Wall clock time and date at job start Tue Mar 31 2020 16:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42894 * 114.00499 * 2 1 4 4 C 1.50699 * 109.47164 * 180.02562 * 3 2 1 5 5 C 1.38365 * 119.85323 * 269.72473 * 4 3 2 6 6 C 1.37953 * 120.14399 * 179.72630 * 5 4 3 7 7 C 1.39582 * 119.85353 * 0.54974 * 6 5 4 8 8 C 1.47844 * 120.14396 * 179.70585 * 7 6 5 9 9 O 1.21548 * 119.99867 * 180.02562 * 8 7 6 10 10 N 1.34773 * 120.00028 * 0.02562 * 8 7 6 11 11 C 1.46505 * 119.99993 * 175.83190 * 10 8 7 12 12 C 1.52999 * 109.47169 * 175.43847 * 11 10 8 13 13 C 1.52996 * 109.47153 * 55.43712 * 11 10 8 14 14 N 1.46503 * 109.47001 * 60.00176 * 13 11 10 15 15 C 1.36941 * 120.00277 * 180.02562 * 14 13 11 16 16 H 1.07999 * 119.99473 * 359.97438 * 15 14 13 17 17 C 1.38808 * 120.00325 * 180.02562 * 15 14 13 18 18 N 1.31621 * 119.99707 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00149 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47320 * 59.99604 * 19 17 15 21 21 H 1.48503 * 109.47208 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47209 * 299.99647 * 19 17 15 23 23 C 1.53004 * 109.47001 * 295.43941 * 11 10 8 24 24 C 1.53005 * 117.49678 * 1.78468 * 23 11 10 25 25 C 1.53000 * 117.49798 * 293.12521 * 23 11 10 26 26 C 1.39575 * 119.71011 * 359.72499 * 7 6 5 27 27 C 1.37961 * 119.85208 * 0.02562 * 26 7 6 28 28 H 1.09000 * 109.46748 * 300.00012 * 1 2 3 29 29 H 1.09005 * 109.47054 * 59.99304 * 1 2 3 30 30 H 1.08994 * 109.47588 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47180 * 300.00389 * 3 2 1 32 32 H 1.08997 * 109.47183 * 59.99886 * 3 2 1 33 33 H 1.08002 * 119.92447 * 0.02562 * 5 4 3 34 34 H 1.08003 * 120.07604 * 180.25649 * 6 5 4 35 35 H 0.97004 * 120.00028 * 355.82529 * 10 8 7 36 36 H 1.09003 * 109.46988 * 60.00262 * 12 11 10 37 37 H 1.09001 * 109.46969 * 179.97438 * 12 11 10 38 38 H 1.09003 * 109.47173 * 299.99898 * 12 11 10 39 39 H 1.09000 * 109.47422 * 179.97438 * 13 11 10 40 40 H 1.08998 * 109.47595 * 300.00678 * 13 11 10 41 41 H 0.97003 * 120.00244 * 359.97438 * 14 13 11 42 42 H 0.97008 * 119.99737 * 180.02562 * 18 17 15 43 43 H 1.08994 * 115.54814 * 147.45535 * 23 11 10 44 44 H 1.08995 * 117.49840 * 0.02562 * 24 23 11 45 45 H 1.08996 * 117.49385 * 145.02270 * 24 23 11 46 46 H 1.08997 * 117.49769 * 214.97957 * 25 23 11 47 47 H 1.09007 * 117.49997 * 0.02562 * 25 23 11 48 48 H 1.07999 * 120.07295 * 179.97438 * 26 7 6 49 49 H 1.08000 * 119.92663 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5126 1.1862 -0.0006 5 6 4.2002 1.1373 1.1991 6 6 5.5749 1.0226 1.2056 7 6 6.2732 0.9675 -0.0018 8 6 7.7471 0.8512 -0.0023 9 8 8.3525 0.8038 -1.0552 10 7 8.4192 0.7976 1.1646 11 6 9.8696 0.5906 1.1656 12 6 10.3970 0.6833 2.5989 13 6 10.5387 1.6645 0.3055 14 7 10.2340 2.9887 0.8533 15 6 10.7284 4.1116 0.2451 16 1 11.3433 4.0210 -0.6381 17 6 10.4402 5.3662 0.7644 18 7 9.6912 5.4766 1.8411 19 14 11.1140 6.8980 -0.0656 20 1 10.6145 6.9645 -1.4626 21 1 10.6648 8.1023 0.6781 22 1 12.5981 6.8450 -0.0726 23 6 10.1878 -0.7923 0.5936 24 6 9.0124 -1.6444 0.1103 25 6 9.7434 -2.0115 1.4042 26 6 5.5740 1.0231 -1.2085 27 6 4.1988 1.1326 -1.2009 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5140 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6887 1.8463 -0.8900 32 1 1.6888 1.8463 0.8899 33 1 3.6589 1.1842 2.1326 34 1 6.1101 0.9804 2.1427 35 1 7.9428 0.8962 2.0037 36 1 9.9203 -0.0819 3.2116 37 1 11.4760 0.5289 2.5997 38 1 10.1703 1.6686 3.0064 39 1 11.6178 1.5108 0.3067 40 1 10.1629 1.5986 -0.7155 41 1 9.6814 3.0701 1.6464 42 1 9.4895 6.3534 2.2038 43 1 11.1250 -0.8688 0.0425 44 1 8.0127 -1.2196 0.1995 45 1 9.1767 -2.2817 -0.7585 46 1 10.3882 -2.8901 1.3860 47 1 9.2240 -1.8284 2.3449 48 1 6.1084 0.9813 -2.1460 49 1 3.6565 1.1761 -2.1339 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698651745.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:40 Heat of formation + Delta-G solvation = -2.403925 kcal Electronic energy + Delta-G solvation = -29127.928541 eV Core-core repulsion = 25249.941049 eV Total energy + Delta-G solvation = -3877.987492 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.54312 -39.25262 -37.82437 -36.80717 -34.90288 -33.42559 -32.35557 -31.29339 -30.75467 -29.46794 -27.63078 -26.04516 -25.70356 -23.70807 -22.67596 -22.62544 -22.05323 -21.28163 -20.39223 -18.93028 -17.83279 -17.21188 -16.67732 -16.32737 -16.15731 -15.81778 -15.37722 -14.98702 -14.61286 -14.38421 -14.21452 -14.10279 -13.73309 -13.53682 -13.21701 -13.08353 -12.83081 -12.58094 -12.53859 -12.08810 -12.03483 -11.84787 -11.78227 -11.38377 -11.25152 -11.09605 -11.02354 -10.80497 -10.74491 -10.68935 -10.18190 -10.02084 -10.01019 -9.81383 -9.60065 -9.26515 -8.98394 -8.87445 -8.66277 -8.51005 -6.75379 -5.67380 -2.92642 0.84198 1.38625 3.01954 3.46961 3.50630 3.53838 3.55746 3.67350 4.04067 4.11396 4.62060 4.63700 4.66662 4.86548 4.90771 4.95278 4.99216 5.03849 5.09470 5.13925 5.17126 5.22007 5.33964 5.35279 5.48138 5.57535 5.59289 5.68880 5.74456 5.80398 5.81600 5.96817 6.02945 6.09175 6.20974 6.25442 6.32755 6.33842 6.39635 6.44080 6.44642 6.65658 6.69034 6.80043 6.86157 7.00767 7.25805 7.80307 7.95602 8.52647 8.69157 9.63693 10.22808 10.58426 11.56007 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.009702 B = 0.003605 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2885.247763 B = 7764.322968 C = 9753.593165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.101 3.899 4 C -0.077 4.077 5 C -0.106 4.106 6 C -0.088 4.088 7 C -0.116 4.116 8 C 0.565 3.435 9 O -0.518 6.518 10 N -0.711 5.711 11 C 0.201 3.799 12 C -0.148 4.148 13 C 0.138 3.862 14 N -0.725 5.725 15 C -0.226 4.226 16 H 0.067 0.933 17 C -0.018 4.018 18 N -0.938 5.938 19 Si 0.905 3.095 20 H -0.287 1.287 21 H -0.292 1.292 22 H -0.287 1.287 23 C -0.143 4.143 24 C -0.164 4.164 25 C -0.183 4.183 26 C -0.063 4.063 27 C -0.107 4.107 28 H 0.041 0.959 29 H 0.041 0.959 30 H 0.086 0.914 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.127 0.873 34 H 0.128 0.872 35 H 0.394 0.606 36 H 0.052 0.948 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.020 0.980 40 H 0.058 0.942 41 H 0.381 0.619 42 H 0.253 0.747 43 H 0.108 0.892 44 H 0.092 0.908 45 H 0.086 0.914 46 H 0.088 0.912 47 H 0.090 0.910 48 H 0.138 0.862 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.891 -14.762 0.685 20.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C 0.025 3.975 4 C -0.077 4.077 5 C -0.124 4.124 6 C -0.106 4.106 7 C -0.119 4.119 8 C 0.353 3.647 9 O -0.395 6.395 10 N -0.362 5.362 11 C 0.115 3.885 12 C -0.206 4.206 13 C 0.010 3.990 14 N -0.370 5.370 15 C -0.358 4.358 16 H 0.085 0.915 17 C -0.213 4.213 18 N -0.588 5.588 19 Si 0.737 3.263 20 H -0.214 1.214 21 H -0.218 1.218 22 H -0.214 1.214 23 C -0.163 4.163 24 C -0.201 4.201 25 C -0.220 4.220 26 C -0.082 4.082 27 C -0.125 4.125 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.104 0.896 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.145 0.855 34 H 0.145 0.855 35 H 0.229 0.771 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.038 0.962 40 H 0.075 0.925 41 H 0.215 0.785 42 H 0.062 0.938 43 H 0.127 0.873 44 H 0.110 0.890 45 H 0.105 0.895 46 H 0.107 0.893 47 H 0.108 0.892 48 H 0.156 0.844 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -14.228 -14.855 -0.183 20.570 hybrid contribution -0.284 1.356 0.275 1.413 sum -14.512 -13.498 0.093 19.820 Atomic orbital electron populations 1.22763 0.81001 1.02840 1.00035 1.87980 1.19577 1.27410 1.95420 1.21388 0.89875 0.85089 1.01164 1.19688 0.93906 1.00431 0.93689 1.20925 0.93954 0.99955 0.97559 1.21301 0.94292 0.97748 0.97302 1.20197 0.93745 1.03696 0.94276 1.17915 0.86422 0.76167 0.84243 1.90731 1.68915 1.48656 1.31152 1.45901 1.08254 1.73942 1.08124 1.20073 0.79181 0.92876 0.96393 1.21993 1.01919 1.02557 0.94095 1.21187 0.95737 0.84695 0.97346 1.42231 1.61872 0.99627 1.33228 1.19187 1.24215 0.85026 1.07354 0.91466 1.24662 1.01033 0.97297 0.98272 1.69641 1.42659 1.22696 1.23762 0.86285 0.78419 0.83033 0.78599 1.21441 1.21839 1.21428 1.22564 0.99527 0.90896 1.03277 1.22938 0.97283 1.02808 0.97052 1.22970 1.04368 0.98857 0.95817 1.21265 0.93562 0.95304 0.98080 1.20984 0.93968 1.00041 0.97548 0.93994 0.94011 0.89551 0.92208 0.92176 0.85533 0.85460 0.77136 0.92915 0.90968 0.90729 0.96228 0.92477 0.78506 0.93761 0.87349 0.88981 0.89504 0.89348 0.89151 0.84444 0.85506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.32 16 2 O -0.38 -4.01 10.69 -35.23 -0.38 -4.39 16 3 C 0.10 0.95 6.06 36.01 0.22 1.17 16 4 C -0.08 -0.90 5.52 -104.53 -0.58 -1.48 16 5 C -0.11 -1.24 9.68 -39.64 -0.38 -1.62 16 6 C -0.09 -1.14 9.54 -39.18 -0.37 -1.51 16 7 C -0.12 -1.79 5.87 -104.97 -0.62 -2.41 16 8 C 0.57 10.00 4.78 -12.33 -0.06 9.95 16 9 O -0.52 -10.75 12.62 5.32 0.07 -10.69 16 10 N -0.71 -11.37 4.15 -48.54 -0.20 -11.57 16 11 C 0.20 3.35 0.55 -131.82 -0.07 3.27 16 12 C -0.15 -2.22 8.18 37.16 0.30 -1.92 16 13 C 0.14 3.01 4.84 -4.04 -0.02 2.99 16 14 N -0.73 -18.71 5.17 -59.91 -0.31 -19.02 16 15 C -0.23 -6.57 9.99 -15.06 -0.15 -6.72 16 16 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 17 C -0.02 -0.52 5.50 -17.43 -0.10 -0.61 16 18 N -0.94 -28.59 13.06 55.49 0.72 -27.87 16 19 Si 0.91 23.21 29.55 -169.99 -5.02 18.18 16 20 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 21 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 22 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 23 C -0.14 -2.12 4.86 -90.62 -0.44 -2.56 16 24 C -0.16 -2.31 8.53 -26.69 -0.23 -2.54 16 25 C -0.18 -2.22 9.68 -26.69 -0.26 -2.48 16 26 C -0.06 -0.92 9.60 -39.18 -0.38 -1.30 16 27 C -0.11 -1.32 9.68 -39.64 -0.38 -1.71 16 28 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 32 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 33 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 34 H 0.13 1.40 6.41 -52.48 -0.34 1.06 16 35 H 0.39 5.42 6.53 -40.82 -0.27 5.16 16 36 H 0.05 0.64 6.89 -51.93 -0.36 0.28 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.07 1.29 6.86 -51.93 -0.36 0.93 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 1.39 5.72 -51.93 -0.30 1.09 16 41 H 0.38 10.05 6.35 -40.82 -0.26 9.79 16 42 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 43 H 0.11 1.61 8.06 -51.93 -0.42 1.20 16 44 H 0.09 1.39 5.16 -51.93 -0.27 1.12 16 45 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 46 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 47 H 0.09 1.03 7.17 -51.93 -0.37 0.66 16 48 H 0.14 2.02 7.65 -52.49 -0.40 1.62 16 49 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 LS Contribution 392.64 15.07 5.92 5.92 Total: -1.00 -34.36 392.64 -9.13 -43.49 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: -7.52 Total: 14.10 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: -2.40 Total: -8.16 kcal Atomic # 7 Polarization: -58.67 SS G_CDS: 0.21 Total: -58.46 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -0.31 Total: -15.07 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -5.02 Total: 18.18 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.36 -9.13 -43.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698651745.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.085 kcal (2) G-P(sol) polarization free energy of solvation -34.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds