Wall clock time and date at job start Tue Mar 31 2020 16:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35892 * 116.99752 * 2 1 4 4 C 1.38761 * 120.06100 * 359.73294 * 3 2 1 5 5 C 1.38113 * 119.94581 * 179.69839 * 4 3 2 6 6 C 1.38294 * 120.05709 * 0.59040 * 5 4 3 7 7 C 1.38242 * 120.10863 * 359.68488 * 6 5 4 8 8 C 1.50704 * 119.97152 * 179.97438 * 7 6 5 9 9 C 1.50696 * 109.47022 * 270.02353 * 8 7 6 10 10 O 1.21280 * 119.99969 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99946 * 180.02562 * 9 8 7 12 12 C 1.46501 * 120.00028 * 174.98221 * 11 9 8 13 13 C 1.52989 * 109.47415 * 304.29701 * 12 11 9 14 14 C 1.53005 * 109.46704 * 64.29792 * 12 11 9 15 15 N 1.46501 * 109.47036 * 59.99910 * 14 12 11 16 16 C 1.36936 * 119.99770 * 180.02562 * 15 14 12 17 17 H 1.08005 * 120.00318 * 359.97438 * 16 15 14 18 18 C 1.38814 * 120.00205 * 179.97438 * 16 15 14 19 19 N 1.31627 * 119.99576 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00199 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.46815 * 90.00160 * 20 18 16 22 22 H 1.48497 * 109.47130 * 209.99805 * 20 18 16 23 23 H 1.48497 * 109.47136 * 330.00301 * 20 18 16 24 24 C 1.52998 * 109.47029 * 184.29117 * 12 11 9 25 25 C 1.53001 * 117.49663 * 132.73945 * 24 12 11 26 26 C 1.53004 * 117.49478 * 64.08522 * 24 12 11 27 27 C 1.38169 * 120.05941 * 0.02562 * 7 6 5 28 28 H 1.09003 * 109.46872 * 299.99230 * 1 2 3 29 29 H 1.08994 * 109.46949 * 59.99791 * 1 2 3 30 30 H 1.08999 * 109.47124 * 179.97438 * 1 2 3 31 31 H 1.08004 * 120.01961 * 359.97041 * 4 3 2 32 32 H 1.08005 * 119.97465 * 180.29654 * 5 4 3 33 33 H 1.07997 * 119.94544 * 179.70324 * 6 5 4 34 34 H 1.09002 * 109.46856 * 30.01623 * 8 7 6 35 35 H 1.08993 * 109.46938 * 150.01707 * 8 7 6 36 36 H 0.97003 * 120.00019 * 354.98789 * 11 9 8 37 37 H 1.09002 * 109.47518 * 59.99689 * 13 12 11 38 38 H 1.09001 * 109.47114 * 179.97438 * 13 12 11 39 39 H 1.09001 * 109.47179 * 299.99473 * 13 12 11 40 40 H 1.09000 * 109.46863 * 179.97438 * 14 12 11 41 41 H 1.08992 * 109.47234 * 299.99809 * 14 12 11 42 42 H 0.96997 * 120.00420 * 359.97438 * 15 14 12 43 43 H 0.97000 * 119.99566 * 180.02562 * 19 18 16 44 44 H 1.08998 * 115.55792 * 278.41765 * 24 12 11 45 45 H 1.09000 * 117.49861 * 0.02562 * 25 24 12 46 46 H 1.09000 * 117.50022 * 145.02248 * 25 24 12 47 47 H 1.09002 * 117.49582 * 214.97883 * 26 24 12 48 48 H 1.09000 * 117.49963 * 359.97438 * 26 24 12 49 49 H 1.07997 * 120.02983 * 180.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 -0.0056 5 6 1.9208 3.6047 0.0007 6 6 3.3019 3.6758 0.0003 7 6 4.0560 2.5171 0.0001 8 6 5.5608 2.5982 -0.0010 9 6 6.0614 2.6254 -1.4221 10 8 5.2738 2.5826 -2.3434 11 7 7.3844 2.6962 -1.6694 12 6 7.8779 2.6118 -3.0462 13 6 7.3689 1.3218 -3.6923 14 6 7.3722 3.8157 -3.8437 15 7 7.8596 5.0509 -3.2250 16 6 7.5317 6.2644 -3.7683 17 1 6.9142 6.3108 -4.6531 18 6 7.9931 7.4349 -3.1818 19 7 8.7453 7.3784 -2.1031 20 14 7.5464 9.0903 -3.9233 21 1 6.2817 9.5788 -3.3177 22 1 8.6340 10.0641 -3.6514 23 1 7.3685 8.9437 -5.3903 24 6 9.4078 2.6102 -3.0404 25 6 10.1164 1.5587 -3.8966 26 6 10.1104 1.4270 -2.3716 27 6 3.4312 1.2848 -0.0002 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2128 2.3203 -0.0104 32 1 1.3340 4.5114 0.0012 33 1 3.7922 4.6381 0.0004 34 1 5.8761 3.5065 0.5126 35 1 5.9718 1.7291 0.5125 36 1 8.0099 2.8029 -0.9356 37 1 6.2789 1.3230 -3.6964 38 1 7.7357 1.2593 -4.7168 39 1 7.7292 0.4642 -3.1241 40 1 7.7397 3.7532 -4.8680 41 1 6.2823 3.8169 -3.8478 42 1 8.4139 5.0093 -2.4301 43 1 9.0674 8.1963 -1.6931 44 1 9.8788 3.5894 -2.9539 45 1 9.4925 0.8683 -4.4643 46 1 11.0536 1.8460 -4.3732 47 1 11.0438 1.6278 -1.8455 48 1 9.4827 0.6500 -1.9353 49 1 4.0207 0.3799 0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698651752.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:58 Heat of formation + Delta-G solvation = -6.347169 kcal Electronic energy + Delta-G solvation = -29067.678976 eV Core-core repulsion = 25189.520492 eV Total energy + Delta-G solvation = -3878.158484 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.35057 -39.81598 -38.08079 -37.11781 -34.60859 -33.36723 -32.62643 -31.11030 -30.46884 -29.63057 -27.65260 -27.00495 -25.77310 -23.61876 -22.53278 -22.34047 -22.01434 -21.51056 -19.89379 -18.72854 -17.78866 -17.12079 -16.97683 -16.32087 -15.96509 -15.83477 -15.66039 -15.15106 -14.83074 -14.46744 -14.11467 -13.96313 -13.70456 -13.45548 -13.18771 -13.15485 -12.72255 -12.48878 -12.33868 -12.10605 -12.05361 -11.95671 -11.73848 -11.44939 -11.28918 -11.10595 -10.99625 -10.82978 -10.77805 -10.75890 -10.69341 -10.14456 -10.05669 -9.77865 -9.62461 -9.27830 -8.80002 -8.68151 -8.48097 -8.14100 -6.79806 -5.70648 -2.96132 1.34641 1.53725 3.10572 3.17940 3.43019 3.47606 3.52814 3.54449 3.87335 4.19816 4.65682 4.70118 4.77465 4.84223 4.95461 4.97974 5.05341 5.13445 5.17338 5.22033 5.26392 5.27986 5.42593 5.45170 5.51436 5.52964 5.63227 5.65407 5.72842 5.77198 5.85793 6.01092 6.08147 6.10932 6.27138 6.30281 6.30837 6.33085 6.50053 6.51057 6.63607 6.68600 6.74560 6.78223 6.98799 7.20315 7.37312 7.78056 8.01322 8.49413 8.72857 9.60760 10.19560 10.55716 11.52652 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.009805 B = 0.003630 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2854.916861 B = 7712.234963 C = 9815.182322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.320 6.320 3 C 0.121 3.879 4 C -0.211 4.211 5 C -0.080 4.080 6 C -0.135 4.135 7 C -0.019 4.019 8 C -0.106 4.106 9 C 0.523 3.477 10 O -0.526 6.526 11 N -0.711 5.711 12 C 0.203 3.797 13 C -0.164 4.164 14 C 0.145 3.855 15 N -0.725 5.725 16 C -0.227 4.227 17 H 0.068 0.932 18 C -0.017 4.017 19 N -0.937 5.937 20 Si 0.904 3.096 21 H -0.291 1.291 22 H -0.293 1.293 23 H -0.283 1.283 24 C -0.149 4.149 25 C -0.174 4.174 26 C -0.182 4.182 27 C -0.137 4.137 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.097 0.903 31 H 0.123 0.877 32 H 0.124 0.876 33 H 0.126 0.874 34 H 0.106 0.894 35 H 0.100 0.900 36 H 0.397 0.603 37 H 0.080 0.920 38 H 0.064 0.936 39 H 0.051 0.949 40 H 0.021 0.979 41 H 0.045 0.955 42 H 0.382 0.618 43 H 0.252 0.748 44 H 0.122 0.878 45 H 0.099 0.901 46 H 0.092 0.908 47 H 0.091 0.909 48 H 0.091 0.909 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.364 -16.447 7.000 19.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.234 6.234 3 C 0.077 3.923 4 C -0.230 4.230 5 C -0.098 4.098 6 C -0.153 4.153 7 C -0.019 4.019 8 C -0.146 4.146 9 C 0.308 3.692 10 O -0.402 6.402 11 N -0.362 5.362 12 C 0.118 3.882 13 C -0.222 4.222 14 C 0.016 3.984 15 N -0.370 5.370 16 C -0.359 4.359 17 H 0.086 0.914 18 C -0.212 4.212 19 N -0.587 5.587 20 Si 0.736 3.264 21 H -0.219 1.219 22 H -0.219 1.219 23 H -0.209 1.209 24 C -0.168 4.168 25 C -0.211 4.211 26 C -0.219 4.219 27 C -0.156 4.156 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.115 0.885 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.144 0.856 34 H 0.125 0.875 35 H 0.118 0.882 36 H 0.231 0.769 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.039 0.961 41 H 0.063 0.937 42 H 0.216 0.784 43 H 0.062 0.938 44 H 0.139 0.861 45 H 0.117 0.883 46 H 0.110 0.890 47 H 0.110 0.890 48 H 0.110 0.890 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -8.925 -16.565 6.198 19.811 hybrid contribution 0.078 1.342 0.206 1.360 sum -8.847 -15.223 6.404 18.736 Atomic orbital electron populations 1.23009 0.78727 1.03616 1.01275 1.86046 1.21115 1.27189 1.89060 1.18898 0.92191 0.83970 0.97282 1.21158 0.99669 0.92500 1.09635 1.20882 0.94561 0.96894 0.97458 1.21010 0.93782 0.98300 1.02243 1.19046 0.93876 0.92395 0.96608 1.20719 0.92611 1.05279 0.96001 1.20158 0.82302 0.76127 0.90569 1.90660 1.55151 1.48645 1.45777 1.45904 1.06900 1.74557 1.08836 1.19985 0.90419 0.96015 0.81793 1.22276 1.03761 0.95908 1.00262 1.21059 0.98163 0.85102 0.94031 1.42229 1.61493 1.00080 1.33149 1.19246 1.24944 0.84039 1.07664 0.91434 1.24661 1.00910 0.97477 0.98146 1.69649 1.40096 1.26686 1.22274 0.86217 0.77341 0.84410 0.78452 1.21903 1.21923 1.20876 1.22572 0.93387 0.95733 1.05068 1.23054 1.02283 1.02322 0.93449 1.22938 1.02397 1.01111 0.95484 1.20155 0.91251 0.97892 1.06301 0.92823 0.92722 0.88493 0.85863 0.85834 0.85597 0.87544 0.88220 0.76870 0.90158 0.91730 0.93047 0.96101 0.93724 0.78449 0.93771 0.86052 0.88313 0.88961 0.89007 0.89042 0.85617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.32 -3.92 10.50 -19.40 -0.20 -4.13 16 3 C 0.12 1.63 6.69 -39.21 -0.26 1.37 16 4 C -0.21 -2.60 9.04 -39.43 -0.36 -2.96 16 5 C -0.08 -1.04 10.04 -39.61 -0.40 -1.43 16 6 C -0.14 -1.96 9.70 -39.56 -0.38 -2.34 16 7 C -0.02 -0.27 4.37 -104.64 -0.46 -0.72 16 8 C -0.11 -1.37 5.83 -29.03 -0.17 -1.53 16 9 C 0.52 8.59 7.23 -10.99 -0.08 8.51 16 10 O -0.53 -10.57 12.27 5.56 0.07 -10.50 16 11 N -0.71 -10.97 4.73 -47.61 -0.23 -11.19 16 12 C 0.20 3.38 0.54 -131.82 -0.07 3.31 16 13 C -0.16 -2.45 6.98 37.15 0.26 -2.19 16 14 C 0.14 3.13 5.03 -4.04 -0.02 3.11 16 15 N -0.73 -18.38 5.04 -59.91 -0.30 -18.69 16 16 C -0.23 -6.51 9.99 -15.06 -0.15 -6.66 16 17 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 18 C -0.02 -0.49 5.50 -17.43 -0.10 -0.58 16 19 N -0.94 -28.07 13.06 55.49 0.72 -27.34 16 20 Si 0.90 22.89 29.55 -169.99 -5.02 17.87 16 21 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 22 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 23 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 24 C -0.15 -2.27 4.84 -90.62 -0.44 -2.71 16 25 C -0.17 -2.21 9.64 -26.69 -0.26 -2.47 16 26 C -0.18 -2.17 9.82 -26.69 -0.26 -2.44 16 27 C -0.14 -1.90 9.64 -39.43 -0.38 -2.28 16 28 H 0.05 0.36 7.67 -51.93 -0.40 -0.04 16 29 H 0.05 0.41 7.65 -51.93 -0.40 0.01 16 30 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.12 1.20 6.30 -52.48 -0.33 0.87 16 32 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 33 H 0.13 1.83 8.06 -52.49 -0.42 1.41 16 34 H 0.11 1.28 8.09 -51.93 -0.42 0.86 16 35 H 0.10 0.98 8.08 -51.93 -0.42 0.56 16 36 H 0.40 5.33 8.48 -40.82 -0.35 4.99 16 37 H 0.08 1.37 6.03 -51.93 -0.31 1.06 16 38 H 0.06 0.90 6.78 -51.93 -0.35 0.55 16 39 H 0.05 0.67 6.99 -51.93 -0.36 0.31 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.04 1.08 6.32 -51.93 -0.33 0.76 16 42 H 0.38 9.85 6.62 -40.82 -0.27 9.58 16 43 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 44 H 0.12 2.22 7.08 -51.93 -0.37 1.85 16 45 H 0.10 1.18 5.88 -51.93 -0.31 0.87 16 46 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 47 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 48 H 0.09 1.01 7.35 -51.93 -0.38 0.63 16 49 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 393.36 15.07 5.93 5.93 Total: -1.00 -34.09 393.36 -9.06 -43.15 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: -7.50 Total: 15.70 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: -2.53 Total: -10.80 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: 0.20 Total: -57.22 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.14 Total: -14.63 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.09 -9.06 -43.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698651752.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.803 kcal (2) G-P(sol) polarization free energy of solvation -34.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds