Wall clock time and date at job start Tue Mar 31 2020 16:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47297 * 2 1 4 4 H 1.09004 * 109.47417 * 304.99847 * 3 2 1 5 5 O 1.42904 * 109.46974 * 65.00164 * 3 2 1 6 6 C 1.35901 * 116.99826 * 261.02262 * 5 3 2 7 7 C 1.38749 * 120.05609 * 5.64631 * 6 5 3 8 8 C 1.38123 * 119.94517 * 180.02562 * 7 6 5 9 9 C 1.38292 * 120.05588 * 359.97438 * 8 7 6 10 10 C 1.38244 * 120.10720 * 0.04468 * 9 8 7 11 11 C 1.38162 * 120.05857 * 359.68085 * 10 9 8 12 12 C 1.50697 * 120.02941 * 180.29790 * 11 10 9 13 13 C 1.50699 * 109.47217 * 184.99953 * 3 2 1 14 14 O 1.21289 * 119.99834 * 245.00384 * 13 3 2 15 15 N 1.34777 * 120.00177 * 64.72176 * 13 3 2 16 16 C 1.46501 * 120.00192 * 180.27720 * 15 13 3 17 17 C 1.52999 * 109.47068 * 180.02562 * 16 15 13 18 18 H 1.08997 * 112.96237 * 306.67771 * 17 16 15 19 19 C 1.53939 * 113.76982 * 174.99974 * 17 16 15 20 20 C 1.53945 * 86.28979 * 222.08886 * 19 17 16 21 21 N 1.47571 * 86.11685 * 23.60839 * 20 19 17 22 22 C 1.36937 * 134.49346 * 155.36050 * 21 20 19 23 23 H 1.08000 * 120.00080 * 176.46570 * 22 21 20 24 24 C 1.38810 * 120.00166 * 356.46748 * 22 21 20 25 25 N 1.31625 * 119.99733 * 6.94705 * 24 22 21 26 26 Si 1.86800 * 120.00182 * 186.95220 * 24 22 21 27 27 H 1.48498 * 109.47128 * 94.97848 * 26 24 22 28 28 H 1.48500 * 109.46955 * 214.97578 * 26 24 22 29 29 H 1.48502 * 109.47016 * 334.97469 * 26 24 22 30 30 H 1.09003 * 109.47041 * 59.99920 * 1 2 3 31 31 H 1.08993 * 109.47102 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47051 * 300.00318 * 1 2 3 33 33 H 1.09006 * 109.46919 * 239.99778 * 2 1 3 34 34 H 1.08996 * 109.46843 * 120.00424 * 2 1 3 35 35 H 1.08000 * 120.02891 * 0.03446 * 7 6 5 36 36 H 1.08002 * 119.97500 * 180.02562 * 8 7 6 37 37 H 1.07999 * 119.94621 * 180.02562 * 9 8 7 38 38 H 1.07999 * 119.96584 * 179.97438 * 10 9 8 39 39 H 1.09000 * 109.47261 * 270.27575 * 12 11 10 40 40 H 1.09002 * 109.47474 * 30.27458 * 12 11 10 41 41 H 1.09005 * 109.47637 * 150.27071 * 12 11 10 42 42 H 0.96998 * 119.99766 * 0.28477 * 15 13 3 43 43 H 1.08996 * 109.46834 * 300.00174 * 16 15 13 44 44 H 1.08994 * 109.47060 * 60.00056 * 16 15 13 45 45 H 1.09005 * 113.74290 * 336.43621 * 19 17 16 46 46 H 1.09003 * 113.74013 * 107.63497 * 19 17 16 47 47 H 1.09007 * 113.76747 * 137.90817 * 20 19 17 48 48 H 1.09004 * 113.76846 * 269.18926 * 20 19 17 49 49 H 0.96998 * 119.99458 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 8 1.6621 2.0813 1.2211 6 6 0.5613 2.8776 1.1858 7 6 -0.2078 2.9492 0.0332 8 6 -1.3258 3.7596 -0.0004 9 6 -1.6791 4.4989 1.1137 10 6 -0.9141 4.4296 2.2631 11 6 0.2019 3.6160 2.3036 12 6 1.0315 3.5358 3.5591 13 6 3.5420 1.4442 -0.1238 14 8 4.2251 1.8609 0.7877 15 7 4.1263 0.9775 -1.2451 16 6 5.5865 0.9736 -1.3630 17 6 5.9868 0.3982 -2.7230 18 1 5.5436 -0.5781 -2.9188 19 6 7.4994 0.4601 -3.0020 20 6 7.1171 0.8968 -4.4279 21 7 5.8436 1.3536 -3.8386 22 6 4.9057 2.2885 -4.1871 23 1 4.0062 2.3963 -3.5990 24 6 5.1109 3.0977 -5.2961 25 7 6.1365 2.8771 -6.0910 26 14 3.9316 4.4999 -5.6602 27 1 4.4670 5.7593 -5.0837 28 1 3.7827 4.6524 -7.1299 29 1 2.6077 4.2027 -5.0567 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 0.0673 2.3716 -0.8369 36 1 -1.9251 3.8154 -0.8972 37 1 -2.5538 5.1317 1.0856 38 1 -1.1918 5.0082 3.1316 39 1 1.8089 4.2993 3.5304 40 1 0.3933 3.6997 4.4275 41 1 1.4923 2.5504 3.6279 42 1 3.5800 0.6442 -1.9740 43 1 5.9607 1.9936 -1.2760 44 1 6.0135 0.3610 -0.5690 45 1 8.0197 1.2299 -2.4319 46 1 7.9942 -0.5100 -2.9562 47 1 7.7346 1.7050 -4.8202 48 1 7.0076 0.0676 -5.1268 49 1 6.2801 3.4428 -6.8657 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670696881.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:48 Heat of formation + Delta-G solvation = -16.107387 kcal Electronic energy + Delta-G solvation = -29124.045970 eV Core-core repulsion = 25245.464251 eV Total energy + Delta-G solvation = -3878.581719 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.87556 -40.59161 -39.59539 -38.36404 -35.74076 -34.80489 -34.18158 -33.41662 -31.21099 -30.11141 -29.73632 -28.05092 -27.47916 -25.29285 -24.17225 -23.88228 -22.65468 -22.52656 -21.34085 -20.75264 -19.33270 -18.95566 -18.17485 -17.22243 -17.09822 -16.86128 -16.68084 -16.36369 -16.11296 -15.69301 -15.62916 -15.30827 -14.94363 -14.80985 -14.64060 -14.36475 -14.05659 -13.66749 -13.62405 -13.32258 -13.27630 -13.18740 -13.02108 -13.00088 -12.81340 -12.69694 -12.60519 -12.32047 -12.29478 -12.12100 -11.94390 -11.84656 -11.53817 -11.48833 -11.35308 -10.83292 -10.73064 -10.10738 -9.75895 -9.07463 -8.88922 -7.87942 -5.17823 0.36478 0.46261 1.41388 1.44762 1.45449 1.50956 1.61630 2.44596 2.55164 2.80107 3.31794 3.36217 3.49522 3.60569 3.71647 3.85830 3.93319 3.99531 4.10024 4.15867 4.21672 4.35238 4.37288 4.40783 4.44841 4.61562 4.64140 4.71374 4.71618 4.74980 4.77808 4.86729 4.95959 4.97339 5.04144 5.06851 5.09591 5.28117 5.29513 5.33549 5.36761 5.40332 5.52250 5.59313 5.61291 5.75994 5.84919 5.98098 6.32433 6.49337 6.95257 7.11257 7.65720 8.60561 9.29454 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.011789 B = 0.003491 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.512813 B = 8019.542858 C = 9330.408290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.129 4.129 3 C 0.067 3.933 4 H 0.111 0.889 5 O -0.300 6.300 6 C 0.105 3.895 7 C -0.217 4.217 8 C -0.092 4.092 9 C -0.156 4.156 10 C -0.087 4.087 11 C -0.138 4.138 12 C -0.102 4.102 13 C 0.508 3.492 14 O -0.572 6.572 15 N -0.702 5.702 16 C 0.133 3.867 17 C 0.135 3.865 18 H 0.077 0.923 19 C -0.132 4.132 20 C 0.149 3.851 21 N -0.629 5.629 22 C -0.212 4.212 23 H 0.086 0.914 24 C -0.067 4.067 25 N -0.952 5.952 26 Si 0.960 3.040 27 H -0.299 1.299 28 H -0.296 1.296 29 H -0.263 1.263 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.047 0.953 33 H 0.102 0.898 34 H 0.074 0.926 35 H 0.139 0.861 36 H 0.145 0.855 37 H 0.149 0.851 38 H 0.152 0.848 39 H 0.060 0.940 40 H 0.087 0.913 41 H 0.054 0.946 42 H 0.411 0.589 43 H 0.040 0.960 44 H 0.082 0.918 45 H 0.075 0.925 46 H 0.095 0.905 47 H 0.036 0.964 48 H 0.024 0.976 49 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.001 -5.251 14.646 21.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C 0.008 3.992 4 H 0.128 0.872 5 O -0.213 6.213 6 C 0.060 3.940 7 C -0.235 4.235 8 C -0.110 4.110 9 C -0.174 4.174 10 C -0.105 4.105 11 C -0.138 4.138 12 C -0.158 4.158 13 C 0.294 3.706 14 O -0.451 6.451 15 N -0.354 5.354 16 C 0.008 3.992 17 C 0.029 3.971 18 H 0.094 0.906 19 C -0.170 4.170 20 C 0.024 3.976 21 N -0.356 5.356 22 C -0.341 4.341 23 H 0.103 0.897 24 C -0.260 4.260 25 N -0.602 5.602 26 Si 0.790 3.210 27 H -0.227 1.227 28 H -0.223 1.223 29 H -0.188 1.188 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.067 0.933 33 H 0.121 0.879 34 H 0.093 0.907 35 H 0.157 0.843 36 H 0.163 0.837 37 H 0.167 0.833 38 H 0.169 0.831 39 H 0.079 0.921 40 H 0.106 0.894 41 H 0.073 0.927 42 H 0.247 0.753 43 H 0.059 0.941 44 H 0.100 0.900 45 H 0.094 0.906 46 H 0.114 0.886 47 H 0.055 0.945 48 H 0.042 0.958 49 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -14.520 -4.773 15.278 21.610 hybrid contribution -0.385 0.863 -1.332 1.633 sum -14.905 -3.909 13.946 20.783 Atomic orbital electron populations 1.21891 0.93246 1.03400 1.02173 1.21961 0.98291 0.91773 1.04624 1.22463 0.91096 0.97257 0.88418 0.87191 1.86145 1.42866 1.59325 1.32990 1.19188 0.87251 0.92118 0.95392 1.21554 0.98755 1.05201 0.97979 1.21269 0.95581 0.94669 0.99459 1.21410 1.01547 1.01382 0.93079 1.21204 0.92957 0.96778 0.99534 1.19600 0.99336 0.99514 0.95375 1.20579 0.98921 1.02032 0.94301 1.20763 0.90395 0.77184 0.82259 1.90681 1.66074 1.47745 1.40605 1.45805 1.08403 1.63429 1.17744 1.21596 0.79275 1.00488 0.97834 1.22676 0.95155 0.92797 0.86499 0.90600 1.23561 0.94736 1.01936 0.96790 1.22179 0.86679 0.95279 0.93466 1.46455 1.23855 1.39490 1.25765 1.19291 0.98866 1.08123 1.07814 0.89663 1.25458 1.00256 1.02101 0.98207 1.70003 1.32416 1.41085 1.16686 0.85326 0.79200 0.79935 0.76579 1.22650 1.22316 1.18756 0.91387 0.90272 0.93340 0.87946 0.90736 0.84348 0.83705 0.83321 0.83068 0.92135 0.89432 0.92723 0.75301 0.94132 0.89972 0.90595 0.88631 0.94547 0.95786 0.94615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 8.47 71.98 0.61 -1.88 16 2 C -0.13 -2.53 5.61 30.59 0.17 -2.36 16 3 C 0.07 1.80 2.54 29.85 0.08 1.87 16 4 H 0.11 2.71 5.45 -2.38 -0.01 2.70 16 5 O -0.30 -9.11 8.17 -73.44 -0.60 -9.71 16 6 C 0.11 2.83 5.62 22.51 0.13 2.96 16 7 C -0.22 -4.95 7.32 22.36 0.16 -4.79 16 8 C -0.09 -1.76 10.04 22.26 0.22 -1.53 16 9 C -0.16 -2.72 10.04 22.28 0.22 -2.49 16 10 C -0.09 -1.65 9.70 22.25 0.22 -1.43 16 11 C -0.14 -3.34 5.89 -19.77 -0.12 -3.46 16 12 C -0.10 -2.28 9.79 71.23 0.70 -1.58 16 13 C 0.51 17.03 7.18 87.66 0.63 17.66 16 14 O -0.57 -24.11 16.51 15.93 0.26 -23.85 16 15 N -0.70 -21.88 5.45 -463.06 -2.52 -24.40 16 16 C 0.13 4.50 5.54 86.38 0.48 4.98 16 17 C 0.13 4.70 4.33 45.09 0.20 4.90 16 18 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 19 C -0.13 -4.41 7.86 31.25 0.25 -4.17 16 20 C 0.15 6.70 7.53 86.48 0.65 7.35 16 21 N -0.63 -29.52 3.57 -694.24 -2.48 -32.00 16 22 C -0.21 -11.10 10.50 84.03 0.88 -10.22 16 23 H 0.09 4.19 7.84 -2.91 -0.02 4.16 16 24 C -0.07 -3.74 5.50 84.86 0.47 -3.28 16 25 N -0.95 -56.60 11.42 21.65 0.25 -56.36 16 26 Si 0.96 45.23 29.56 68.60 2.03 47.25 16 27 H -0.30 -14.41 7.11 99.48 0.71 -13.71 16 28 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 29 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 30 H 0.07 1.02 6.69 -2.39 -0.02 1.00 16 31 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.05 0.95 6.50 -2.39 -0.02 0.93 16 33 H 0.10 1.65 7.75 -2.38 -0.02 1.63 16 34 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.14 2.86 4.24 -2.91 -0.01 2.84 16 36 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 37 H 0.15 1.73 8.06 -2.91 -0.02 1.70 16 38 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 39 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.09 1.43 8.09 -2.39 -0.02 1.42 16 41 H 0.05 1.39 7.53 -2.38 -0.02 1.37 16 42 H 0.41 11.36 8.17 -92.71 -0.76 10.61 16 43 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 45 H 0.08 2.58 8.10 -2.38 -0.02 2.56 16 46 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 47 H 0.04 1.88 7.16 -2.38 -0.02 1.87 16 48 H 0.02 1.09 8.14 -2.38 -0.02 1.07 16 49 H 0.24 14.33 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -73.07 394.60 3.07 -70.00 By element: Atomic # 1 Polarization: 26.34 SS G_CDS: 0.20 Total: 26.54 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: 5.94 Total: 2.52 kcal Atomic # 7 Polarization: -108.00 SS G_CDS: -4.76 Total: -112.76 kcal Atomic # 8 Polarization: -33.22 SS G_CDS: -0.34 Total: -33.56 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Total: -73.07 3.07 -70.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670696881.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.896 kcal (2) G-P(sol) polarization free energy of solvation -73.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds