Wall clock time and date at job start Tue Mar 31 2020 16:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46712 * 2 1 4 4 N 1.46502 * 109.46824 * 180.02562 * 3 2 1 5 5 C 1.34777 * 119.99907 * 94.95964 * 4 3 2 6 6 O 1.21590 * 119.99636 * 185.67255 * 5 4 3 7 7 C 1.47533 * 120.00399 * 5.66503 * 5 4 3 8 8 C 1.39711 * 120.18698 * 55.04246 * 7 5 4 9 9 C 1.37789 * 119.90399 * 179.97438 * 8 7 5 10 10 C 1.38548 * 120.30475 * 0.02562 * 9 8 7 11 11 C 1.38064 * 120.38874 * 359.97438 * 10 9 8 12 12 C 1.38708 * 120.08092 * 0.02562 * 11 10 9 13 13 O 1.35655 * 120.14898 * 180.02562 * 12 11 10 14 14 C 1.46493 * 119.99987 * 274.95706 * 4 3 2 15 15 C 1.53044 * 109.46271 * 240.07180 * 14 4 3 16 16 C 1.53190 * 109.31597 * 178.61206 * 15 14 4 17 17 N 1.46931 * 108.77437 * 54.63484 * 16 15 14 18 18 C 1.36929 * 120.63002 * 126.41127 * 17 16 15 19 19 H 1.07991 * 120.00546 * 324.78954 * 18 17 16 20 20 C 1.38822 * 119.99576 * 144.78830 * 18 17 16 21 21 N 1.31618 * 120.00150 * 4.62019 * 20 18 17 22 22 Si 1.86805 * 119.99747 * 184.61760 * 20 18 17 23 23 H 1.48501 * 109.46921 * 89.99845 * 22 20 18 24 24 H 1.48495 * 109.47101 * 210.00071 * 22 20 18 25 25 H 1.48503 * 109.47160 * 330.00117 * 22 20 18 26 26 C 1.46927 * 118.73628 * 306.39178 * 17 16 15 27 27 C 1.53034 * 109.46365 * 119.99970 * 14 4 3 28 28 H 1.08996 * 109.47221 * 299.99998 * 1 2 3 29 29 H 1.08998 * 109.46949 * 60.00308 * 1 2 3 30 30 H 1.09000 * 109.47061 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47221 * 240.00002 * 2 1 3 32 32 H 1.08995 * 109.47019 * 119.99171 * 2 1 3 33 33 H 1.08992 * 109.47343 * 59.99545 * 3 2 1 34 34 H 1.09007 * 109.46971 * 299.99578 * 3 2 1 35 35 H 1.07996 * 120.04800 * 0.25583 * 8 7 5 36 36 H 1.07996 * 119.84913 * 179.97438 * 9 8 7 37 37 H 1.07991 * 119.80963 * 179.97438 * 10 9 8 38 38 H 1.07994 * 119.95642 * 180.02562 * 11 10 9 39 39 H 0.96692 * 114.00490 * 89.99941 * 13 12 11 40 40 H 1.09003 * 109.46288 * 0.02772 * 14 4 3 41 41 H 1.09007 * 109.49305 * 298.56719 * 15 14 4 42 42 H 1.09002 * 109.49938 * 58.65840 * 15 14 4 43 43 H 1.08998 * 109.58633 * 294.84624 * 16 15 14 44 44 H 1.09001 * 109.70472 * 174.48576 * 16 15 14 45 45 H 0.96995 * 120.00023 * 179.97438 * 21 20 18 46 46 H 1.08998 * 109.58395 * 293.81957 * 26 17 16 47 47 H 1.09003 * 109.70042 * 173.46832 * 26 17 16 48 48 H 1.09002 * 109.50038 * 301.33879 * 27 14 4 49 49 H 1.09004 * 109.49990 * 61.40217 * 27 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1783 1.5437 -1.1637 6 8 5.3897 1.4402 -1.1758 7 6 3.4456 1.7797 -2.4223 8 6 2.5837 2.8731 -2.5390 9 6 1.9027 3.0883 -3.7173 10 6 2.0680 2.2247 -4.7881 11 6 2.9165 1.1404 -4.6863 12 6 3.6101 0.9086 -3.5076 13 8 4.4446 -0.1561 -3.4063 14 6 4.2379 1.3328 1.2630 15 6 5.1164 2.5716 1.4522 16 6 5.8548 2.4696 2.7905 17 7 6.5890 1.1975 2.8297 18 6 7.9306 1.1744 3.1027 19 1 8.5672 1.9725 2.7506 20 6 8.4725 0.1249 3.8322 21 7 7.7151 -0.8926 4.1833 22 14 10.2767 0.1570 4.3154 23 1 10.4240 0.8228 5.6346 24 1 10.7906 -1.2335 4.4025 25 1 11.0497 0.9073 3.2933 26 6 5.8562 -0.0494 2.5709 27 6 5.1177 0.0809 1.2350 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 1.6765 1.9564 0.8899 34 1 1.6766 1.9564 -0.8901 35 1 2.4549 3.5512 -1.7084 36 1 1.2363 3.9335 -3.8064 37 1 1.5299 2.4007 -5.7077 38 1 3.0405 0.4720 -5.5254 39 1 5.3551 0.0310 -3.6727 40 1 3.5298 1.2606 2.0885 41 1 5.8413 2.6310 0.6402 42 1 4.4916 3.4648 1.4486 43 1 5.1350 2.5014 3.6084 44 1 6.5555 3.2989 2.8879 45 1 8.0938 -1.6260 4.6927 46 1 5.1365 -0.2230 3.3708 47 1 6.5561 -0.8836 2.5217 48 1 4.4938 -0.7988 1.0769 49 1 5.8422 0.1634 0.4248 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690132606.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:42 Heat of formation + Delta-G solvation = -48.572869 kcal Electronic energy + Delta-G solvation = -30085.978689 eV Core-core repulsion = 26205.989162 eV Total energy + Delta-G solvation = -3879.989528 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.83061 -40.17550 -38.48978 -37.77799 -37.06915 -34.96332 -33.50457 -32.59507 -31.62843 -31.07983 -30.65564 -27.38619 -26.86638 -24.94831 -23.93759 -23.72207 -23.25430 -22.58343 -21.26532 -20.38488 -19.19287 -18.92237 -17.98014 -17.39548 -16.87537 -16.82486 -16.65972 -15.94834 -15.70301 -15.52544 -15.45760 -15.27636 -15.07557 -14.82620 -14.63671 -14.33876 -14.20205 -13.95503 -13.34827 -13.30899 -13.24278 -13.06266 -12.89456 -12.78576 -12.68317 -12.61969 -12.59165 -12.27272 -12.16570 -11.97255 -11.83118 -11.71318 -11.64925 -11.42335 -11.27246 -10.64467 -10.49707 -9.95427 -9.66379 -9.54832 -8.57379 -7.87331 -5.43697 -0.02646 0.27098 1.43875 1.45314 1.54654 1.66881 2.00808 2.48301 2.64244 3.24717 3.26300 3.42135 3.69004 3.90502 3.93395 3.98697 4.01834 4.14202 4.17336 4.32746 4.37120 4.41330 4.45204 4.51103 4.54904 4.66088 4.68180 4.72527 4.83414 4.86470 4.90772 4.93794 4.96967 5.06605 5.14134 5.18959 5.22675 5.30597 5.33585 5.40245 5.42514 5.45508 5.57108 5.62261 5.69200 5.81850 5.82755 6.44768 6.47446 6.67854 7.16084 7.19987 7.84030 8.37932 9.16107 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.016792 B = 0.003341 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.025149 B = 8379.254232 C = 8955.948066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.139 4.139 3 C 0.097 3.903 4 N -0.600 5.600 5 C 0.558 3.442 6 O -0.567 6.567 7 C -0.171 4.171 8 C -0.080 4.080 9 C -0.123 4.123 10 C -0.078 4.078 11 C -0.153 4.153 12 C 0.125 3.875 13 O -0.514 6.514 14 C 0.169 3.831 15 C -0.131 4.131 16 C 0.148 3.852 17 N -0.612 5.612 18 C -0.268 4.268 19 H 0.058 0.942 20 C -0.045 4.045 21 N -0.932 5.932 22 Si 0.971 3.029 23 H -0.279 1.279 24 H -0.291 1.291 25 H -0.273 1.273 26 C 0.182 3.818 27 C -0.138 4.138 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.041 0.959 32 H 0.049 0.951 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.144 0.856 36 H 0.166 0.834 37 H 0.166 0.834 38 H 0.148 0.852 39 H 0.405 0.595 40 H 0.093 0.907 41 H 0.047 0.953 42 H 0.081 0.919 43 H 0.028 0.972 44 H 0.054 0.946 45 H 0.251 0.749 46 H 0.001 0.999 47 H 0.062 0.938 48 H 0.046 0.954 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.275 8.364 -17.643 28.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.178 4.178 3 C -0.024 4.024 4 N -0.330 5.330 5 C 0.347 3.653 6 O -0.446 6.446 7 C -0.175 4.175 8 C -0.098 4.098 9 C -0.141 4.141 10 C -0.095 4.095 11 C -0.171 4.171 12 C 0.080 3.920 13 O -0.326 6.326 14 C 0.067 3.933 15 C -0.171 4.171 16 C 0.022 3.978 17 N -0.336 5.336 18 C -0.398 4.398 19 H 0.076 0.924 20 C -0.240 4.240 21 N -0.578 5.578 22 Si 0.798 3.202 23 H -0.205 1.205 24 H -0.217 1.217 25 H -0.198 1.198 26 C 0.055 3.945 27 C -0.178 4.178 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.116 0.884 34 H 0.122 0.878 35 H 0.161 0.839 36 H 0.184 0.816 37 H 0.183 0.817 38 H 0.166 0.834 39 H 0.264 0.736 40 H 0.111 0.889 41 H 0.065 0.935 42 H 0.099 0.901 43 H 0.046 0.954 44 H 0.072 0.928 45 H 0.060 0.940 46 H 0.019 0.981 47 H 0.081 0.919 48 H 0.064 0.936 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -20.086 7.890 -17.332 27.678 hybrid contribution 1.964 -0.558 0.481 2.097 sum -18.122 7.332 -16.851 25.810 Atomic orbital electron populations 1.21639 0.92749 1.02412 1.02967 1.21885 0.97971 0.96864 1.01052 1.22163 0.77412 0.97667 1.05204 1.48186 1.07736 1.71666 1.05437 1.18658 0.86726 0.75655 0.84222 1.90774 1.15846 1.50986 1.86994 1.20387 1.03020 0.99665 0.94422 1.21366 0.93691 0.94930 0.99844 1.21503 0.99963 1.00864 0.91770 1.21627 0.95594 0.92251 1.00077 1.21636 0.99246 0.99876 0.96364 1.18791 0.94020 0.86656 0.92536 1.84654 1.24482 1.33588 1.89909 1.20833 0.92963 0.94798 0.84742 1.22225 0.98785 0.97160 0.98891 1.20993 0.94241 0.88332 0.94189 1.44223 1.05411 1.01843 1.82102 1.19435 0.85100 1.08235 1.27006 0.92427 1.26061 1.02566 0.97570 0.97837 1.70082 1.36509 1.09448 1.41764 0.85222 0.79805 0.76670 0.78460 1.20504 1.21707 1.19827 1.20639 0.93206 0.90103 0.90525 1.22387 0.98704 0.96579 1.00089 0.91282 0.91360 0.92496 0.94007 0.93201 0.88448 0.87752 0.83867 0.81626 0.81681 0.83444 0.73602 0.88908 0.93455 0.90097 0.95384 0.92782 0.93957 0.98093 0.91930 0.93576 0.93250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.91 71.98 0.71 -1.40 16 2 C -0.14 -3.07 6.26 30.60 0.19 -2.88 16 3 C 0.10 2.05 5.18 86.38 0.45 2.50 16 4 N -0.60 -18.32 2.42 -801.42 -1.94 -20.26 16 5 C 0.56 19.07 6.19 86.69 0.54 19.61 16 6 O -0.57 -24.83 13.07 -1.92 -0.03 -24.86 16 7 C -0.17 -4.44 4.91 -20.01 -0.10 -4.54 16 8 C -0.08 -1.40 7.47 22.52 0.17 -1.24 16 9 C -0.12 -1.40 10.02 22.24 0.22 -1.18 16 10 C -0.08 -0.87 10.03 22.30 0.22 -0.65 16 11 C -0.15 -2.59 9.98 22.34 0.22 -2.36 16 12 C 0.13 3.12 6.71 22.84 0.15 3.28 16 13 O -0.51 -14.69 12.73 -87.63 -1.12 -15.80 16 14 C 0.17 6.22 2.51 45.02 0.11 6.33 16 15 C -0.13 -5.04 5.27 30.67 0.16 -4.88 16 16 C 0.15 6.62 6.52 86.36 0.56 7.18 16 17 N -0.61 -33.60 3.00 -699.09 -2.10 -35.70 16 18 C -0.27 -15.93 9.56 84.04 0.80 -15.13 16 19 H 0.06 3.40 7.83 -2.91 -0.02 3.38 16 20 C -0.05 -2.66 5.33 84.86 0.45 -2.21 16 21 N -0.93 -57.43 10.58 21.65 0.23 -57.20 16 22 Si 0.97 47.25 29.56 68.60 2.03 49.28 16 23 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 24 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 25 H -0.27 -12.90 7.11 99.48 0.71 -12.20 16 26 C 0.18 9.72 5.27 86.36 0.45 10.17 16 27 C -0.14 -6.28 5.26 30.67 0.16 -6.12 16 28 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.07 0.84 8.14 -2.39 -0.02 0.83 16 30 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.10 1.68 8.03 -2.39 -0.02 1.66 16 34 H 0.10 1.79 4.43 -2.38 -0.01 1.78 16 35 H 0.14 2.11 7.59 -2.91 -0.02 2.09 16 36 H 0.17 0.73 8.06 -2.91 -0.02 0.70 16 37 H 0.17 0.69 8.06 -2.92 -0.02 0.67 16 38 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 39 H 0.41 9.55 9.06 -74.06 -0.67 8.88 16 40 H 0.09 3.11 7.86 -2.39 -0.02 3.09 16 41 H 0.05 2.14 6.41 -2.38 -0.02 2.13 16 42 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 43 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.05 2.37 7.93 -2.39 -0.02 2.35 16 45 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 46 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 47 H 0.06 3.84 5.89 -2.39 -0.01 3.82 16 48 H 0.05 2.00 8.14 -2.39 -0.02 1.99 16 49 H 0.05 2.59 6.03 -2.39 -0.01 2.57 16 Total: -1.00 -79.15 385.87 2.84 -76.30 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: 0.28 Total: 21.77 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: 5.49 Total: 6.47 kcal Atomic # 7 Polarization: -109.35 SS G_CDS: -3.81 Total: -113.16 kcal Atomic # 8 Polarization: -39.52 SS G_CDS: -1.14 Total: -40.66 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 2.03 Total: 49.28 kcal Total: -79.15 2.84 -76.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690132606.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.730 kcal (2) G-P(sol) polarization free energy of solvation -79.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds