Wall clock time and date at job start Tue Mar 31 2020 16:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42894 * 114.00499 * 2 1 4 4 C 1.50699 * 109.47164 * 180.02562 * 3 2 1 5 5 C 1.38365 * 119.85323 * 269.72473 * 4 3 2 6 6 C 1.37953 * 120.14399 * 179.72630 * 5 4 3 7 7 C 1.39582 * 119.85353 * 0.54974 * 6 5 4 8 8 C 1.47844 * 120.14396 * 179.70585 * 7 6 5 9 9 O 1.21548 * 119.99867 * 180.02562 * 8 7 6 10 10 N 1.34773 * 120.00028 * 0.02562 * 8 7 6 11 11 C 1.46505 * 119.99993 * 175.83190 * 10 8 7 12 12 C 1.52999 * 109.47169 * 175.43847 * 11 10 8 13 13 C 1.52996 * 109.47153 * 55.43712 * 11 10 8 14 14 N 1.46503 * 109.47001 * 60.00176 * 13 11 10 15 15 C 1.36941 * 120.00277 * 180.02562 * 14 13 11 16 16 H 1.07999 * 119.99473 * 359.97438 * 15 14 13 17 17 C 1.38808 * 120.00325 * 180.02562 * 15 14 13 18 18 N 1.31621 * 119.99707 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00149 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47320 * 59.99604 * 19 17 15 21 21 H 1.48503 * 109.47208 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47209 * 299.99647 * 19 17 15 23 23 C 1.53004 * 109.47001 * 295.43941 * 11 10 8 24 24 C 1.53005 * 117.49678 * 1.78468 * 23 11 10 25 25 C 1.53000 * 117.49798 * 293.12521 * 23 11 10 26 26 C 1.39575 * 119.71011 * 359.72499 * 7 6 5 27 27 C 1.37961 * 119.85208 * 0.02562 * 26 7 6 28 28 H 1.09000 * 109.46748 * 300.00012 * 1 2 3 29 29 H 1.09005 * 109.47054 * 59.99304 * 1 2 3 30 30 H 1.08994 * 109.47588 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47180 * 300.00389 * 3 2 1 32 32 H 1.08997 * 109.47183 * 59.99886 * 3 2 1 33 33 H 1.08002 * 119.92447 * 0.02562 * 5 4 3 34 34 H 1.08003 * 120.07604 * 180.25649 * 6 5 4 35 35 H 0.97004 * 120.00028 * 355.82529 * 10 8 7 36 36 H 1.09003 * 109.46988 * 60.00262 * 12 11 10 37 37 H 1.09001 * 109.46969 * 179.97438 * 12 11 10 38 38 H 1.09003 * 109.47173 * 299.99898 * 12 11 10 39 39 H 1.09000 * 109.47422 * 179.97438 * 13 11 10 40 40 H 1.08998 * 109.47595 * 300.00678 * 13 11 10 41 41 H 0.97003 * 120.00244 * 359.97438 * 14 13 11 42 42 H 0.97008 * 119.99737 * 180.02562 * 18 17 15 43 43 H 1.08994 * 115.54814 * 147.45535 * 23 11 10 44 44 H 1.08995 * 117.49840 * 0.02562 * 24 23 11 45 45 H 1.08996 * 117.49385 * 145.02270 * 24 23 11 46 46 H 1.08997 * 117.49769 * 214.97957 * 25 23 11 47 47 H 1.09007 * 117.49997 * 0.02562 * 25 23 11 48 48 H 1.07999 * 120.07295 * 179.97438 * 26 7 6 49 49 H 1.08000 * 119.92663 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5126 1.1862 -0.0006 5 6 4.2002 1.1373 1.1991 6 6 5.5749 1.0226 1.2056 7 6 6.2732 0.9675 -0.0018 8 6 7.7471 0.8512 -0.0023 9 8 8.3525 0.8038 -1.0552 10 7 8.4192 0.7976 1.1646 11 6 9.8696 0.5906 1.1656 12 6 10.3970 0.6833 2.5989 13 6 10.5387 1.6645 0.3055 14 7 10.2340 2.9887 0.8533 15 6 10.7284 4.1116 0.2451 16 1 11.3433 4.0210 -0.6381 17 6 10.4402 5.3662 0.7644 18 7 9.6912 5.4766 1.8411 19 14 11.1140 6.8980 -0.0656 20 1 10.6145 6.9645 -1.4626 21 1 10.6648 8.1023 0.6781 22 1 12.5981 6.8450 -0.0726 23 6 10.1878 -0.7923 0.5936 24 6 9.0124 -1.6444 0.1103 25 6 9.7434 -2.0115 1.4042 26 6 5.5740 1.0231 -1.2085 27 6 4.1988 1.1326 -1.2009 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5140 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6887 1.8463 -0.8900 32 1 1.6888 1.8463 0.8899 33 1 3.6589 1.1842 2.1326 34 1 6.1101 0.9804 2.1427 35 1 7.9428 0.8962 2.0037 36 1 9.9203 -0.0819 3.2116 37 1 11.4760 0.5289 2.5997 38 1 10.1703 1.6686 3.0064 39 1 11.6178 1.5108 0.3067 40 1 10.1629 1.5986 -0.7155 41 1 9.6814 3.0701 1.6464 42 1 9.4895 6.3534 2.2038 43 1 11.1250 -0.8688 0.0425 44 1 8.0127 -1.2196 0.1995 45 1 9.1767 -2.2817 -0.7585 46 1 10.3882 -2.8901 1.3860 47 1 9.2240 -1.8284 2.3449 48 1 6.1084 0.9813 -2.1460 49 1 3.6565 1.1761 -2.1339 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698651745.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:39 Heat of formation + Delta-G solvation = -24.568880 kcal Electronic energy + Delta-G solvation = -29128.889685 eV Core-core repulsion = 25249.941049 eV Total energy + Delta-G solvation = -3878.948637 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.81909 -40.24752 -38.69814 -37.99456 -36.58368 -34.99867 -33.69496 -32.68072 -31.96416 -31.04186 -28.38154 -27.64165 -26.52785 -25.53357 -23.76549 -23.66012 -23.10783 -22.86362 -21.53216 -20.30529 -19.30258 -18.96029 -17.37177 -17.33580 -17.05413 -16.98029 -16.77737 -16.28681 -16.09174 -15.57450 -15.40532 -15.32697 -15.15192 -14.95602 -14.60674 -14.45927 -14.13476 -13.71864 -13.53467 -13.36934 -13.29174 -13.11865 -12.99660 -12.78404 -12.52406 -12.41158 -12.28498 -12.17241 -12.14517 -12.05181 -11.98671 -11.76589 -11.23164 -11.10980 -10.93924 -10.63974 -10.45982 -10.03515 -9.97419 -9.78753 -8.90231 -7.93994 -5.19332 -0.21447 0.39024 1.43582 1.46871 1.52759 1.88478 2.21163 2.55421 2.74394 2.95504 3.16493 3.38821 3.65260 3.71185 3.76322 3.91403 3.98689 4.00964 4.02765 4.18198 4.23281 4.34314 4.37004 4.37499 4.44737 4.56187 4.56618 4.60292 4.65068 4.79722 4.80653 4.87085 4.90380 4.92247 4.96679 5.01348 5.07563 5.20967 5.25476 5.30308 5.32040 5.34724 5.41866 5.47632 5.49420 5.73031 5.87558 6.20592 6.28988 6.66689 7.35528 7.37783 8.11501 8.39971 9.28905 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.009702 B = 0.003605 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2885.247763 B = 7764.322968 C = 9753.593165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.410 6.410 3 C 0.101 3.899 4 C -0.076 4.076 5 C -0.106 4.106 6 C -0.089 4.089 7 C -0.144 4.144 8 C 0.561 3.439 9 O -0.560 6.560 10 N -0.703 5.703 11 C 0.208 3.792 12 C -0.140 4.140 13 C 0.138 3.862 14 N -0.728 5.728 15 C -0.242 4.242 16 H 0.061 0.939 17 C -0.070 4.070 18 N -0.963 5.963 19 Si 0.968 3.032 20 H -0.286 1.286 21 H -0.290 1.290 22 H -0.278 1.278 23 C -0.162 4.162 24 C -0.174 4.174 25 C -0.147 4.147 26 C -0.082 4.082 27 C -0.109 4.109 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.095 0.905 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.156 0.844 34 H 0.145 0.855 35 H 0.405 0.595 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.049 0.951 39 H 0.017 0.983 40 H 0.029 0.971 41 H 0.377 0.623 42 H 0.251 0.749 43 H 0.102 0.898 44 H 0.081 0.919 45 H 0.086 0.914 46 H 0.111 0.889 47 H 0.105 0.895 48 H 0.122 0.878 49 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.443 -15.549 2.110 22.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.330 6.330 3 C 0.025 3.975 4 C -0.076 4.076 5 C -0.124 4.124 6 C -0.107 4.107 7 C -0.147 4.147 8 C 0.350 3.650 9 O -0.440 6.440 10 N -0.355 5.355 11 C 0.122 3.878 12 C -0.197 4.197 13 C 0.011 3.989 14 N -0.372 5.372 15 C -0.374 4.374 16 H 0.079 0.921 17 C -0.263 4.263 18 N -0.614 5.614 19 Si 0.798 3.202 20 H -0.213 1.213 21 H -0.215 1.215 22 H -0.204 1.204 23 C -0.181 4.181 24 C -0.211 4.211 25 C -0.184 4.184 26 C -0.101 4.101 27 C -0.127 4.127 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.113 0.887 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.173 0.827 34 H 0.163 0.837 35 H 0.242 0.758 36 H 0.107 0.893 37 H 0.094 0.906 38 H 0.068 0.932 39 H 0.034 0.966 40 H 0.047 0.953 41 H 0.210 0.790 42 H 0.060 0.940 43 H 0.121 0.879 44 H 0.099 0.901 45 H 0.105 0.895 46 H 0.129 0.871 47 H 0.124 0.876 48 H 0.140 0.860 49 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -15.784 -15.668 1.261 22.276 hybrid contribution 0.121 1.563 -0.220 1.583 sum -15.662 -14.106 1.041 21.104 Atomic orbital electron populations 1.22954 0.79192 1.03852 1.01151 1.87932 1.21582 1.27816 1.95669 1.21444 0.88065 0.85222 1.02744 1.20078 0.95579 0.98635 0.93315 1.21294 0.93468 0.98741 0.98867 1.21520 0.95108 0.97143 0.96963 1.20163 0.92495 1.06293 0.95715 1.18353 0.87519 0.75198 0.83948 1.90699 1.69984 1.50784 1.32559 1.45835 1.07979 1.73305 1.08341 1.19900 0.79166 0.92203 0.96528 1.21931 1.02426 1.02319 0.93058 1.21222 0.95885 0.84772 0.97012 1.42288 1.61521 1.00426 1.32924 1.19488 1.24139 0.86497 1.07303 0.92105 1.25412 1.01756 0.99974 0.99136 1.69776 1.43707 1.23066 1.24851 0.85293 0.78119 0.79384 0.77450 1.21309 1.21541 1.20444 1.22439 0.99660 0.90766 1.05273 1.22912 0.96507 1.02976 0.98718 1.23076 1.02684 0.97472 0.95125 1.21297 0.94738 0.96611 0.97438 1.21211 0.93018 0.99444 0.99050 0.92752 0.92992 0.88703 0.90894 0.90391 0.82686 0.83714 0.75788 0.89270 0.90648 0.93196 0.96566 0.95304 0.78983 0.94036 0.87940 0.90103 0.89526 0.87116 0.87621 0.85980 0.83541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 11.01 113.37 1.25 1.52 16 2 O -0.41 -7.59 10.69 -148.98 -1.59 -9.18 16 3 C 0.10 1.65 6.06 71.24 0.43 2.08 16 4 C -0.08 -1.64 5.52 -19.81 -0.11 -1.75 16 5 C -0.11 -2.27 9.68 22.23 0.22 -2.05 16 6 C -0.09 -2.23 9.54 22.53 0.21 -2.01 16 7 C -0.14 -4.55 5.87 -20.09 -0.12 -4.67 16 8 C 0.56 20.68 4.78 86.79 0.41 21.09 16 9 O -0.56 -24.80 12.62 -3.87 -0.05 -24.85 16 10 N -0.70 -22.72 4.15 -425.76 -1.77 -24.49 16 11 C 0.21 6.99 0.55 3.60 0.00 6.99 16 12 C -0.14 -4.05 8.18 71.98 0.59 -3.46 16 13 C 0.14 6.27 4.84 86.38 0.42 6.68 16 14 N -0.73 -38.77 5.17 -343.45 -1.78 -40.55 16 15 C -0.24 -14.42 9.99 84.03 0.84 -13.58 16 16 H 0.06 3.61 7.83 -2.91 -0.02 3.59 16 17 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 18 N -0.96 -59.34 13.06 21.65 0.28 -59.05 16 19 Si 0.97 48.20 29.55 68.60 2.03 50.23 16 20 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 21 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 22 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 23 C -0.16 -4.73 4.86 -10.79 -0.05 -4.78 16 24 C -0.17 -4.85 8.53 30.62 0.26 -4.59 16 25 C -0.15 -3.17 9.68 30.62 0.30 -2.87 16 26 C -0.08 -2.48 9.60 22.53 0.22 -2.27 16 27 C -0.11 -2.65 9.68 22.23 0.22 -2.43 16 28 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.05 0.46 8.14 -2.38 -0.02 0.44 16 30 H 0.09 0.85 8.14 -2.39 -0.02 0.84 16 31 H 0.07 0.99 8.08 -2.39 -0.02 0.97 16 32 H 0.08 0.99 8.08 -2.39 -0.02 0.97 16 33 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 34 H 0.15 2.96 6.41 -2.91 -0.02 2.95 16 35 H 0.41 10.94 6.53 -92.71 -0.60 10.33 16 36 H 0.09 1.91 6.89 -2.39 -0.02 1.90 16 37 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.05 1.70 6.86 -2.39 -0.02 1.69 16 39 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.03 1.50 5.72 -2.39 -0.01 1.48 16 41 H 0.38 20.42 6.35 -92.71 -0.59 19.83 16 42 H 0.25 14.98 8.31 -92.70 -0.77 14.20 16 43 H 0.10 3.09 8.06 -2.39 -0.02 3.07 16 44 H 0.08 2.46 5.16 -2.39 -0.01 2.45 16 45 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 46 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 47 H 0.11 1.99 7.17 -2.38 -0.02 1.97 16 48 H 0.12 3.94 7.65 -2.91 -0.02 3.92 16 49 H 0.15 2.83 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -76.33 392.64 2.45 -73.88 By element: Atomic # 1 Polarization: 44.06 SS G_CDS: -0.22 Total: 43.84 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: 5.55 Total: -9.83 kcal Atomic # 7 Polarization: -120.82 SS G_CDS: -3.26 Total: -124.08 kcal Atomic # 8 Polarization: -32.39 SS G_CDS: -1.64 Total: -34.03 kcal Atomic # 14 Polarization: 48.20 SS G_CDS: 2.03 Total: 50.23 kcal Total: -76.33 2.45 -73.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698651745.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.314 kcal (2) G-P(sol) polarization free energy of solvation -76.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds