Wall clock time and date at job start Tue Mar 31 2020 16:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46712 * 2 1 4 4 N 1.46502 * 109.46824 * 180.02562 * 3 2 1 5 5 C 1.34777 * 119.99907 * 94.95964 * 4 3 2 6 6 O 1.21590 * 119.99636 * 185.67255 * 5 4 3 7 7 C 1.47533 * 120.00399 * 5.66503 * 5 4 3 8 8 C 1.39711 * 120.18698 * 55.04246 * 7 5 4 9 9 C 1.37789 * 119.90399 * 179.97438 * 8 7 5 10 10 C 1.38548 * 120.30475 * 0.02562 * 9 8 7 11 11 C 1.38064 * 120.38874 * 359.97438 * 10 9 8 12 12 C 1.38708 * 120.08092 * 0.02562 * 11 10 9 13 13 O 1.35655 * 120.14898 * 180.02562 * 12 11 10 14 14 C 1.46493 * 119.99987 * 274.95706 * 4 3 2 15 15 C 1.53044 * 109.46271 * 240.07180 * 14 4 3 16 16 C 1.53190 * 109.31597 * 178.61206 * 15 14 4 17 17 N 1.46931 * 108.77437 * 54.63484 * 16 15 14 18 18 C 1.36929 * 120.63002 * 126.41127 * 17 16 15 19 19 H 1.07991 * 120.00546 * 324.78954 * 18 17 16 20 20 C 1.38822 * 119.99576 * 144.78830 * 18 17 16 21 21 N 1.31618 * 120.00150 * 4.62019 * 20 18 17 22 22 Si 1.86805 * 119.99747 * 184.61760 * 20 18 17 23 23 H 1.48501 * 109.46921 * 89.99845 * 22 20 18 24 24 H 1.48495 * 109.47101 * 210.00071 * 22 20 18 25 25 H 1.48503 * 109.47160 * 330.00117 * 22 20 18 26 26 C 1.46927 * 118.73628 * 306.39178 * 17 16 15 27 27 C 1.53034 * 109.46365 * 119.99970 * 14 4 3 28 28 H 1.08996 * 109.47221 * 299.99998 * 1 2 3 29 29 H 1.08998 * 109.46949 * 60.00308 * 1 2 3 30 30 H 1.09000 * 109.47061 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47221 * 240.00002 * 2 1 3 32 32 H 1.08995 * 109.47019 * 119.99171 * 2 1 3 33 33 H 1.08992 * 109.47343 * 59.99545 * 3 2 1 34 34 H 1.09007 * 109.46971 * 299.99578 * 3 2 1 35 35 H 1.07996 * 120.04800 * 0.25583 * 8 7 5 36 36 H 1.07996 * 119.84913 * 179.97438 * 9 8 7 37 37 H 1.07991 * 119.80963 * 179.97438 * 10 9 8 38 38 H 1.07994 * 119.95642 * 180.02562 * 11 10 9 39 39 H 0.96692 * 114.00490 * 89.99941 * 13 12 11 40 40 H 1.09003 * 109.46288 * 0.02772 * 14 4 3 41 41 H 1.09007 * 109.49305 * 298.56719 * 15 14 4 42 42 H 1.09002 * 109.49938 * 58.65840 * 15 14 4 43 43 H 1.08998 * 109.58633 * 294.84624 * 16 15 14 44 44 H 1.09001 * 109.70472 * 174.48576 * 16 15 14 45 45 H 0.96995 * 120.00023 * 179.97438 * 21 20 18 46 46 H 1.08998 * 109.58395 * 293.81957 * 26 17 16 47 47 H 1.09003 * 109.70042 * 173.46832 * 26 17 16 48 48 H 1.09002 * 109.50038 * 301.33879 * 27 14 4 49 49 H 1.09004 * 109.49990 * 61.40217 * 27 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1783 1.5437 -1.1637 6 8 5.3897 1.4402 -1.1758 7 6 3.4456 1.7797 -2.4223 8 6 2.5837 2.8731 -2.5390 9 6 1.9027 3.0883 -3.7173 10 6 2.0680 2.2247 -4.7881 11 6 2.9165 1.1404 -4.6863 12 6 3.6101 0.9086 -3.5076 13 8 4.4446 -0.1561 -3.4063 14 6 4.2379 1.3328 1.2630 15 6 5.1164 2.5716 1.4522 16 6 5.8548 2.4696 2.7905 17 7 6.5890 1.1975 2.8297 18 6 7.9306 1.1744 3.1027 19 1 8.5672 1.9725 2.7506 20 6 8.4725 0.1249 3.8322 21 7 7.7151 -0.8926 4.1833 22 14 10.2767 0.1570 4.3154 23 1 10.4240 0.8228 5.6346 24 1 10.7906 -1.2335 4.4025 25 1 11.0497 0.9073 3.2933 26 6 5.8562 -0.0494 2.5709 27 6 5.1177 0.0809 1.2350 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 1.6765 1.9564 0.8899 34 1 1.6766 1.9564 -0.8901 35 1 2.4549 3.5512 -1.7084 36 1 1.2363 3.9335 -3.8064 37 1 1.5299 2.4007 -5.7077 38 1 3.0405 0.4720 -5.5254 39 1 5.3551 0.0310 -3.6727 40 1 3.5298 1.2606 2.0885 41 1 5.8413 2.6310 0.6402 42 1 4.4916 3.4648 1.4486 43 1 5.1350 2.5014 3.6084 44 1 6.5555 3.2989 2.8879 45 1 8.0938 -1.6260 4.6927 46 1 5.1365 -0.2230 3.3708 47 1 6.5561 -0.8836 2.5217 48 1 4.4938 -0.7988 1.0769 49 1 5.8422 0.1634 0.4248 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690132606.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:43 Heat of formation + Delta-G solvation = -27.089243 kcal Electronic energy + Delta-G solvation = -30085.047089 eV Core-core repulsion = 26205.989162 eV Total energy + Delta-G solvation = -3879.057928 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.72237 -39.07156 -36.87824 -36.80487 -35.84459 -33.32754 -32.20319 -31.33522 -30.09218 -29.80931 -29.24068 -26.20422 -25.25266 -23.66990 -22.89802 -22.08048 -21.92709 -21.55622 -19.72360 -19.02462 -18.27925 -17.20972 -16.63804 -16.12649 -15.90623 -15.68412 -15.05600 -14.80659 -14.58032 -14.30431 -14.22177 -13.77037 -13.64892 -13.40564 -13.20871 -12.91399 -12.68555 -12.50331 -12.40891 -12.35133 -12.12163 -11.93954 -11.74263 -11.39800 -11.36042 -11.01047 -10.82917 -10.78315 -10.77133 -10.68343 -10.24188 -10.04182 -9.91745 -9.64633 -9.51614 -9.26285 -9.07901 -8.86341 -8.39927 -8.18533 -6.45091 -5.68861 -3.21036 0.78201 0.99788 2.84506 3.13339 3.43559 3.47565 3.49464 3.51540 4.05991 4.42957 4.56183 4.62717 4.70151 4.85200 4.93119 5.04211 5.15835 5.23234 5.33137 5.42317 5.48567 5.53339 5.54474 5.62021 5.64406 5.71690 5.78354 5.93387 5.95142 5.98288 6.02753 6.08061 6.13460 6.22131 6.26938 6.43745 6.46968 6.49235 6.64641 6.73264 6.85450 6.96486 7.12618 7.19585 7.54133 7.55094 7.74499 7.87959 7.94325 8.44980 8.63738 9.34568 9.93806 10.53390 11.36905 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.016792 B = 0.003341 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.025149 B = 8379.254232 C = 8955.948066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.142 4.142 3 C 0.100 3.900 4 N -0.603 5.603 5 C 0.563 3.437 6 O -0.514 6.514 7 C -0.146 4.146 8 C -0.077 4.077 9 C -0.135 4.135 10 C -0.090 4.090 11 C -0.151 4.151 12 C 0.153 3.847 13 O -0.491 6.491 14 C 0.161 3.839 15 C -0.146 4.146 16 C 0.152 3.848 17 N -0.592 5.592 18 C -0.248 4.248 19 H 0.063 0.937 20 C 0.007 3.993 21 N -0.906 5.906 22 Si 0.903 3.097 23 H -0.287 1.287 24 H -0.291 1.291 25 H -0.279 1.279 26 C 0.171 3.829 27 C -0.154 4.154 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.132 0.868 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.133 0.867 39 H 0.400 0.600 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.044 0.956 43 H 0.015 0.985 44 H 0.054 0.946 45 H 0.253 0.747 46 H 0.011 0.989 47 H 0.103 0.897 48 H 0.041 0.959 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.307 6.089 -16.141 24.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.181 4.181 3 C -0.024 4.024 4 N -0.334 5.334 5 C 0.350 3.650 6 O -0.390 6.390 7 C -0.149 4.149 8 C -0.096 4.096 9 C -0.153 4.153 10 C -0.109 4.109 11 C -0.170 4.170 12 C 0.107 3.893 13 O -0.303 6.303 14 C 0.059 3.941 15 C -0.186 4.186 16 C 0.024 3.976 17 N -0.315 5.315 18 C -0.378 4.378 19 H 0.080 0.920 20 C -0.191 4.191 21 N -0.551 5.551 22 Si 0.733 3.267 23 H -0.214 1.214 24 H -0.217 1.217 25 H -0.205 1.205 26 C 0.045 3.955 27 C -0.194 4.194 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.149 0.851 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.150 0.850 39 H 0.259 0.741 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.063 0.937 43 H 0.033 0.967 44 H 0.073 0.927 45 H 0.064 0.936 46 H 0.029 0.971 47 H 0.120 0.880 48 H 0.060 0.940 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -17.062 5.589 -15.816 23.927 hybrid contribution 1.101 0.135 0.118 1.116 sum -15.961 5.724 -15.697 23.107 Atomic orbital electron populations 1.21686 0.95348 1.01857 1.01604 1.21939 0.95784 0.97278 1.03088 1.21866 0.80139 0.97264 1.03087 1.48228 1.06144 1.72246 1.06805 1.18005 0.87100 0.76987 0.82895 1.90803 1.13387 1.48661 1.86115 1.20549 1.01041 0.97386 0.95950 1.21173 0.94177 0.96007 0.98229 1.21077 1.00858 1.00309 0.93102 1.21147 0.97097 0.93841 0.98784 1.21412 0.99521 0.98894 0.97173 1.18435 0.93164 0.86396 0.91340 1.84690 1.23756 1.32308 1.89507 1.21142 0.93047 0.97310 0.82569 1.22438 0.99112 0.95172 1.01878 1.20845 0.94102 0.90350 0.92276 1.43984 1.05581 1.00287 1.81600 1.19165 0.83670 1.08162 1.26784 0.91973 1.25300 0.98153 0.97966 0.97695 1.69887 1.34810 1.09085 1.41300 0.86275 0.84943 0.76827 0.78681 1.21380 1.21718 1.20455 1.20952 0.94228 0.91249 0.89076 1.22692 0.99024 0.94120 1.03600 0.92603 0.92849 0.92546 0.91801 0.91246 0.90625 0.89959 0.85065 0.85304 0.85379 0.84951 0.74127 0.90653 0.90454 0.93729 0.96703 0.92704 0.93635 0.97139 0.87954 0.93984 0.90085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.91 37.16 0.37 -0.94 16 2 C -0.14 -1.65 6.26 -26.73 -0.17 -1.81 16 3 C 0.10 1.16 5.18 -4.04 -0.02 1.14 16 4 N -0.60 -9.32 2.42 -167.28 -0.41 -9.73 16 5 C 0.56 9.41 6.19 -12.47 -0.08 9.34 16 6 O -0.51 -10.60 13.07 3.11 0.04 -10.56 16 7 C -0.15 -1.93 4.91 -104.84 -0.51 -2.45 16 8 C -0.08 -0.79 7.47 -39.20 -0.29 -1.09 16 9 C -0.14 -1.09 10.02 -39.63 -0.40 -1.49 16 10 C -0.09 -0.71 10.03 -39.53 -0.40 -1.11 16 11 C -0.15 -1.45 9.98 -39.47 -0.39 -1.84 16 12 C 0.15 1.91 6.71 -38.70 -0.26 1.65 16 13 O -0.49 -6.59 12.73 -20.84 -0.27 -6.85 16 14 C 0.16 2.94 2.51 -67.89 -0.17 2.77 16 15 C -0.15 -2.83 5.27 -26.61 -0.14 -2.97 16 16 C 0.15 3.36 6.52 -3.71 -0.02 3.33 16 17 N -0.59 -15.66 3.00 -172.32 -0.52 -16.18 16 18 C -0.25 -7.13 9.56 -15.06 -0.14 -7.28 16 19 H 0.06 1.77 7.83 -52.49 -0.41 1.36 16 20 C 0.01 0.20 5.33 -17.43 -0.09 0.11 16 21 N -0.91 -26.89 10.58 55.49 0.59 -26.30 16 22 Si 0.90 22.40 29.56 -169.99 -5.02 17.38 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 26 C 0.17 4.35 5.27 -3.71 -0.02 4.33 16 27 C -0.15 -3.35 5.26 -26.61 -0.14 -3.49 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.08 0.79 8.03 -51.93 -0.42 0.37 16 34 H 0.08 0.83 4.43 -51.92 -0.23 0.60 16 35 H 0.13 1.20 7.59 -52.49 -0.40 0.80 16 36 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 37 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 38 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 39 H 0.40 4.18 9.06 45.56 0.41 4.59 16 40 H 0.08 1.31 7.86 -51.93 -0.41 0.90 16 41 H 0.08 1.71 6.41 -51.93 -0.33 1.37 16 42 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.05 1.19 7.93 -51.93 -0.41 0.78 16 45 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 46 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 47 H 0.10 2.94 5.89 -51.93 -0.31 2.64 16 48 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 49 H 0.08 1.98 6.03 -51.93 -0.31 1.67 16 LS Contribution 385.87 15.07 5.81 5.81 Total: -1.00 -33.84 385.87 -9.68 -43.51 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -7.02 Total: 4.70 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -2.88 Total: -1.79 kcal Atomic # 7 Polarization: -51.87 SS G_CDS: -0.34 Total: -52.21 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -0.22 Total: -17.41 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.84 -9.68 -43.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690132606.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.423 kcal (2) G-P(sol) polarization free energy of solvation -33.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds