Wall clock time and date at job start Tue Mar 31 2020 16:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46637 * 2 1 4 4 N 1.46497 * 109.47027 * 119.99579 * 2 1 3 5 5 C 1.36935 * 119.99612 * 113.75354 * 4 2 1 6 6 H 1.08005 * 120.00070 * 207.19973 * 5 4 2 7 7 C 1.38814 * 120.00159 * 27.20187 * 5 4 2 8 8 N 1.31613 * 120.00067 * 214.55226 * 7 5 4 9 9 Si 1.86803 * 119.99814 * 34.55537 * 7 5 4 10 10 H 1.48503 * 109.46874 * 270.00091 * 9 7 5 11 11 H 1.48499 * 109.47251 * 150.00346 * 9 7 5 12 12 H 1.48497 * 109.47251 * 29.99845 * 9 7 5 13 13 C 1.46494 * 120.00486 * 293.75621 * 4 2 1 14 14 C 1.53008 * 109.47020 * 270.00065 * 13 4 2 15 15 C 1.53001 * 109.46978 * 179.97438 * 14 13 4 16 16 N 1.46502 * 109.46773 * 179.97438 * 15 14 13 17 17 C 1.34781 * 119.99856 * 180.02562 * 16 15 14 18 18 O 1.21283 * 120.00022 * 359.97438 * 17 16 15 19 19 C 1.50699 * 119.99874 * 180.02562 * 17 16 15 20 20 H 1.09003 * 110.83727 * 62.26583 * 19 17 16 21 21 C 1.54705 * 110.94292 * 298.54528 * 19 17 16 22 22 O 1.43761 * 102.79801 * 216.48856 * 21 19 17 23 23 C 1.36136 * 109.28546 * 27.55212 * 22 21 19 24 24 C 1.39283 * 129.87924 * 161.45428 * 23 22 21 25 25 C 1.37934 * 120.24403 * 179.55100 * 24 23 22 26 26 C 1.38285 * 120.35158 * 0.02562 * 25 24 23 27 27 C 1.38355 * 119.76306 * 0.19651 * 26 25 24 28 28 C 1.37738 * 119.97775 * 359.97246 * 27 26 25 29 29 H 1.09000 * 109.47632 * 299.99896 * 1 2 3 30 30 H 1.08997 * 109.47362 * 60.00421 * 1 2 3 31 31 H 1.09005 * 109.47121 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47123 * 240.00054 * 2 1 3 33 33 H 1.09005 * 109.46957 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47501 * 300.00306 * 3 2 1 35 35 H 1.08998 * 109.47320 * 60.00175 * 3 2 1 36 36 H 0.97000 * 120.00479 * 354.86518 * 8 7 5 37 37 H 1.09001 * 109.47568 * 29.99434 * 13 4 2 38 38 H 1.08997 * 109.47661 * 150.00019 * 13 4 2 39 39 H 1.08998 * 109.46698 * 299.99604 * 14 13 4 40 40 H 1.08997 * 109.46941 * 59.99513 * 14 13 4 41 41 H 1.08998 * 109.47219 * 299.99452 * 15 14 13 42 42 H 1.08993 * 109.47054 * 60.00011 * 15 14 13 43 43 H 0.97002 * 120.00355 * 359.97438 * 16 15 14 44 44 H 1.09005 * 110.75311 * 334.81693 * 21 19 17 45 45 H 1.09002 * 110.75024 * 98.16354 * 21 19 17 46 46 H 1.08000 * 119.87729 * 359.57074 * 24 23 22 47 47 H 1.07994 * 119.82388 * 180.02562 * 25 24 23 48 48 H 1.07994 * 120.11922 * 180.18281 * 26 25 24 49 49 H 1.07996 * 120.00984 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.6969 -1.8737 1.0746 6 1 2.6777 -2.5925 1.8805 7 6 3.4094 -2.1493 -0.0844 8 7 3.4808 -3.3837 -0.5351 9 14 4.2670 -0.7680 -1.0042 10 1 3.3381 -0.1909 -2.0089 11 1 5.4695 -1.3030 -1.6918 12 1 4.6750 0.2881 -0.0433 13 6 1.7807 -0.1154 2.5224 14 6 2.9428 0.8082 2.8935 15 6 2.6942 1.4094 4.2783 16 7 3.8072 2.2932 4.6338 17 6 3.8049 2.9369 5.8180 18 8 2.8811 2.7848 6.5890 19 6 4.9495 3.8464 6.1834 20 1 5.0213 4.6795 5.4841 21 6 6.2811 3.0614 6.2469 22 8 6.9686 3.6886 7.3427 23 6 6.0551 4.2026 8.2115 24 6 6.2039 4.5801 9.5439 25 6 5.1323 5.0934 10.2444 26 6 3.9011 5.2374 9.6313 27 6 3.7438 4.8605 8.3094 28 6 4.8118 4.3444 7.6091 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1299 1.4426 0.0005 34 1 1.6765 1.9564 -0.8899 35 1 1.6766 1.9564 0.8900 36 1 3.0995 -4.1113 -0.0192 37 1 0.8524 0.4559 2.5097 38 1 1.7042 -0.9164 3.2575 39 1 3.8710 0.2369 2.9062 40 1 3.0192 1.6093 2.1583 41 1 1.7661 1.9807 4.2651 42 1 2.6176 0.6085 5.0136 43 1 4.5462 2.4146 4.0173 44 1 6.0986 2.0077 6.4580 45 1 6.8432 3.1790 5.3204 46 1 7.1620 4.4708 10.0303 47 1 5.2553 5.3843 11.2771 48 1 3.0654 5.6424 10.1824 49 1 2.7843 4.9716 7.8266 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691766884.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:35 Heat of formation + Delta-G solvation = -20.212033 kcal Electronic energy + Delta-G solvation = -28416.619123 eV Core-core repulsion = 24537.859414 eV Total energy + Delta-G solvation = -3878.759710 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.68981 -39.38615 -37.66119 -37.36110 -35.22272 -33.21842 -32.28209 -31.95426 -30.34070 -29.88405 -29.11986 -26.60896 -25.69992 -24.22679 -22.99569 -22.51086 -22.07245 -21.26459 -20.37037 -19.40360 -17.80109 -17.56868 -17.35884 -16.94688 -16.02308 -15.82327 -15.69577 -15.34545 -15.24095 -14.57407 -14.22919 -13.99861 -13.71702 -13.57539 -13.40810 -13.30993 -13.13916 -12.90563 -12.71275 -12.43046 -12.16876 -12.01675 -11.91706 -11.79334 -11.45408 -11.36921 -11.24518 -11.06580 -10.89961 -10.84436 -10.50230 -10.04280 -9.99755 -9.74585 -9.65205 -9.24729 -9.16078 -9.09258 -8.43840 -8.32355 -7.16071 -6.32787 -3.28465 1.01073 1.15873 2.41128 2.87181 3.03709 3.36477 3.45486 3.54105 3.63057 3.88284 4.19096 4.50232 4.52809 4.58620 4.76601 4.83479 4.85590 5.03671 5.12683 5.16236 5.20086 5.22369 5.36437 5.40490 5.54525 5.67578 5.73807 5.76086 5.89256 5.97719 6.04729 6.07275 6.12094 6.17391 6.17740 6.26385 6.26424 6.32590 6.38330 6.42271 6.45122 6.57827 6.68023 6.84598 6.88669 6.96963 7.05078 7.37669 8.04901 8.07054 8.43868 9.03542 9.64559 10.20676 11.03012 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.020372 B = 0.002376 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.108985 B =11781.862035 C =12406.053893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.150 3.850 3 C -0.176 4.176 4 N -0.593 5.593 5 C -0.358 4.358 6 H 0.064 0.936 7 C -0.008 4.008 8 N -0.903 5.903 9 Si 1.048 2.952 10 H -0.291 1.291 11 H -0.301 1.301 12 H -0.284 1.284 13 C 0.154 3.846 14 C -0.160 4.160 15 C 0.120 3.880 16 N -0.724 5.724 17 C 0.520 3.480 18 O -0.529 6.529 19 C -0.103 4.103 20 H 0.123 0.877 21 C 0.063 3.937 22 O -0.300 6.300 23 C 0.106 3.894 24 C -0.143 4.143 25 C -0.083 4.083 26 C -0.153 4.153 27 C -0.040 4.040 28 C -0.155 4.155 29 H 0.043 0.957 30 H 0.042 0.958 31 H 0.054 0.946 32 H 0.080 0.920 33 H 0.056 0.944 34 H 0.047 0.953 35 H 0.053 0.947 36 H 0.266 0.734 37 H 0.041 0.959 38 H 0.048 0.952 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.401 0.599 44 H 0.084 0.916 45 H 0.117 0.883 46 H 0.128 0.872 47 H 0.131 0.869 48 H 0.128 0.872 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.151 18.522 14.871 23.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.044 3.956 3 C -0.235 4.235 4 N -0.314 5.314 5 C -0.487 4.487 6 H 0.081 0.919 7 C -0.211 4.211 8 N -0.541 5.541 9 Si 0.880 3.120 10 H -0.219 1.219 11 H -0.228 1.228 12 H -0.210 1.210 13 C 0.027 3.973 14 C -0.201 4.201 15 C -0.004 4.004 16 N -0.375 5.375 17 C 0.305 3.695 18 O -0.404 6.404 19 C -0.124 4.124 20 H 0.141 0.859 21 C -0.013 4.013 22 O -0.214 6.214 23 C 0.061 3.939 24 C -0.162 4.162 25 C -0.101 4.101 26 C -0.171 4.171 27 C -0.058 4.058 28 C -0.156 4.156 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.059 0.941 38 H 0.066 0.934 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.235 0.765 44 H 0.102 0.898 45 H 0.135 0.865 46 H 0.146 0.854 47 H 0.149 0.851 48 H 0.146 0.854 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.579 18.665 14.063 23.643 hybrid contribution -0.538 -0.267 0.884 1.069 sum 3.041 18.398 14.948 23.899 Atomic orbital electron populations 1.22237 0.98442 1.01303 0.99698 1.20686 0.92200 0.91309 0.91420 1.22615 1.01583 0.98690 1.00584 1.44251 1.63707 1.24092 0.99351 1.20027 1.29175 0.93078 1.06410 0.91862 1.26070 0.97248 1.01163 0.96662 1.70923 1.47945 1.00644 1.34555 0.84121 0.76892 0.75490 0.75526 1.21884 1.22844 1.21048 1.20701 0.93738 0.94363 0.88546 1.22769 1.03441 1.00476 0.93376 1.21523 0.88530 0.92560 0.97754 1.46182 1.25365 1.47244 1.18717 1.20039 0.87200 0.80603 0.81689 1.90715 1.36486 1.63376 1.49866 1.21580 0.95130 0.99080 0.96594 0.85943 1.23843 0.90135 0.97097 0.90178 1.86840 1.31077 1.70535 1.32921 1.19566 0.87909 0.95358 0.91081 1.20221 1.00532 1.05151 0.90300 1.20894 0.92176 0.97379 0.99614 1.21076 0.97788 1.03305 0.94942 1.20388 0.97488 0.94205 0.93691 1.20194 0.95095 1.06243 0.94046 0.93744 0.93911 0.92712 0.90250 0.92512 0.93400 0.92809 0.92364 0.94063 0.93408 0.91140 0.91495 0.91808 0.91649 0.76538 0.89781 0.86482 0.85407 0.85146 0.85408 0.85383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.84 9.27 37.16 0.34 -2.50 16 2 C 0.15 3.11 2.19 -67.93 -0.15 2.96 16 3 C -0.18 -3.07 7.32 37.16 0.27 -2.80 16 4 N -0.59 -13.26 2.16 -165.66 -0.36 -13.62 16 5 C -0.36 -9.58 9.74 -15.06 -0.15 -9.73 16 6 H 0.06 1.83 8.06 -52.48 -0.42 1.41 16 7 C -0.01 -0.21 4.93 -17.43 -0.09 -0.30 16 8 N -0.90 -27.07 13.70 55.49 0.76 -26.31 16 9 Si 1.05 25.01 24.18 -169.99 -4.11 20.90 16 10 H -0.29 -6.59 6.48 56.52 0.37 -6.23 16 11 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 12 H -0.28 -6.26 6.24 56.52 0.35 -5.91 16 13 C 0.15 2.85 4.93 -4.04 -0.02 2.83 16 14 C -0.16 -2.52 5.35 -26.73 -0.14 -2.66 16 15 C 0.12 1.63 5.67 -4.04 -0.02 1.61 16 16 N -0.72 -8.33 5.50 -60.29 -0.33 -8.66 16 17 C 0.52 6.50 7.08 -10.98 -0.08 6.42 16 18 O -0.53 -8.52 15.01 5.56 0.08 -8.44 16 19 C -0.10 -1.03 3.52 -91.56 -0.32 -1.35 16 20 H 0.12 0.96 8.14 -51.93 -0.42 0.54 16 21 C 0.06 0.57 7.50 38.05 0.29 0.85 16 22 O -0.30 -3.39 11.10 -20.17 -0.22 -3.61 16 23 C 0.11 1.22 7.04 -38.95 -0.27 0.95 16 24 C -0.14 -1.42 10.06 -39.30 -0.40 -1.81 16 25 C -0.08 -0.71 10.02 -39.68 -0.40 -1.11 16 26 C -0.15 -1.43 10.07 -39.52 -0.40 -1.83 16 27 C -0.04 -0.45 9.05 -39.72 -0.36 -0.80 16 28 C -0.15 -1.80 5.44 -104.10 -0.57 -2.37 16 29 H 0.04 0.73 6.93 -51.93 -0.36 0.37 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.08 1.87 4.24 -51.93 -0.22 1.65 16 33 H 0.06 1.04 5.12 -51.93 -0.27 0.78 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.05 0.84 6.39 -51.93 -0.33 0.51 16 36 H 0.27 7.94 8.73 -40.82 -0.36 7.58 16 37 H 0.04 0.70 6.72 -51.93 -0.35 0.35 16 38 H 0.05 0.92 8.04 -51.93 -0.42 0.50 16 39 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.07 1.03 5.40 -51.93 -0.28 0.75 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.40 3.67 8.47 -40.82 -0.35 3.32 16 44 H 0.08 0.79 7.91 -51.93 -0.41 0.38 16 45 H 0.12 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 47 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 48 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 49 H 0.13 1.44 7.64 -52.49 -0.40 1.04 16 LS Contribution 383.62 15.07 5.78 5.78 Total: -1.00 -32.32 383.62 -8.55 -40.87 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -7.69 Total: 4.71 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: -2.46 Total: -11.63 kcal Atomic # 7 Polarization: -48.66 SS G_CDS: 0.07 Total: -48.59 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: -0.14 Total: -12.05 kcal Atomic # 14 Polarization: 25.01 SS G_CDS: -4.11 Total: 20.90 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.32 -8.55 -40.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691766884.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.660 kcal (2) G-P(sol) polarization free energy of solvation -32.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds