Wall clock time and date at job start Tue Mar 31 2020 16:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46637 * 2 1 4 4 N 1.46497 * 109.47027 * 119.99579 * 2 1 3 5 5 C 1.36935 * 119.99612 * 113.75354 * 4 2 1 6 6 H 1.08005 * 120.00070 * 207.19973 * 5 4 2 7 7 C 1.38814 * 120.00159 * 27.20187 * 5 4 2 8 8 N 1.31613 * 120.00067 * 214.55226 * 7 5 4 9 9 Si 1.86803 * 119.99814 * 34.55537 * 7 5 4 10 10 H 1.48503 * 109.46874 * 270.00091 * 9 7 5 11 11 H 1.48499 * 109.47251 * 150.00346 * 9 7 5 12 12 H 1.48497 * 109.47251 * 29.99845 * 9 7 5 13 13 C 1.46494 * 120.00486 * 293.75621 * 4 2 1 14 14 C 1.53008 * 109.47020 * 270.00065 * 13 4 2 15 15 C 1.53001 * 109.46978 * 179.97438 * 14 13 4 16 16 N 1.46502 * 109.46773 * 179.97438 * 15 14 13 17 17 C 1.34781 * 119.99856 * 180.02562 * 16 15 14 18 18 O 1.21283 * 120.00022 * 359.97438 * 17 16 15 19 19 C 1.50699 * 119.99874 * 180.02562 * 17 16 15 20 20 H 1.09003 * 110.83727 * 62.26583 * 19 17 16 21 21 C 1.54705 * 110.94292 * 298.54528 * 19 17 16 22 22 O 1.43761 * 102.79801 * 216.48856 * 21 19 17 23 23 C 1.36136 * 109.28546 * 27.55212 * 22 21 19 24 24 C 1.39283 * 129.87924 * 161.45428 * 23 22 21 25 25 C 1.37934 * 120.24403 * 179.55100 * 24 23 22 26 26 C 1.38285 * 120.35158 * 0.02562 * 25 24 23 27 27 C 1.38355 * 119.76306 * 0.19651 * 26 25 24 28 28 C 1.37738 * 119.97775 * 359.97246 * 27 26 25 29 29 H 1.09000 * 109.47632 * 299.99896 * 1 2 3 30 30 H 1.08997 * 109.47362 * 60.00421 * 1 2 3 31 31 H 1.09005 * 109.47121 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47123 * 240.00054 * 2 1 3 33 33 H 1.09005 * 109.46957 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47501 * 300.00306 * 3 2 1 35 35 H 1.08998 * 109.47320 * 60.00175 * 3 2 1 36 36 H 0.97000 * 120.00479 * 354.86518 * 8 7 5 37 37 H 1.09001 * 109.47568 * 29.99434 * 13 4 2 38 38 H 1.08997 * 109.47661 * 150.00019 * 13 4 2 39 39 H 1.08998 * 109.46698 * 299.99604 * 14 13 4 40 40 H 1.08997 * 109.46941 * 59.99513 * 14 13 4 41 41 H 1.08998 * 109.47219 * 299.99452 * 15 14 13 42 42 H 1.08993 * 109.47054 * 60.00011 * 15 14 13 43 43 H 0.97002 * 120.00355 * 359.97438 * 16 15 14 44 44 H 1.09005 * 110.75311 * 334.81693 * 21 19 17 45 45 H 1.09002 * 110.75024 * 98.16354 * 21 19 17 46 46 H 1.08000 * 119.87729 * 359.57074 * 24 23 22 47 47 H 1.07994 * 119.82388 * 180.02562 * 25 24 23 48 48 H 1.07994 * 120.11922 * 180.18281 * 26 25 24 49 49 H 1.07996 * 120.00984 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.6969 -1.8737 1.0746 6 1 2.6777 -2.5925 1.8805 7 6 3.4094 -2.1493 -0.0844 8 7 3.4808 -3.3837 -0.5351 9 14 4.2670 -0.7680 -1.0042 10 1 3.3381 -0.1909 -2.0089 11 1 5.4695 -1.3030 -1.6918 12 1 4.6750 0.2881 -0.0433 13 6 1.7807 -0.1154 2.5224 14 6 2.9428 0.8082 2.8935 15 6 2.6942 1.4094 4.2783 16 7 3.8072 2.2932 4.6338 17 6 3.8049 2.9369 5.8180 18 8 2.8811 2.7848 6.5890 19 6 4.9495 3.8464 6.1834 20 1 5.0213 4.6795 5.4841 21 6 6.2811 3.0614 6.2469 22 8 6.9686 3.6886 7.3427 23 6 6.0551 4.2026 8.2115 24 6 6.2039 4.5801 9.5439 25 6 5.1323 5.0934 10.2444 26 6 3.9011 5.2374 9.6313 27 6 3.7438 4.8605 8.3094 28 6 4.8118 4.3444 7.6091 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1299 1.4426 0.0005 34 1 1.6765 1.9564 -0.8899 35 1 1.6766 1.9564 0.8900 36 1 3.0995 -4.1113 -0.0192 37 1 0.8524 0.4559 2.5097 38 1 1.7042 -0.9164 3.2575 39 1 3.8710 0.2369 2.9062 40 1 3.0192 1.6093 2.1583 41 1 1.7661 1.9807 4.2651 42 1 2.6176 0.6085 5.0136 43 1 4.5462 2.4146 4.0173 44 1 6.0986 2.0077 6.4580 45 1 6.8432 3.1790 5.3204 46 1 7.1620 4.4708 10.0303 47 1 5.2553 5.3843 11.2771 48 1 3.0654 5.6424 10.1824 49 1 2.7843 4.9716 7.8266 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691766884.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:34 Heat of formation + Delta-G solvation = -41.389608 kcal Electronic energy + Delta-G solvation = -28417.537452 eV Core-core repulsion = 24537.859414 eV Total energy + Delta-G solvation = -3879.678038 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.47299 -40.38873 -38.96860 -38.38448 -36.41410 -34.31276 -34.07745 -33.21271 -31.31027 -30.98976 -30.17226 -28.00440 -27.11808 -25.18770 -24.31987 -23.55615 -22.97801 -22.54401 -21.54892 -20.94301 -19.23456 -18.55934 -18.43377 -17.73586 -17.33273 -16.92870 -16.63086 -16.50306 -16.20379 -16.04248 -15.32032 -15.31059 -14.93686 -14.86708 -14.53227 -14.39259 -14.30268 -14.10408 -13.78750 -13.66622 -13.39499 -13.30973 -13.02211 -12.91784 -12.83255 -12.63435 -12.54518 -12.35464 -12.05670 -11.95344 -11.79215 -11.60504 -11.47127 -11.36264 -11.08832 -11.00266 -10.37839 -10.17019 -9.88684 -9.19727 -9.11526 -8.46361 -5.39844 0.27089 0.39646 1.45249 1.45313 1.56408 1.75256 2.02206 2.22427 2.56671 2.78285 3.01994 3.11676 3.41630 3.46898 3.71394 3.87264 4.03139 4.09196 4.16211 4.20674 4.24271 4.38774 4.42848 4.45600 4.49536 4.52659 4.54053 4.61335 4.62079 4.67282 4.79776 4.86376 4.90298 4.94021 5.03669 5.04396 5.17256 5.28449 5.31382 5.33829 5.38221 5.43927 5.53087 5.54576 5.57710 5.61024 5.89236 6.15093 6.32462 6.45456 6.99628 7.11529 7.72790 8.17990 8.84462 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.020372 B = 0.002376 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.108985 B =11781.862035 C =12406.053893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.138 3.862 3 C -0.169 4.169 4 N -0.605 5.605 5 C -0.340 4.340 6 H 0.023 0.977 7 C -0.063 4.063 8 N -0.944 5.944 9 Si 1.090 2.910 10 H -0.270 1.270 11 H -0.315 1.315 12 H -0.252 1.252 13 C 0.151 3.849 14 C -0.142 4.142 15 C 0.132 3.868 16 N -0.714 5.714 17 C 0.523 3.477 18 O -0.568 6.568 19 C -0.095 4.095 20 H 0.148 0.852 21 C 0.062 3.938 22 O -0.312 6.312 23 C 0.083 3.917 24 C -0.152 4.152 25 C -0.079 4.079 26 C -0.156 4.156 27 C -0.060 4.060 28 C -0.176 4.176 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.028 0.972 32 H 0.048 0.952 33 H 0.049 0.951 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.248 0.752 37 H 0.065 0.935 38 H 0.029 0.971 39 H 0.052 0.948 40 H 0.081 0.919 41 H 0.069 0.931 42 H 0.050 0.950 43 H 0.415 0.585 44 H 0.074 0.926 45 H 0.152 0.848 46 H 0.143 0.857 47 H 0.163 0.837 48 H 0.150 0.850 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.416 22.294 15.268 27.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.033 3.967 3 C -0.228 4.228 4 N -0.328 5.328 5 C -0.470 4.470 6 H 0.041 0.959 7 C -0.260 4.260 8 N -0.585 5.585 9 Si 0.916 3.084 10 H -0.197 1.197 11 H -0.244 1.244 12 H -0.176 1.176 13 C 0.025 3.975 14 C -0.182 4.182 15 C 0.007 3.993 16 N -0.366 5.366 17 C 0.309 3.691 18 O -0.447 6.447 19 C -0.116 4.116 20 H 0.166 0.834 21 C -0.013 4.013 22 O -0.226 6.226 23 C 0.038 3.962 24 C -0.170 4.170 25 C -0.097 4.097 26 C -0.173 4.173 27 C -0.078 4.078 28 C -0.177 4.177 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.047 0.953 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.058 0.942 37 H 0.083 0.917 38 H 0.047 0.953 39 H 0.070 0.930 40 H 0.100 0.900 41 H 0.087 0.913 42 H 0.068 0.932 43 H 0.252 0.748 44 H 0.093 0.907 45 H 0.169 0.831 46 H 0.161 0.839 47 H 0.180 0.820 48 H 0.167 0.833 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 3.834 22.485 14.474 27.014 hybrid contribution -0.737 -1.488 0.905 1.891 sum 3.098 20.996 15.378 26.210 Atomic orbital electron populations 1.22141 0.96497 1.00380 1.01959 1.20866 0.93789 0.92879 0.89215 1.22517 1.01068 0.96196 1.02971 1.44296 1.63474 1.23496 1.01507 1.19844 1.28291 0.94005 1.04862 0.95902 1.27237 0.97988 1.02246 0.98523 1.71065 1.50627 1.01330 1.35493 0.83619 0.75422 0.73692 0.75657 1.19681 1.24422 1.17644 1.20773 0.95951 0.94569 0.86223 1.22452 1.00966 0.99891 0.94870 1.21220 0.89509 0.92514 0.96008 1.46003 1.25216 1.46436 1.18896 1.20435 0.87263 0.80317 0.81126 1.90700 1.38207 1.64750 1.51050 1.21596 0.94273 0.99216 0.96500 0.83424 1.24038 0.89996 0.96285 0.90967 1.86817 1.31534 1.70778 1.33475 1.19865 0.88060 0.96333 0.91894 1.20602 1.01724 1.04720 0.89993 1.21284 0.91352 0.96148 1.00931 1.21412 0.98945 1.02586 0.94407 1.20527 0.97230 0.95310 0.94769 1.20453 0.95385 1.06841 0.95040 0.91901 0.91189 0.95285 0.93394 0.93237 0.90832 0.90688 0.94244 0.91701 0.95256 0.92963 0.90050 0.91284 0.93163 0.74830 0.90727 0.83072 0.83870 0.81976 0.83272 0.86210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.05 9.27 71.98 0.67 -4.39 16 2 C 0.14 5.39 2.19 44.99 0.10 5.49 16 3 C -0.17 -5.13 7.32 71.98 0.53 -4.61 16 4 N -0.61 -26.64 2.16 -678.04 -1.46 -28.10 16 5 C -0.34 -18.69 9.74 84.03 0.82 -17.87 16 6 H 0.02 1.42 8.06 -2.91 -0.02 1.39 16 7 C -0.06 -3.61 4.93 84.86 0.42 -3.19 16 8 N -0.94 -59.09 13.70 21.65 0.30 -58.79 16 9 Si 1.09 50.17 24.18 68.60 1.66 51.83 16 10 H -0.27 -11.46 6.48 99.48 0.64 -10.82 16 11 H -0.32 -15.19 7.11 99.48 0.71 -14.48 16 12 H -0.25 -10.14 6.24 99.48 0.62 -9.52 16 13 C 0.15 5.40 4.93 86.38 0.43 5.82 16 14 C -0.14 -4.14 5.35 30.60 0.16 -3.97 16 15 C 0.13 3.35 5.67 86.38 0.49 3.84 16 16 N -0.71 -14.84 5.50 -463.06 -2.55 -17.39 16 17 C 0.52 12.32 7.08 87.66 0.62 12.94 16 18 O -0.57 -18.08 15.01 -3.04 -0.05 -18.13 16 19 C -0.09 -1.73 3.52 -11.40 -0.04 -1.77 16 20 H 0.15 1.90 8.14 -2.39 -0.02 1.88 16 21 C 0.06 1.00 7.50 72.56 0.54 1.54 16 22 O -0.31 -6.63 11.10 -95.10 -1.06 -7.69 16 23 C 0.08 1.84 7.04 22.68 0.16 2.00 16 24 C -0.15 -2.76 10.06 22.45 0.23 -2.54 16 25 C -0.08 -1.20 10.02 22.21 0.22 -0.97 16 26 C -0.16 -2.67 10.07 22.31 0.22 -2.44 16 27 C -0.06 -1.32 9.05 22.18 0.20 -1.12 16 28 C -0.18 -3.96 5.44 -19.53 -0.11 -4.06 16 29 H 0.06 1.85 6.93 -2.39 -0.02 1.84 16 30 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 32 H 0.05 2.18 4.24 -2.39 -0.01 2.17 16 33 H 0.05 1.58 5.12 -2.38 -0.01 1.57 16 34 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.07 1.95 6.39 -2.39 -0.02 1.93 16 36 H 0.25 15.77 8.73 -92.71 -0.81 14.96 16 37 H 0.06 2.02 6.72 -2.39 -0.02 2.00 16 38 H 0.03 1.14 8.04 -2.39 -0.02 1.12 16 39 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.08 2.18 5.40 -2.39 -0.01 2.16 16 41 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.42 6.31 8.47 -92.71 -0.79 5.52 16 44 H 0.07 1.32 7.91 -2.38 -0.02 1.30 16 45 H 0.15 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.14 2.04 8.06 -2.91 -0.02 2.01 16 47 H 0.16 1.32 8.06 -2.91 -0.02 1.30 16 48 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 49 H 0.12 2.72 7.64 -2.91 -0.02 2.69 16 Total: -1.00 -74.22 383.62 2.49 -71.73 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: -0.02 Total: 21.83 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: 5.66 Total: -15.30 kcal Atomic # 7 Polarization: -100.57 SS G_CDS: -3.71 Total: -104.28 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: -1.10 Total: -25.82 kcal Atomic # 14 Polarization: 50.17 SS G_CDS: 1.66 Total: 51.83 kcal Total: -74.22 2.49 -71.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691766884.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.338 kcal (2) G-P(sol) polarization free energy of solvation -74.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds