.61 -0.38 -1.29 16 11 C -0.12 -1.45 5.89 -104.48 -0.62 -2.06 16 12 C -0.11 -1.18 9.79 36.00 0.35 -0.83 16 13 C 0.51 8.65 7.18 -10.99 -0.08 8.57 16 14 O -0.53 -10.95 16.51 -14.31 -0.24 -11.18 16 15 N -0.71 -11.50 5.45 -60.30 -0.33 -11.83 16 16 C 0.12 2.20 5.54 -4.04 -0.02 2.18 16 17 C 0.13 2.34 4.33 -66.87 -0.29 2.05 16 18 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 19 C -0.16 -2.76 7.86 -25.81 -0.20 -2.97 16 20 C 0.16 3.55 7.53 -2.98 -0.02 3.53 16 21 N -0.60 -14.29 3.57 -170.78 -0.61 -14.90 16 22 C -0.22 -5.81 10.50 -15.06 -0.16 -5.97 16 23 H 0.08 1.92 7.84 -52.49 -0.41 1.51 16 24 C 0.00 -0.12 5.50 -17.43 -0.10 -0.21 16 25 N -0.92 -26.53 11.42 55.49 0.63 -25.90 16 26 Si 0.91 21.81 29.56 -169.99 -5.02 16.78 16 27 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 28 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 29 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 30 H 0.06 0.52 6.69 -51.93 -0.35 0.17 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.64 6.50 -51.93 -0.34 0.30 16 33 H 0.09 0.80 7.75 -51.93 -0.40 0.40 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.13 1.47 4.24 -52.49 -0.22 1.25 16 36 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 37 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 38 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 41 H 0.07 0.89 7.53 -51.93 -0.39 0.49 16 42 H 0.40 5.97 8.17 -40.82 -0.33 5.64 16 43 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 44 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.08 1.36 8.10 -51.93 -0.42 0.94 16 46 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.07 1.83 7.16 -51.93 -0.37 1.46 16 48 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 394.60 15.07 5.95 5.95 Total: -1.00 -32.62 394.60 -10.40 -43.02 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -7.73 Total: 6.04 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -2.73 Total: -3.48 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: -0.31 Total: -52.63 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -0.56 Total: -15.68 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.62 -10.40 -43.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670696881.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.614 kcal (2) G-P(sol) polarization free energy of solvation -32.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds