Wall clock time and date at job start Tue Mar 31 2020 16:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42907 * 113.99971 * 2 1 4 4 C 1.50698 * 109.46927 * 179.97438 * 3 2 1 5 5 C 1.38359 * 119.85455 * 269.71981 * 4 3 2 6 6 C 1.37957 * 120.14583 * 180.27664 * 5 4 3 7 7 C 1.39580 * 119.85224 * 0.02562 * 6 5 4 8 8 C 1.47843 * 120.14481 * 180.02562 * 7 6 5 9 9 O 1.21554 * 119.99968 * 179.97438 * 8 7 6 10 10 N 1.34772 * 119.99870 * 359.97438 * 8 7 6 11 11 C 1.46510 * 120.00018 * 174.96469 * 10 8 7 12 12 C 1.52997 * 109.46781 * 304.32218 * 11 10 8 13 13 C 1.53003 * 109.46891 * 64.32064 * 11 10 8 14 14 N 1.46495 * 109.47049 * 60.00055 * 13 11 10 15 15 C 1.36935 * 119.99641 * 179.97438 * 14 13 11 16 16 H 1.07997 * 120.00486 * 0.02562 * 15 14 13 17 17 C 1.38822 * 119.99889 * 180.02562 * 15 14 13 18 18 N 1.31614 * 119.99744 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99937 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.46958 * 60.00124 * 19 17 15 21 21 H 1.48496 * 109.47186 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47232 * 300.00524 * 19 17 15 23 23 C 1.52994 * 109.46966 * 184.32171 * 11 10 8 24 24 C 1.53007 * 117.49660 * 132.81649 * 23 11 10 25 25 C 1.53003 * 60.00014 * 252.50754 * 24 23 11 26 26 C 1.39580 * 119.70832 * 359.97438 * 7 6 5 27 27 C 1.37952 * 119.85638 * 0.02562 * 26 7 6 28 28 H 1.09003 * 109.47153 * 59.99835 * 1 2 3 29 29 H 1.09001 * 109.46952 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47160 * 299.99852 * 1 2 3 31 31 H 1.09002 * 109.46720 * 60.00141 * 3 2 1 32 32 H 1.08996 * 109.47329 * 300.00282 * 3 2 1 33 33 H 1.07999 * 119.92530 * 0.28668 * 5 4 3 34 34 H 1.08000 * 120.07351 * 180.02562 * 6 5 4 35 35 H 0.97000 * 120.00556 * 354.96121 * 10 8 7 36 36 H 1.09001 * 109.47522 * 60.00110 * 12 11 10 37 37 H 1.08998 * 109.47193 * 180.02562 * 12 11 10 38 38 H 1.09002 * 109.47594 * 299.99649 * 12 11 10 39 39 H 1.08998 * 109.46459 * 180.02562 * 13 11 10 40 40 H 1.09001 * 109.46834 * 300.00129 * 13 11 10 41 41 H 0.96999 * 120.00555 * 0.02562 * 14 13 11 42 42 H 0.97002 * 119.99653 * 179.97438 * 18 17 15 43 43 H 1.09001 * 115.55240 * 278.52287 * 23 11 10 44 44 H 1.08997 * 117.49671 * 0.02562 * 24 23 11 45 45 H 1.09004 * 117.49581 * 145.01779 * 24 23 11 46 46 H 1.08996 * 117.49659 * 252.51255 * 25 24 23 47 47 H 1.09001 * 117.49645 * 107.49054 * 25 24 23 48 48 H 1.08004 * 120.06829 * 179.97438 * 26 7 6 49 49 H 1.08004 * 119.92909 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.1991 1.1382 1.2009 6 6 5.5748 1.0350 1.2085 7 6 6.2740 0.9799 0.0017 8 6 7.7482 0.8687 0.0023 9 8 8.3545 0.8204 -1.0502 10 7 8.4199 0.8209 1.1697 11 6 9.8683 0.6000 1.1730 12 6 10.1890 -0.6908 0.4168 13 6 10.5654 1.7781 0.4896 14 7 10.2582 3.0140 1.2137 15 6 10.7761 4.2063 0.7833 16 1 11.4106 4.2357 -0.0902 17 6 10.4855 5.3775 1.4697 18 7 9.7127 5.3416 2.5344 19 14 11.1914 7.0041 0.8821 20 1 10.7260 7.2745 -0.5020 21 1 10.7341 8.0952 1.7796 22 1 12.6747 6.9357 0.9010 23 6 10.3628 0.4820 2.6160 24 6 11.3030 -0.6786 2.9479 25 6 9.8552 -0.7015 3.4423 26 6 5.5752 1.0291 -1.2056 27 6 4.1996 1.1323 -1.1991 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8465 -0.8899 33 1 3.6568 1.1811 2.1339 34 1 6.1095 0.9969 2.1460 35 1 7.9446 0.9327 2.0078 36 1 9.8366 -0.6068 -0.6113 37 1 11.2664 -0.8555 0.4196 38 1 9.6924 -1.5302 0.9036 39 1 11.6429 1.6135 0.4917 40 1 10.2129 1.8621 -0.5384 41 1 9.6886 2.9877 1.9984 42 1 9.5099 6.1599 3.0142 43 1 10.5252 1.4261 3.1360 44 1 11.5695 -1.3578 2.1381 45 1 12.0842 -0.4981 3.6863 46 1 9.6840 -0.5360 4.5059 47 1 9.1689 -1.3960 2.9579 48 1 6.1104 0.9873 -2.1427 49 1 3.6577 1.1709 -2.1326 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698651744.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:34 Heat of formation + Delta-G solvation = -31.813207 kcal Electronic energy + Delta-G solvation = -28813.039892 eV Core-core repulsion = 24933.777118 eV Total energy + Delta-G solvation = -3879.262774 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -41.64155 -40.27299 -38.98969 -38.21319 -36.37405 -35.09183 -33.63250 -32.71749 -31.97795 -31.02392 -28.37264 -27.59340 -26.55145 -25.21616 -24.18711 -23.66328 -23.30184 -23.05630 -21.20944 -20.18841 -19.26214 -19.01846 -17.36828 -17.24135 -17.18643 -16.81360 -16.68899 -16.28438 -16.23107 -15.82235 -15.49577 -15.39965 -15.17108 -14.95367 -14.48245 -14.42729 -14.09216 -13.86084 -13.65118 -13.52784 -13.20158 -13.12857 -13.07093 -12.78029 -12.54557 -12.43934 -12.25378 -12.16946 -12.08362 -12.04985 -11.99163 -11.75423 -11.26066 -11.07402 -10.93270 -10.63916 -10.60411 -10.07568 -9.97696 -9.79554 -8.94898 -7.95206 -5.21298 -0.23169 0.38918 1.43399 1.46591 1.52547 1.83280 2.12398 2.54890 2.72619 3.03050 3.16335 3.36959 3.58777 3.71702 3.77230 3.89403 3.94278 3.95253 3.99979 4.17042 4.22392 4.25036 4.34631 4.44800 4.45872 4.56065 4.59998 4.62611 4.65972 4.78440 4.79741 4.86438 4.89308 4.90646 4.97566 5.01279 5.02903 5.12568 5.23968 5.29030 5.33019 5.37849 5.44336 5.48027 5.49390 5.66779 5.87101 6.20759 6.27208 6.63899 7.29141 7.34454 8.09036 8.37863 9.27600 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.009686 B = 0.003372 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2890.005577 B = 8302.458430 C =10005.198405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.410 6.410 3 C 0.101 3.899 4 C -0.075 4.075 5 C -0.107 4.107 6 C -0.088 4.088 7 C -0.143 4.143 8 C 0.555 3.445 9 O -0.570 6.570 10 N -0.697 5.697 11 C 0.211 3.789 12 C -0.155 4.155 13 C 0.145 3.855 14 N -0.728 5.728 15 C -0.245 4.245 16 H 0.062 0.938 17 C -0.069 4.069 18 N -0.962 5.962 19 Si 0.969 3.031 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.278 1.278 23 C -0.177 4.177 24 C -0.161 4.161 25 C -0.155 4.155 26 C -0.080 4.080 27 C -0.109 4.109 28 H 0.052 0.948 29 H 0.094 0.906 30 H 0.053 0.947 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.154 0.846 34 H 0.142 0.858 35 H 0.405 0.595 36 H 0.057 0.943 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.020 0.980 40 H 0.016 0.984 41 H 0.377 0.623 42 H 0.251 0.749 43 H 0.088 0.912 44 H 0.112 0.888 45 H 0.100 0.900 46 H 0.106 0.894 47 H 0.106 0.894 48 H 0.126 0.874 49 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.011 -15.254 0.372 22.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.330 6.330 3 C 0.025 3.975 4 C -0.075 4.075 5 C -0.124 4.124 6 C -0.107 4.107 7 C -0.146 4.146 8 C 0.344 3.656 9 O -0.450 6.450 10 N -0.347 5.347 11 C 0.125 3.875 12 C -0.213 4.213 13 C 0.017 3.983 14 N -0.371 5.371 15 C -0.377 4.377 16 H 0.080 0.920 17 C -0.262 4.262 18 N -0.613 5.613 19 Si 0.798 3.202 20 H -0.212 1.212 21 H -0.215 1.215 22 H -0.205 1.205 23 C -0.196 4.196 24 C -0.199 4.199 25 C -0.192 4.192 26 C -0.099 4.099 27 C -0.127 4.127 28 H 0.071 0.929 29 H 0.113 0.887 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.172 0.828 34 H 0.160 0.840 35 H 0.242 0.758 36 H 0.076 0.924 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.038 0.962 40 H 0.034 0.966 41 H 0.210 0.790 42 H 0.060 0.940 43 H 0.106 0.894 44 H 0.130 0.870 45 H 0.119 0.881 46 H 0.124 0.876 47 H 0.124 0.876 48 H 0.144 0.856 49 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -15.354 -15.366 -0.461 21.727 hybrid contribution 0.138 1.695 0.177 1.710 sum -15.215 -13.671 -0.284 20.457 Atomic orbital electron populations 1.22954 0.79196 1.03850 1.01153 1.87934 1.21582 1.27818 1.95672 1.21454 0.88045 0.85226 1.02772 1.20087 0.95595 0.98527 0.93315 1.21285 0.93409 0.98829 0.98914 1.21507 0.95125 0.97064 0.96975 1.20102 0.92213 1.06506 0.95779 1.18570 0.87753 0.75513 0.83770 1.90667 1.70255 1.51538 1.32587 1.45824 1.08198 1.72322 1.08389 1.19862 0.79052 0.94413 0.94148 1.22205 1.02727 0.95379 1.01020 1.21103 0.96177 0.86134 0.94837 1.42273 1.59596 1.02157 1.33122 1.19504 1.23130 0.86739 1.08354 0.91973 1.25432 1.01531 1.00718 0.98506 1.69774 1.42654 1.27515 1.21376 0.85282 0.78128 0.79706 0.77065 1.21177 1.21542 1.20457 1.22251 1.07972 0.94917 0.94441 1.23180 0.93662 0.99257 1.03768 1.23032 0.97205 0.98898 1.00080 1.21311 0.94727 0.96467 0.97379 1.21226 0.93001 0.99385 0.99052 0.92928 0.88713 0.92810 0.90478 0.90747 0.82801 0.84002 0.75790 0.92380 0.90198 0.90502 0.96227 0.96570 0.78969 0.93984 0.89399 0.86983 0.88136 0.87568 0.87595 0.85644 0.83322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 11.01 113.37 1.25 1.51 16 2 O -0.41 -7.51 10.69 -148.98 -1.59 -9.11 16 3 C 0.10 1.62 6.06 71.24 0.43 2.05 16 4 C -0.07 -1.61 5.52 -19.81 -0.11 -1.72 16 5 C -0.11 -2.31 9.68 22.23 0.22 -2.09 16 6 C -0.09 -2.25 9.54 22.53 0.21 -2.04 16 7 C -0.14 -4.52 5.87 -20.09 -0.12 -4.63 16 8 C 0.56 20.64 7.18 86.79 0.62 21.26 16 9 O -0.57 -24.89 12.58 -3.89 -0.05 -24.94 16 10 N -0.70 -23.34 4.67 -425.76 -1.99 -25.33 16 11 C 0.21 7.25 0.54 3.60 0.00 7.26 16 12 C -0.16 -4.60 6.98 71.98 0.50 -4.10 16 13 C 0.15 6.62 5.03 86.38 0.43 7.05 16 14 N -0.73 -38.88 5.04 -343.45 -1.73 -40.61 16 15 C -0.25 -14.56 9.99 84.04 0.84 -13.72 16 16 H 0.06 3.67 7.83 -2.91 -0.02 3.65 16 17 C -0.07 -4.11 5.50 84.87 0.47 -3.64 16 18 N -0.96 -59.14 13.06 21.65 0.28 -58.86 16 19 Si 0.97 47.97 29.55 68.60 2.03 49.99 16 20 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 21 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 22 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 23 C -0.18 -5.37 4.84 -10.79 -0.05 -5.42 16 24 C -0.16 -3.76 9.64 30.60 0.29 -3.46 16 25 C -0.16 -3.37 9.82 30.60 0.30 -3.07 16 26 C -0.08 -2.36 9.60 22.53 0.22 -2.14 16 27 C -0.11 -2.56 9.68 22.23 0.22 -2.34 16 28 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.05 0.45 8.14 -2.38 -0.02 0.43 16 31 H 0.08 0.98 8.08 -2.39 -0.02 0.96 16 32 H 0.07 0.97 8.08 -2.39 -0.02 0.95 16 33 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 34 H 0.14 3.10 6.42 -2.91 -0.02 3.08 16 35 H 0.41 11.88 6.53 -92.71 -0.61 11.28 16 36 H 0.06 2.02 6.03 -2.39 -0.01 2.01 16 37 H 0.08 2.12 6.78 -2.39 -0.02 2.10 16 38 H 0.08 1.89 6.98 -2.39 -0.02 1.87 16 39 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.02 0.84 6.32 -2.39 -0.02 0.83 16 41 H 0.38 20.55 6.62 -92.71 -0.61 19.94 16 42 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 43 H 0.09 3.33 7.08 -2.39 -0.02 3.31 16 44 H 0.11 2.33 5.88 -2.39 -0.01 2.32 16 45 H 0.10 2.20 8.14 -2.38 -0.02 2.18 16 46 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 47 H 0.11 2.04 7.34 -2.39 -0.02 2.02 16 48 H 0.13 3.87 7.65 -2.91 -0.02 3.84 16 49 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -75.47 394.29 2.43 -73.04 By element: Atomic # 1 Polarization: 45.30 SS G_CDS: -0.25 Total: 45.06 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: 5.73 Total: -9.24 kcal Atomic # 7 Polarization: -121.37 SS G_CDS: -3.44 Total: -124.81 kcal Atomic # 8 Polarization: -32.41 SS G_CDS: -1.64 Total: -34.05 kcal Atomic # 14 Polarization: 47.97 SS G_CDS: 2.03 Total: 49.99 kcal Total: -75.47 2.43 -73.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698651744.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.230 kcal (2) G-P(sol) polarization free energy of solvation -75.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds