Wall clock time and date at job start Tue Mar 31 2020 16:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35892 * 116.99752 * 2 1 4 4 C 1.38761 * 120.06100 * 359.73294 * 3 2 1 5 5 C 1.38113 * 119.94581 * 179.69839 * 4 3 2 6 6 C 1.38294 * 120.05709 * 0.59040 * 5 4 3 7 7 C 1.38242 * 120.10863 * 359.68488 * 6 5 4 8 8 C 1.50704 * 119.97152 * 179.97438 * 7 6 5 9 9 C 1.50696 * 109.47022 * 270.02353 * 8 7 6 10 10 O 1.21280 * 119.99969 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99946 * 180.02562 * 9 8 7 12 12 C 1.46501 * 120.00028 * 174.98221 * 11 9 8 13 13 C 1.52989 * 109.47415 * 304.29701 * 12 11 9 14 14 C 1.53005 * 109.46704 * 64.29792 * 12 11 9 15 15 N 1.46501 * 109.47036 * 59.99910 * 14 12 11 16 16 C 1.36936 * 119.99770 * 180.02562 * 15 14 12 17 17 H 1.08005 * 120.00318 * 359.97438 * 16 15 14 18 18 C 1.38814 * 120.00205 * 179.97438 * 16 15 14 19 19 N 1.31627 * 119.99576 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00199 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.46815 * 90.00160 * 20 18 16 22 22 H 1.48497 * 109.47130 * 209.99805 * 20 18 16 23 23 H 1.48497 * 109.47136 * 330.00301 * 20 18 16 24 24 C 1.52998 * 109.47029 * 184.29117 * 12 11 9 25 25 C 1.53001 * 117.49663 * 132.73945 * 24 12 11 26 26 C 1.53004 * 117.49478 * 64.08522 * 24 12 11 27 27 C 1.38169 * 120.05941 * 0.02562 * 7 6 5 28 28 H 1.09003 * 109.46872 * 299.99230 * 1 2 3 29 29 H 1.08994 * 109.46949 * 59.99791 * 1 2 3 30 30 H 1.08999 * 109.47124 * 179.97438 * 1 2 3 31 31 H 1.08004 * 120.01961 * 359.97041 * 4 3 2 32 32 H 1.08005 * 119.97465 * 180.29654 * 5 4 3 33 33 H 1.07997 * 119.94544 * 179.70324 * 6 5 4 34 34 H 1.09002 * 109.46856 * 30.01623 * 8 7 6 35 35 H 1.08993 * 109.46938 * 150.01707 * 8 7 6 36 36 H 0.97003 * 120.00019 * 354.98789 * 11 9 8 37 37 H 1.09002 * 109.47518 * 59.99689 * 13 12 11 38 38 H 1.09001 * 109.47114 * 179.97438 * 13 12 11 39 39 H 1.09001 * 109.47179 * 299.99473 * 13 12 11 40 40 H 1.09000 * 109.46863 * 179.97438 * 14 12 11 41 41 H 1.08992 * 109.47234 * 299.99809 * 14 12 11 42 42 H 0.96997 * 120.00420 * 359.97438 * 15 14 12 43 43 H 0.97000 * 119.99566 * 180.02562 * 19 18 16 44 44 H 1.08998 * 115.55792 * 278.41765 * 24 12 11 45 45 H 1.09000 * 117.49861 * 0.02562 * 25 24 12 46 46 H 1.09000 * 117.50022 * 145.02248 * 25 24 12 47 47 H 1.09002 * 117.49582 * 214.97883 * 26 24 12 48 48 H 1.09000 * 117.49963 * 359.97438 * 26 24 12 49 49 H 1.07997 * 120.02983 * 180.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 -0.0056 5 6 1.9208 3.6047 0.0007 6 6 3.3019 3.6758 0.0003 7 6 4.0560 2.5171 0.0001 8 6 5.5608 2.5982 -0.0010 9 6 6.0614 2.6254 -1.4221 10 8 5.2738 2.5826 -2.3434 11 7 7.3844 2.6962 -1.6694 12 6 7.8779 2.6118 -3.0462 13 6 7.3689 1.3218 -3.6923 14 6 7.3722 3.8157 -3.8437 15 7 7.8596 5.0509 -3.2250 16 6 7.5317 6.2644 -3.7683 17 1 6.9142 6.3108 -4.6531 18 6 7.9931 7.4349 -3.1818 19 7 8.7453 7.3784 -2.1031 20 14 7.5464 9.0903 -3.9233 21 1 6.2817 9.5788 -3.3177 22 1 8.6340 10.0641 -3.6514 23 1 7.3685 8.9437 -5.3903 24 6 9.4078 2.6102 -3.0404 25 6 10.1164 1.5587 -3.8966 26 6 10.1104 1.4270 -2.3716 27 6 3.4312 1.2848 -0.0002 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2128 2.3203 -0.0104 32 1 1.3340 4.5114 0.0012 33 1 3.7922 4.6381 0.0004 34 1 5.8761 3.5065 0.5126 35 1 5.9718 1.7291 0.5125 36 1 8.0099 2.8029 -0.9356 37 1 6.2789 1.3230 -3.6964 38 1 7.7357 1.2593 -4.7168 39 1 7.7292 0.4642 -3.1241 40 1 7.7397 3.7532 -4.8680 41 1 6.2823 3.8169 -3.8478 42 1 8.4139 5.0093 -2.4301 43 1 9.0674 8.1963 -1.6931 44 1 9.8788 3.5894 -2.9539 45 1 9.4925 0.8683 -4.4643 46 1 11.0536 1.8460 -4.3732 47 1 11.0438 1.6278 -1.8455 48 1 9.4827 0.6500 -1.9353 49 1 4.0207 0.3799 0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698651752.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:56 Heat of formation + Delta-G solvation = -27.999661 kcal Electronic energy + Delta-G solvation = -29068.617898 eV Core-core repulsion = 25189.520492 eV Total energy + Delta-G solvation = -3879.097406 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -41.50896 -40.90212 -39.20877 -38.17740 -36.35219 -34.91620 -33.77017 -32.87905 -31.51901 -31.07849 -28.59960 -27.86260 -27.52750 -25.13181 -24.10188 -23.53137 -23.12635 -22.53671 -21.05030 -20.09745 -19.22992 -18.74682 -18.16705 -17.25590 -17.01369 -16.93928 -16.75515 -16.59397 -16.22726 -15.98611 -15.47124 -15.17521 -14.98678 -14.91682 -14.54558 -14.20340 -14.15518 -13.79889 -13.65338 -13.40080 -13.24424 -13.09520 -12.89858 -12.81345 -12.72751 -12.47937 -12.38066 -12.20209 -12.03124 -11.99977 -11.94257 -11.75590 -11.72402 -11.21974 -11.05407 -10.90361 -10.49972 -9.86208 -9.76207 -9.14053 -8.93097 -7.94705 -5.20349 0.33251 0.50311 1.44221 1.45571 1.53986 1.83444 2.22796 2.39595 2.55452 2.83275 3.10789 3.37935 3.64726 3.71086 3.87332 3.91964 3.97999 4.08500 4.12941 4.19517 4.26707 4.27195 4.37279 4.39980 4.40358 4.49088 4.54131 4.64800 4.69122 4.73488 4.80069 4.81299 4.89052 4.93387 5.01009 5.04869 5.09914 5.15807 5.31436 5.32627 5.35061 5.45832 5.47431 5.49611 5.65454 5.77271 5.79846 6.28177 6.46926 6.77894 7.35544 7.47257 8.10511 8.39937 9.28142 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.009805 B = 0.003630 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2854.916861 B = 7712.234963 C = 9815.182322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.335 6.335 3 C 0.114 3.886 4 C -0.212 4.212 5 C -0.086 4.086 6 C -0.162 4.162 7 C -0.029 4.029 8 C -0.099 4.099 9 C 0.516 3.484 10 O -0.567 6.567 11 N -0.705 5.705 12 C 0.213 3.787 13 C -0.153 4.153 14 C 0.147 3.853 15 N -0.727 5.727 16 C -0.244 4.244 17 H 0.060 0.940 18 C -0.067 4.067 19 N -0.962 5.962 20 Si 0.966 3.034 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.276 1.276 24 C -0.175 4.175 25 C -0.167 4.167 26 C -0.152 4.152 27 C -0.152 4.152 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.120 0.880 31 H 0.150 0.850 32 H 0.142 0.858 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.135 0.865 36 H 0.408 0.592 37 H 0.056 0.944 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.013 0.987 41 H 0.016 0.984 42 H 0.378 0.622 43 H 0.251 0.749 44 H 0.086 0.914 45 H 0.110 0.890 46 H 0.097 0.903 47 H 0.104 0.896 48 H 0.108 0.892 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.544 -18.002 7.602 21.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.249 6.249 3 C 0.069 3.931 4 C -0.230 4.230 5 C -0.104 4.104 6 C -0.180 4.180 7 C -0.030 4.030 8 C -0.139 4.139 9 C 0.304 3.696 10 O -0.446 6.446 11 N -0.356 5.356 12 C 0.127 3.873 13 C -0.212 4.212 14 C 0.020 3.980 15 N -0.370 5.370 16 C -0.376 4.376 17 H 0.078 0.922 18 C -0.260 4.260 19 N -0.613 5.613 20 Si 0.796 3.204 21 H -0.217 1.217 22 H -0.216 1.216 23 H -0.201 1.201 24 C -0.194 4.194 25 C -0.204 4.204 26 C -0.189 4.189 27 C -0.171 4.171 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.138 0.862 31 H 0.168 0.832 32 H 0.160 0.840 33 H 0.133 0.867 34 H 0.131 0.869 35 H 0.153 0.847 36 H 0.244 0.756 37 H 0.075 0.925 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.031 0.969 41 H 0.034 0.966 42 H 0.211 0.789 43 H 0.060 0.940 44 H 0.104 0.896 45 H 0.129 0.871 46 H 0.116 0.884 47 H 0.122 0.878 48 H 0.127 0.873 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.100 -18.143 6.807 21.408 hybrid contribution 0.061 1.790 -0.017 1.791 sum -9.039 -16.353 6.790 19.881 Atomic orbital electron populations 1.23334 0.76534 1.05555 1.02152 1.86029 1.23431 1.26646 1.88830 1.19097 0.92391 0.84816 0.96810 1.21450 1.01067 0.91823 1.08710 1.21158 0.94211 0.98134 0.96878 1.21135 0.94848 0.98131 1.03917 1.19191 0.94494 0.92502 0.96809 1.20742 0.92118 1.07182 0.93813 1.20799 0.82149 0.75044 0.91639 1.90645 1.56126 1.50486 1.47356 1.45900 1.07020 1.73939 1.08773 1.19763 0.91478 0.94295 0.81789 1.22178 1.02170 0.95693 1.01114 1.21073 0.96317 0.86142 0.94510 1.42269 1.61284 1.00470 1.32998 1.19522 1.24758 0.85657 1.07625 0.92179 1.25387 1.01216 1.00597 0.98790 1.69778 1.40929 1.27298 1.23256 0.85244 0.76906 0.80251 0.78005 1.21677 1.21630 1.20087 1.22247 0.92117 0.95531 1.09464 1.23181 1.02091 1.00747 0.94361 1.23026 1.02201 0.98620 0.95055 1.20345 0.91967 0.98028 1.06711 0.91446 0.92257 0.86178 0.83204 0.84013 0.86712 0.86926 0.84678 0.75610 0.92491 0.90833 0.90383 0.96931 0.96635 0.78854 0.93993 0.89602 0.87139 0.88415 0.87758 0.87326 0.84777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.37 16 2 O -0.34 -7.77 10.50 -92.33 -0.97 -8.74 16 3 C 0.11 2.97 6.69 22.51 0.15 3.12 16 4 C -0.21 -5.01 9.04 22.37 0.20 -4.81 16 5 C -0.09 -2.21 10.04 22.25 0.22 -1.99 16 6 C -0.16 -4.82 9.70 22.28 0.22 -4.60 16 7 C -0.03 -0.84 4.37 -19.88 -0.09 -0.93 16 8 C -0.10 -2.51 5.83 29.10 0.17 -2.34 16 9 C 0.52 17.11 7.23 87.66 0.63 17.75 16 10 O -0.57 -23.52 12.27 -3.03 -0.04 -23.56 16 11 N -0.71 -21.61 4.73 -422.93 -2.00 -23.60 16 12 C 0.21 7.07 0.54 3.60 0.00 7.07 16 13 C -0.15 -4.44 6.98 71.98 0.50 -3.94 16 14 C 0.15 6.62 5.03 86.38 0.43 7.06 16 15 N -0.73 -38.14 5.04 -343.44 -1.73 -39.87 16 16 C -0.24 -14.31 9.99 84.03 0.84 -13.47 16 17 H 0.06 3.54 7.83 -2.91 -0.02 3.52 16 18 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 19 N -0.96 -58.40 13.06 21.65 0.28 -58.11 16 20 Si 0.97 47.58 29.55 68.60 2.03 49.60 16 21 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 22 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 23 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 24 C -0.17 -5.20 4.84 -10.79 -0.05 -5.25 16 25 C -0.17 -3.86 9.64 30.62 0.30 -3.57 16 26 C -0.15 -3.19 9.82 30.62 0.30 -2.89 16 27 C -0.15 -4.16 9.64 22.37 0.22 -3.94 16 28 H 0.07 0.74 7.67 -2.39 -0.02 0.72 16 29 H 0.06 0.76 7.65 -2.39 -0.02 0.74 16 30 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.15 2.60 6.30 -2.91 -0.02 2.58 16 32 H 0.14 2.97 8.06 -2.91 -0.02 2.95 16 33 H 0.11 3.54 8.06 -2.91 -0.02 3.51 16 34 H 0.11 2.69 8.09 -2.39 -0.02 2.67 16 35 H 0.14 2.38 8.08 -2.39 -0.02 2.37 16 36 H 0.41 10.63 8.48 -92.71 -0.79 9.84 16 37 H 0.06 1.96 6.03 -2.39 -0.01 1.94 16 38 H 0.07 1.97 6.78 -2.39 -0.02 1.95 16 39 H 0.08 1.84 6.99 -2.39 -0.02 1.82 16 40 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.02 0.80 6.32 -2.39 -0.02 0.79 16 42 H 0.38 20.16 6.62 -92.71 -0.61 19.55 16 43 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 44 H 0.09 3.22 7.08 -2.39 -0.02 3.20 16 45 H 0.11 2.32 5.88 -2.39 -0.01 2.30 16 46 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 47 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 48 H 0.11 1.96 7.35 -2.39 -0.02 1.94 16 49 H 0.13 3.29 8.06 -2.91 -0.02 3.27 16 Total: -1.00 -75.69 393.36 2.78 -72.91 By element: Atomic # 1 Polarization: 46.64 SS G_CDS: -0.43 Total: 46.21 kcal Atomic # 6 Polarization: -20.47 SS G_CDS: 5.63 Total: -14.85 kcal Atomic # 7 Polarization: -118.14 SS G_CDS: -3.45 Total: -121.59 kcal Atomic # 8 Polarization: -31.29 SS G_CDS: -1.01 Total: -32.30 kcal Atomic # 14 Polarization: 47.58 SS G_CDS: 2.03 Total: 49.60 kcal Total: -75.69 2.78 -72.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698651752.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.911 kcal (2) G-P(sol) polarization free energy of solvation -75.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds