Wall clock time and date at job start Tue Mar 31 2020 16:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35897 * 117.00037 * 2 1 4 4 C 1.38754 * 120.05696 * 0.02562 * 3 2 1 5 5 C 1.38117 * 119.94330 * 179.97438 * 4 3 2 6 6 C 1.38289 * 120.05678 * 359.75129 * 5 4 3 7 7 C 1.38245 * 120.11250 * 0.50475 * 6 5 4 8 8 C 1.50701 * 119.97317 * 179.77228 * 7 6 5 9 9 C 1.50698 * 109.46885 * 269.72074 * 8 7 6 10 10 O 1.21290 * 119.99834 * 0.02562 * 9 8 7 11 11 N 1.34772 * 120.00296 * 179.97438 * 9 8 7 12 12 C 1.46494 * 120.00318 * 185.19000 * 11 9 8 13 13 C 1.53005 * 109.47145 * 183.95049 * 12 11 9 14 14 C 1.52999 * 109.46969 * 63.95184 * 12 11 9 15 15 N 1.46500 * 109.47030 * 59.99927 * 14 12 11 16 16 C 1.36937 * 120.00138 * 180.02562 * 15 14 12 17 17 H 1.08003 * 120.00269 * 359.97438 * 16 15 14 18 18 C 1.38808 * 120.00284 * 180.02562 * 16 15 14 19 19 N 1.31617 * 119.99832 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00092 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47180 * 59.99840 * 20 18 16 22 22 H 1.48500 * 109.46983 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47249 * 299.99263 * 20 18 16 24 24 C 1.52998 * 109.47600 * 303.95445 * 12 11 9 25 25 C 1.53001 * 117.51697 * 228.44987 * 24 12 11 26 26 C 1.53005 * 117.49462 * 297.07847 * 24 12 11 27 27 C 1.38169 * 120.05135 * 359.49179 * 7 6 5 28 28 H 1.09000 * 109.47104 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47026 * 299.99880 * 1 2 3 30 30 H 1.08995 * 109.47439 * 59.99302 * 1 2 3 31 31 H 1.07993 * 120.02779 * 359.97438 * 4 3 2 32 32 H 1.08004 * 119.97304 * 180.02562 * 5 4 3 33 33 H 1.08001 * 119.94601 * 180.27437 * 6 5 4 34 34 H 1.09002 * 109.47141 * 149.72655 * 8 7 6 35 35 H 1.08998 * 109.47178 * 29.72223 * 8 7 6 36 36 H 0.97001 * 119.99979 * 5.20019 * 11 9 8 37 37 H 1.09003 * 109.46706 * 180.02562 * 13 12 11 38 38 H 1.09000 * 109.47099 * 299.99868 * 13 12 11 39 39 H 1.08993 * 109.46980 * 60.00226 * 13 12 11 40 40 H 1.09004 * 109.47388 * 179.97438 * 14 12 11 41 41 H 1.08993 * 109.47268 * 299.99898 * 14 12 11 42 42 H 0.96996 * 120.00435 * 359.97438 * 15 14 12 43 43 H 0.97008 * 119.99757 * 180.02562 * 19 18 16 44 44 H 1.08999 * 115.55380 * 82.74298 * 24 12 11 45 45 H 1.09002 * 117.50163 * 214.96480 * 25 24 12 46 46 H 1.08997 * 117.50077 * 359.97438 * 25 24 12 47 47 H 1.08998 * 117.49808 * 359.97048 * 26 24 12 48 48 H 1.08999 * 117.49677 * 145.00112 * 26 24 12 49 49 H 1.08001 * 120.02436 * 180.23474 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9209 3.6047 0.0011 6 6 3.3020 3.6757 0.0063 7 6 4.0561 2.5170 0.0004 8 6 5.5609 2.5981 0.0009 9 6 6.0629 2.6254 -1.4198 10 8 5.2760 2.5837 -2.3419 11 7 7.3860 2.6973 -1.6657 12 6 7.8687 2.8385 -3.0416 13 6 9.3982 2.7972 -3.0523 14 6 7.3906 4.1738 -3.6153 15 7 7.9144 5.2716 -2.7988 16 6 7.6158 6.5684 -3.1222 17 1 6.9945 6.7818 -3.9794 18 6 8.1126 7.6086 -2.3489 19 7 8.8703 7.3485 -1.3046 20 14 7.7058 9.3775 -2.7905 21 1 6.2342 9.5718 -2.7504 22 1 8.3521 10.2922 -1.8154 23 1 8.2075 9.6747 -4.1562 24 6 7.3217 1.6920 -3.8943 25 6 8.3132 0.9333 -4.7787 26 6 7.7460 0.2699 -3.5220 27 6 3.4311 1.2847 -0.0001 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 0.2129 2.3204 0.0005 32 1 1.3341 4.5114 0.0019 33 1 3.7923 4.6379 0.0112 34 1 5.9714 1.7287 0.5146 35 1 5.8757 3.5061 0.5151 36 1 8.0188 2.6553 -0.9317 37 1 9.7573 2.9028 -4.0760 38 1 9.7879 3.6141 -2.4449 39 1 9.7388 1.8459 -2.6436 40 1 7.7501 4.2792 -4.6389 41 1 6.3011 4.2033 -3.6077 42 1 8.4722 5.0801 -2.0287 43 1 9.2171 8.0755 -0.7640 44 1 6.3106 1.8316 -4.2769 45 1 7.9545 0.5737 -5.7432 46 1 9.3555 1.2511 -4.7535 47 1 8.4152 0.1512 -2.6699 48 1 7.0141 -0.5260 -3.6598 49 1 4.0207 0.3798 -0.0008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698651753.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:02 Heat of formation + Delta-G solvation = -7.045142 kcal Electronic energy + Delta-G solvation = -29172.660985 eV Core-core repulsion = 25294.472235 eV Total energy + Delta-G solvation = -3878.188750 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.32390 -39.79749 -38.00056 -37.00042 -34.90631 -33.35601 -32.53709 -31.16042 -30.44928 -29.35120 -27.64535 -27.01170 -26.05335 -23.78800 -22.54741 -22.31683 -21.68328 -21.28620 -20.18885 -18.63193 -17.79355 -17.21761 -16.72657 -16.30713 -15.94130 -15.92446 -15.79623 -15.13879 -14.71959 -14.47298 -14.11672 -13.97435 -13.65529 -13.49026 -13.17931 -13.12868 -12.82291 -12.52003 -12.32999 -12.10446 -12.04067 -11.90241 -11.60042 -11.41632 -11.21739 -11.09322 -11.01632 -10.86108 -10.80635 -10.77787 -10.56298 -10.21035 -10.13205 -9.85041 -9.61391 -9.24402 -8.81372 -8.69065 -8.48166 -8.12217 -6.83865 -5.73100 -2.99096 1.36858 1.55731 3.13792 3.20187 3.46275 3.48123 3.50771 3.52483 3.89794 4.23422 4.61285 4.72680 4.79363 4.85509 4.96482 4.99217 5.07834 5.15101 5.18227 5.24737 5.28311 5.37755 5.44013 5.48778 5.51973 5.54233 5.63487 5.67887 5.72631 5.77481 5.81023 5.98867 6.06296 6.10644 6.26617 6.28588 6.32671 6.33651 6.52565 6.58719 6.62402 6.66531 6.71582 6.79776 6.95095 7.16406 7.38974 7.75296 8.01034 8.46913 8.75673 9.58265 10.16338 10.52497 11.50062 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.009618 B = 0.003780 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2910.416238 B = 7405.228226 C = 9603.351220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.321 6.321 3 C 0.121 3.879 4 C -0.212 4.212 5 C -0.080 4.080 6 C -0.135 4.135 7 C -0.017 4.017 8 C -0.107 4.107 9 C 0.527 3.473 10 O -0.527 6.527 11 N -0.712 5.712 12 C 0.202 3.798 13 C -0.154 4.154 14 C 0.147 3.853 15 N -0.726 5.726 16 C -0.230 4.230 17 H 0.067 0.933 18 C -0.015 4.015 19 N -0.937 5.937 20 Si 0.905 3.095 21 H -0.287 1.287 22 H -0.292 1.292 23 H -0.287 1.287 24 C -0.139 4.139 25 C -0.185 4.185 26 C -0.174 4.174 27 C -0.137 4.137 28 H 0.096 0.904 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.127 0.873 34 H 0.098 0.902 35 H 0.108 0.892 36 H 0.396 0.604 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.052 0.948 40 H 0.024 0.976 41 H 0.038 0.962 42 H 0.382 0.618 43 H 0.254 0.746 44 H 0.115 0.885 45 H 0.088 0.912 46 H 0.099 0.901 47 H 0.089 0.911 48 H 0.086 0.914 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.162 -16.506 4.117 19.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.234 6.234 3 C 0.076 3.924 4 C -0.230 4.230 5 C -0.098 4.098 6 C -0.154 4.154 7 C -0.018 4.018 8 C -0.147 4.147 9 C 0.313 3.687 10 O -0.403 6.403 11 N -0.363 5.363 12 C 0.116 3.884 13 C -0.212 4.212 14 C 0.019 3.981 15 N -0.370 5.370 16 C -0.362 4.362 17 H 0.085 0.915 18 C -0.211 4.211 19 N -0.587 5.587 20 Si 0.736 3.264 21 H -0.214 1.214 22 H -0.218 1.218 23 H -0.214 1.214 24 C -0.159 4.159 25 C -0.222 4.222 26 C -0.212 4.212 27 C -0.156 4.156 28 H 0.115 0.885 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.141 0.859 32 H 0.141 0.859 33 H 0.144 0.856 34 H 0.116 0.884 35 H 0.126 0.874 36 H 0.230 0.770 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.071 0.929 40 H 0.042 0.958 41 H 0.056 0.944 42 H 0.216 0.784 43 H 0.063 0.937 44 H 0.133 0.867 45 H 0.107 0.893 46 H 0.118 0.882 47 H 0.107 0.893 48 H 0.104 0.896 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -9.716 -16.555 3.358 19.488 hybrid contribution -0.024 1.193 0.356 1.245 sum -9.741 -15.362 3.714 18.566 Atomic orbital electron populations 1.23004 0.78760 1.03590 1.01264 1.86045 1.21088 1.27214 1.89078 1.18895 0.92191 0.83951 0.97326 1.21149 0.99637 0.92507 1.09737 1.20880 0.94567 0.96875 0.97481 1.21026 0.93768 0.98351 1.02210 1.19051 0.93914 0.92357 0.96465 1.20725 0.92558 1.05317 0.96084 1.20109 0.82351 0.75785 0.90495 1.90667 1.55225 1.48565 1.45862 1.45941 1.06788 1.74951 1.08650 1.19981 0.93265 0.94285 0.80822 1.22126 0.93762 1.01790 1.03512 1.20993 0.97738 0.85588 0.93819 1.42248 1.60832 1.01005 1.32953 1.19194 1.24891 0.83199 1.08904 0.91462 1.24659 1.00719 0.97672 0.98002 1.69633 1.39078 1.30903 1.19037 0.86295 0.77735 0.85074 0.77284 1.21401 1.21777 1.21386 1.22591 0.99951 0.91675 1.01681 1.23139 0.99579 1.04700 0.94802 1.22779 1.03538 0.95995 0.98842 1.20156 0.91232 0.97904 1.06310 0.88511 0.92829 0.92751 0.85895 0.85854 0.85551 0.88365 0.87362 0.77042 0.90809 0.90667 0.92896 0.95840 0.94416 0.78416 0.93664 0.86747 0.89311 0.88246 0.89270 0.89567 0.85640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.23 16 2 O -0.32 -3.98 10.50 -19.42 -0.20 -4.18 16 3 C 0.12 1.65 6.69 -39.22 -0.26 1.39 16 4 C -0.21 -2.65 9.04 -39.44 -0.36 -3.01 16 5 C -0.08 -1.06 10.04 -39.61 -0.40 -1.45 16 6 C -0.14 -2.00 9.70 -39.56 -0.38 -2.39 16 7 C -0.02 -0.25 4.37 -104.64 -0.46 -0.71 16 8 C -0.11 -1.42 5.83 -29.04 -0.17 -1.59 16 9 C 0.53 8.69 7.23 -10.99 -0.08 8.61 16 10 O -0.53 -10.51 12.86 5.55 0.07 -10.44 16 11 N -0.71 -10.89 4.71 -47.61 -0.22 -11.11 16 12 C 0.20 3.32 0.54 -131.82 -0.07 3.25 16 13 C -0.15 -2.28 7.04 37.16 0.26 -2.01 16 14 C 0.15 3.13 5.02 -4.04 -0.02 3.11 16 15 N -0.73 -18.10 5.17 -59.91 -0.31 -18.41 16 16 C -0.23 -6.51 9.99 -15.06 -0.15 -6.66 16 17 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 18 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 19 N -0.94 -27.73 13.06 55.49 0.72 -27.00 16 20 Si 0.90 22.64 29.55 -169.99 -5.02 17.61 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 C -0.14 -2.13 4.05 -90.62 -0.37 -2.50 16 25 C -0.18 -2.33 9.62 -26.73 -0.26 -2.59 16 26 C -0.17 -2.21 9.81 -26.73 -0.26 -2.47 16 27 C -0.14 -1.94 9.64 -39.43 -0.38 -2.32 16 28 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 30 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 31 H 0.12 1.21 6.30 -52.49 -0.33 0.88 16 32 H 0.12 1.36 8.06 -52.48 -0.42 0.93 16 33 H 0.13 1.90 8.06 -52.49 -0.42 1.48 16 34 H 0.10 1.00 8.08 -51.93 -0.42 0.58 16 35 H 0.11 1.40 8.08 -51.93 -0.42 0.98 16 36 H 0.40 5.14 8.48 -40.82 -0.35 4.79 16 37 H 0.07 1.07 6.84 -51.93 -0.36 0.72 16 38 H 0.07 1.26 6.86 -51.93 -0.36 0.91 16 39 H 0.05 0.64 7.01 -51.93 -0.36 0.28 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.04 0.91 6.64 -51.93 -0.34 0.56 16 42 H 0.38 9.66 6.35 -40.82 -0.26 9.40 16 43 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 44 H 0.11 2.03 7.18 -51.93 -0.37 1.66 16 45 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 46 H 0.10 1.18 5.87 -51.93 -0.31 0.88 16 47 H 0.09 1.06 7.42 -51.93 -0.39 0.67 16 48 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 49 H 0.13 1.62 8.06 -52.49 -0.42 1.19 16 LS Contribution 394.41 15.07 5.94 5.94 Total: -1.00 -33.69 394.41 -9.04 -42.73 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: -7.56 Total: 15.50 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: -2.46 Total: -10.64 kcal Atomic # 7 Polarization: -56.71 SS G_CDS: 0.19 Total: -56.52 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -0.13 Total: -14.62 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.69 -9.04 -42.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698651753.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.684 kcal (2) G-P(sol) polarization free energy of solvation -33.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds