Wall clock time and date at job start Tue Mar 31 2020 16:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42907 * 113.99971 * 2 1 4 4 C 1.50698 * 109.46927 * 179.97438 * 3 2 1 5 5 C 1.38359 * 119.85455 * 269.71981 * 4 3 2 6 6 C 1.37957 * 120.14583 * 180.27664 * 5 4 3 7 7 C 1.39580 * 119.85224 * 0.02562 * 6 5 4 8 8 C 1.47843 * 120.14481 * 180.02562 * 7 6 5 9 9 O 1.21554 * 119.99968 * 179.97438 * 8 7 6 10 10 N 1.34772 * 119.99870 * 359.97438 * 8 7 6 11 11 C 1.46510 * 120.00018 * 174.96469 * 10 8 7 12 12 C 1.52997 * 109.46781 * 304.32218 * 11 10 8 13 13 C 1.53003 * 109.46891 * 64.32064 * 11 10 8 14 14 N 1.46495 * 109.47049 * 60.00055 * 13 11 10 15 15 C 1.36935 * 119.99641 * 179.97438 * 14 13 11 16 16 H 1.07997 * 120.00486 * 0.02562 * 15 14 13 17 17 C 1.38822 * 119.99889 * 180.02562 * 15 14 13 18 18 N 1.31614 * 119.99744 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99937 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.46958 * 60.00124 * 19 17 15 21 21 H 1.48496 * 109.47186 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47232 * 300.00524 * 19 17 15 23 23 C 1.52994 * 109.46966 * 184.32171 * 11 10 8 24 24 C 1.53007 * 117.49660 * 132.81649 * 23 11 10 25 25 C 1.53003 * 60.00014 * 252.50754 * 24 23 11 26 26 C 1.39580 * 119.70832 * 359.97438 * 7 6 5 27 27 C 1.37952 * 119.85638 * 0.02562 * 26 7 6 28 28 H 1.09003 * 109.47153 * 59.99835 * 1 2 3 29 29 H 1.09001 * 109.46952 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47160 * 299.99852 * 1 2 3 31 31 H 1.09002 * 109.46720 * 60.00141 * 3 2 1 32 32 H 1.08996 * 109.47329 * 300.00282 * 3 2 1 33 33 H 1.07999 * 119.92530 * 0.28668 * 5 4 3 34 34 H 1.08000 * 120.07351 * 180.02562 * 6 5 4 35 35 H 0.97000 * 120.00556 * 354.96121 * 10 8 7 36 36 H 1.09001 * 109.47522 * 60.00110 * 12 11 10 37 37 H 1.08998 * 109.47193 * 180.02562 * 12 11 10 38 38 H 1.09002 * 109.47594 * 299.99649 * 12 11 10 39 39 H 1.08998 * 109.46459 * 180.02562 * 13 11 10 40 40 H 1.09001 * 109.46834 * 300.00129 * 13 11 10 41 41 H 0.96999 * 120.00555 * 0.02562 * 14 13 11 42 42 H 0.97002 * 119.99653 * 179.97438 * 18 17 15 43 43 H 1.09001 * 115.55240 * 278.52287 * 23 11 10 44 44 H 1.08997 * 117.49671 * 0.02562 * 24 23 11 45 45 H 1.09004 * 117.49581 * 145.01779 * 24 23 11 46 46 H 1.08996 * 117.49659 * 252.51255 * 25 24 23 47 47 H 1.09001 * 117.49645 * 107.49054 * 25 24 23 48 48 H 1.08004 * 120.06829 * 179.97438 * 26 7 6 49 49 H 1.08004 * 119.92909 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.1991 1.1382 1.2009 6 6 5.5748 1.0350 1.2085 7 6 6.2740 0.9799 0.0017 8 6 7.7482 0.8687 0.0023 9 8 8.3545 0.8204 -1.0502 10 7 8.4199 0.8209 1.1697 11 6 9.8683 0.6000 1.1730 12 6 10.1890 -0.6908 0.4168 13 6 10.5654 1.7781 0.4896 14 7 10.2582 3.0140 1.2137 15 6 10.7761 4.2063 0.7833 16 1 11.4106 4.2357 -0.0902 17 6 10.4855 5.3775 1.4697 18 7 9.7127 5.3416 2.5344 19 14 11.1914 7.0041 0.8821 20 1 10.7260 7.2745 -0.5020 21 1 10.7341 8.0952 1.7796 22 1 12.6747 6.9357 0.9010 23 6 10.3628 0.4820 2.6160 24 6 11.3030 -0.6786 2.9479 25 6 9.8552 -0.7015 3.4423 26 6 5.5752 1.0291 -1.2056 27 6 4.1996 1.1323 -1.1991 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8465 -0.8899 33 1 3.6568 1.1811 2.1339 34 1 6.1095 0.9969 2.1460 35 1 7.9446 0.9327 2.0078 36 1 9.8366 -0.6068 -0.6113 37 1 11.2664 -0.8555 0.4196 38 1 9.6924 -1.5302 0.9036 39 1 11.6429 1.6135 0.4917 40 1 10.2129 1.8621 -0.5384 41 1 9.6886 2.9877 1.9984 42 1 9.5099 6.1599 3.0142 43 1 10.5252 1.4261 3.1360 44 1 11.5695 -1.3578 2.1381 45 1 12.0842 -0.4981 3.6863 46 1 9.6840 -0.5360 4.5059 47 1 9.1689 -1.3960 2.9579 48 1 6.1104 0.9873 -2.1427 49 1 3.6577 1.1709 -2.1326 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698651744.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:36 Heat of formation + Delta-G solvation = -10.055716 kcal Electronic energy + Delta-G solvation = -28812.096416 eV Core-core repulsion = 24933.777118 eV Total energy + Delta-G solvation = -3878.319299 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -40.36719 -39.24706 -37.98200 -37.21703 -34.62893 -33.52284 -32.40491 -31.20249 -30.74030 -29.57311 -27.61801 -25.97908 -25.65088 -23.75146 -22.68032 -22.46670 -22.09055 -22.02229 -20.06047 -18.77859 -17.86379 -17.12006 -16.68751 -16.30903 -16.26685 -15.68455 -15.33974 -14.97611 -14.61248 -14.57255 -14.34654 -14.22077 -13.77394 -13.54142 -13.21725 -13.17970 -12.68481 -12.57089 -12.54619 -12.26149 -12.02901 -11.91246 -11.80241 -11.38910 -11.33350 -11.10243 -11.02205 -10.79024 -10.76239 -10.70532 -10.16698 -10.08326 -10.01582 -9.79819 -9.61943 -9.33246 -8.99210 -8.89345 -8.73727 -8.51299 -6.79591 -5.69511 -2.95214 0.82517 1.37830 2.98876 3.36800 3.49173 3.52698 3.54521 3.65279 4.06331 4.14080 4.61396 4.63232 4.66420 4.80106 4.88855 4.94717 4.99029 5.03569 5.10105 5.12575 5.13930 5.22180 5.33730 5.35038 5.40775 5.49860 5.56050 5.66200 5.72031 5.78451 5.82784 5.95958 6.00196 6.09155 6.24201 6.25728 6.28971 6.31806 6.39892 6.43787 6.49607 6.60281 6.73590 6.79418 6.85188 6.96622 7.16784 7.78252 7.94802 8.50267 8.62976 9.61518 10.20030 10.55973 11.53751 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.009686 B = 0.003372 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2890.005577 B = 8302.458430 C =10005.198405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.101 3.899 4 C -0.076 4.076 5 C -0.106 4.106 6 C -0.086 4.086 7 C -0.115 4.115 8 C 0.563 3.437 9 O -0.531 6.531 10 N -0.703 5.703 11 C 0.203 3.797 12 C -0.165 4.165 13 C 0.144 3.856 14 N -0.725 5.725 15 C -0.229 4.229 16 H 0.068 0.932 17 C -0.017 4.017 18 N -0.937 5.937 19 Si 0.905 3.095 20 H -0.287 1.287 21 H -0.292 1.292 22 H -0.287 1.287 23 C -0.151 4.151 24 C -0.172 4.172 25 C -0.183 4.183 26 C -0.064 4.064 27 C -0.108 4.108 28 H 0.041 0.959 29 H 0.086 0.914 30 H 0.041 0.959 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.127 0.873 34 H 0.129 0.871 35 H 0.397 0.603 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.051 0.949 39 H 0.024 0.976 40 H 0.045 0.955 41 H 0.381 0.619 42 H 0.253 0.747 43 H 0.122 0.878 44 H 0.099 0.901 45 H 0.093 0.907 46 H 0.092 0.908 47 H 0.092 0.908 48 H 0.137 0.863 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.481 -14.383 -0.700 20.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C 0.025 3.975 4 C -0.077 4.077 5 C -0.124 4.124 6 C -0.105 4.105 7 C -0.118 4.118 8 C 0.350 3.650 9 O -0.409 6.409 10 N -0.353 5.353 11 C 0.117 3.883 12 C -0.223 4.223 13 C 0.016 3.984 14 N -0.370 5.370 15 C -0.360 4.360 16 H 0.086 0.914 17 C -0.212 4.212 18 N -0.587 5.587 19 Si 0.737 3.263 20 H -0.214 1.214 21 H -0.218 1.218 22 H -0.214 1.214 23 C -0.169 4.169 24 C -0.209 4.209 25 C -0.220 4.220 26 C -0.083 4.083 27 C -0.126 4.126 28 H 0.060 0.940 29 H 0.104 0.896 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.145 0.855 34 H 0.147 0.853 35 H 0.232 0.768 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.071 0.929 39 H 0.041 0.959 40 H 0.063 0.937 41 H 0.215 0.785 42 H 0.063 0.937 43 H 0.140 0.860 44 H 0.117 0.883 45 H 0.111 0.889 46 H 0.111 0.889 47 H 0.110 0.890 48 H 0.155 0.845 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -13.820 -14.471 -1.543 20.069 hybrid contribution -0.273 1.443 0.533 1.562 sum -14.093 -13.028 -1.009 19.218 Atomic orbital electron populations 1.22764 0.80997 1.02844 1.00038 1.87983 1.19585 1.27404 1.95423 1.21396 0.89861 0.85097 1.01176 1.19697 0.93923 1.00365 0.93693 1.20936 0.93950 0.99918 0.97580 1.21325 0.94284 0.97463 0.97380 1.20144 0.93576 1.03812 0.94305 1.18067 0.86537 0.76331 0.84061 1.90696 1.69220 1.49657 1.31352 1.45833 1.08367 1.72894 1.08251 1.20036 0.79198 0.95859 0.93177 1.22288 1.01679 0.95812 1.02505 1.21071 0.95950 0.85345 0.96063 1.42219 1.59953 1.01661 1.33135 1.19194 1.23147 0.85211 1.08485 0.91431 1.24671 1.00783 0.97594 0.98131 1.69635 1.41598 1.26948 1.20481 0.86284 0.78520 0.83842 0.77682 1.21416 1.21817 1.21401 1.22574 1.04144 0.94865 0.95339 1.23045 0.93087 1.01333 1.03449 1.22946 0.97441 1.01805 0.99842 1.21257 0.93576 0.95420 0.98020 1.20981 0.93942 1.00139 0.97558 0.94007 0.89550 0.93988 0.92155 0.92196 0.85478 0.85324 0.76785 0.90113 0.91521 0.92949 0.95870 0.93697 0.78465 0.93716 0.85962 0.88253 0.88891 0.88941 0.89007 0.84468 0.85494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.38 -3.99 10.69 -35.23 -0.38 -4.36 16 3 C 0.10 0.94 6.06 36.00 0.22 1.16 16 4 C -0.08 -0.89 5.52 -104.53 -0.58 -1.47 16 5 C -0.11 -1.24 9.68 -39.64 -0.38 -1.63 16 6 C -0.09 -1.12 9.54 -39.18 -0.37 -1.50 16 7 C -0.12 -1.77 5.87 -104.97 -0.62 -2.39 16 8 C 0.56 10.02 7.18 -12.33 -0.09 9.93 16 9 O -0.53 -10.91 12.58 5.32 0.07 -10.85 16 10 N -0.70 -11.51 4.67 -48.54 -0.23 -11.74 16 11 C 0.20 3.43 0.54 -131.82 -0.07 3.36 16 12 C -0.16 -2.47 6.98 37.16 0.26 -2.21 16 13 C 0.14 3.14 5.03 -4.04 -0.02 3.12 16 14 N -0.73 -18.64 5.04 -59.91 -0.30 -18.94 16 15 C -0.23 -6.61 9.99 -15.06 -0.15 -6.76 16 16 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 17 C -0.02 -0.49 5.50 -17.43 -0.10 -0.58 16 18 N -0.94 -28.38 13.06 55.49 0.72 -27.65 16 19 Si 0.91 23.08 29.55 -169.99 -5.02 18.05 16 20 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 21 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 C -0.15 -2.32 4.84 -90.62 -0.44 -2.75 16 24 C -0.17 -2.18 9.64 -26.73 -0.26 -2.44 16 25 C -0.18 -2.22 9.82 -26.73 -0.26 -2.48 16 26 C -0.06 -0.91 9.60 -39.19 -0.38 -1.29 16 27 C -0.11 -1.31 9.68 -39.64 -0.38 -1.69 16 28 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 32 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 33 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 34 H 0.13 1.46 6.42 -52.49 -0.34 1.12 16 35 H 0.40 5.78 6.53 -40.82 -0.27 5.52 16 36 H 0.08 1.37 6.03 -51.93 -0.31 1.06 16 37 H 0.07 0.92 6.78 -51.93 -0.35 0.57 16 38 H 0.05 0.69 6.98 -51.93 -0.36 0.33 16 39 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.05 1.09 6.32 -51.93 -0.33 0.76 16 41 H 0.38 10.01 6.62 -40.82 -0.27 9.74 16 42 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 43 H 0.12 2.25 7.08 -51.93 -0.37 1.88 16 44 H 0.10 1.17 5.88 -51.93 -0.31 0.87 16 45 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.09 1.04 7.34 -51.93 -0.38 0.66 16 48 H 0.14 1.96 7.65 -52.48 -0.40 1.55 16 49 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 LS Contribution 394.29 15.07 5.94 5.94 Total: -1.00 -33.91 394.29 -9.15 -43.07 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: -7.45 Total: 14.78 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: -2.51 Total: -8.30 kcal Atomic # 7 Polarization: -58.53 SS G_CDS: 0.20 Total: -58.33 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -0.31 Total: -15.21 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -5.02 Total: 18.05 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.91 -9.15 -43.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698651744.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.013 kcal (2) G-P(sol) polarization free energy of solvation -33.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds