Wall clock time and date at job start Tue Mar 31 2020 16:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35897 * 117.00037 * 2 1 4 4 C 1.38754 * 120.05696 * 0.02562 * 3 2 1 5 5 C 1.38117 * 119.94330 * 179.97438 * 4 3 2 6 6 C 1.38289 * 120.05678 * 359.75129 * 5 4 3 7 7 C 1.38245 * 120.11250 * 0.50475 * 6 5 4 8 8 C 1.50701 * 119.97317 * 179.77228 * 7 6 5 9 9 C 1.50698 * 109.46885 * 269.72074 * 8 7 6 10 10 O 1.21290 * 119.99834 * 0.02562 * 9 8 7 11 11 N 1.34772 * 120.00296 * 179.97438 * 9 8 7 12 12 C 1.46494 * 120.00318 * 185.19000 * 11 9 8 13 13 C 1.53005 * 109.47145 * 183.95049 * 12 11 9 14 14 C 1.52999 * 109.46969 * 63.95184 * 12 11 9 15 15 N 1.46500 * 109.47030 * 59.99927 * 14 12 11 16 16 C 1.36937 * 120.00138 * 180.02562 * 15 14 12 17 17 H 1.08003 * 120.00269 * 359.97438 * 16 15 14 18 18 C 1.38808 * 120.00284 * 180.02562 * 16 15 14 19 19 N 1.31617 * 119.99832 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00092 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47180 * 59.99840 * 20 18 16 22 22 H 1.48500 * 109.46983 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47249 * 299.99263 * 20 18 16 24 24 C 1.52998 * 109.47600 * 303.95445 * 12 11 9 25 25 C 1.53001 * 117.51697 * 228.44987 * 24 12 11 26 26 C 1.53005 * 117.49462 * 297.07847 * 24 12 11 27 27 C 1.38169 * 120.05135 * 359.49179 * 7 6 5 28 28 H 1.09000 * 109.47104 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47026 * 299.99880 * 1 2 3 30 30 H 1.08995 * 109.47439 * 59.99302 * 1 2 3 31 31 H 1.07993 * 120.02779 * 359.97438 * 4 3 2 32 32 H 1.08004 * 119.97304 * 180.02562 * 5 4 3 33 33 H 1.08001 * 119.94601 * 180.27437 * 6 5 4 34 34 H 1.09002 * 109.47141 * 149.72655 * 8 7 6 35 35 H 1.08998 * 109.47178 * 29.72223 * 8 7 6 36 36 H 0.97001 * 119.99979 * 5.20019 * 11 9 8 37 37 H 1.09003 * 109.46706 * 180.02562 * 13 12 11 38 38 H 1.09000 * 109.47099 * 299.99868 * 13 12 11 39 39 H 1.08993 * 109.46980 * 60.00226 * 13 12 11 40 40 H 1.09004 * 109.47388 * 179.97438 * 14 12 11 41 41 H 1.08993 * 109.47268 * 299.99898 * 14 12 11 42 42 H 0.96996 * 120.00435 * 359.97438 * 15 14 12 43 43 H 0.97008 * 119.99757 * 180.02562 * 19 18 16 44 44 H 1.08999 * 115.55380 * 82.74298 * 24 12 11 45 45 H 1.09002 * 117.50163 * 214.96480 * 25 24 12 46 46 H 1.08997 * 117.50077 * 359.97438 * 25 24 12 47 47 H 1.08998 * 117.49808 * 359.97048 * 26 24 12 48 48 H 1.08999 * 117.49677 * 145.00112 * 26 24 12 49 49 H 1.08001 * 120.02436 * 180.23474 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9209 3.6047 0.0011 6 6 3.3020 3.6757 0.0063 7 6 4.0561 2.5170 0.0004 8 6 5.5609 2.5981 0.0009 9 6 6.0629 2.6254 -1.4198 10 8 5.2760 2.5837 -2.3419 11 7 7.3860 2.6973 -1.6657 12 6 7.8687 2.8385 -3.0416 13 6 9.3982 2.7972 -3.0523 14 6 7.3906 4.1738 -3.6153 15 7 7.9144 5.2716 -2.7988 16 6 7.6158 6.5684 -3.1222 17 1 6.9945 6.7818 -3.9794 18 6 8.1126 7.6086 -2.3489 19 7 8.8703 7.3485 -1.3046 20 14 7.7058 9.3775 -2.7905 21 1 6.2342 9.5718 -2.7504 22 1 8.3521 10.2922 -1.8154 23 1 8.2075 9.6747 -4.1562 24 6 7.3217 1.6920 -3.8943 25 6 8.3132 0.9333 -4.7787 26 6 7.7460 0.2699 -3.5220 27 6 3.4311 1.2847 -0.0001 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 0.2129 2.3204 0.0005 32 1 1.3341 4.5114 0.0019 33 1 3.7923 4.6379 0.0112 34 1 5.9714 1.7287 0.5146 35 1 5.8757 3.5061 0.5151 36 1 8.0188 2.6553 -0.9317 37 1 9.7573 2.9028 -4.0760 38 1 9.7879 3.6141 -2.4449 39 1 9.7388 1.8459 -2.6436 40 1 7.7501 4.2792 -4.6389 41 1 6.3011 4.2033 -3.6077 42 1 8.4722 5.0801 -2.0287 43 1 9.2171 8.0755 -0.7640 44 1 6.3106 1.8316 -4.2769 45 1 7.9545 0.5737 -5.7432 46 1 9.3555 1.2511 -4.7535 47 1 8.4152 0.1512 -2.6699 48 1 7.0141 -0.5260 -3.6598 49 1 4.0207 0.3798 -0.0008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698651753.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:01 Heat of formation + Delta-G solvation = -28.256716 kcal Electronic energy + Delta-G solvation = -29173.580788 eV Core-core repulsion = 25294.472235 eV Total energy + Delta-G solvation = -3879.108553 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.48513 -40.90094 -39.12343 -38.10514 -36.56952 -34.96030 -33.70662 -32.90980 -31.46856 -30.86951 -28.61821 -27.89948 -27.65537 -25.59935 -23.63935 -23.44702 -22.89065 -22.63659 -21.34446 -20.02651 -19.22265 -18.73714 -17.95891 -17.30056 -17.16247 -16.96625 -16.76791 -16.61095 -16.26706 -15.87089 -15.45750 -15.18513 -15.01804 -14.83155 -14.61008 -14.39878 -14.18616 -13.70784 -13.56866 -13.38679 -13.23945 -12.97551 -12.91378 -12.79543 -12.68566 -12.48018 -12.39779 -12.18188 -12.08689 -11.98812 -11.95552 -11.75398 -11.70351 -11.32959 -11.01230 -10.94899 -10.47911 -9.84674 -9.76602 -9.14809 -8.94596 -7.94137 -5.20200 0.32851 0.49539 1.45702 1.47745 1.53977 1.86290 2.26008 2.39511 2.55973 2.83122 3.13430 3.38875 3.58680 3.70520 3.86698 3.96478 4.02968 4.11788 4.17548 4.20541 4.26368 4.30307 4.36121 4.38381 4.39530 4.40746 4.53681 4.56281 4.64816 4.72933 4.78143 4.79624 4.91116 4.95234 5.01414 5.04841 5.09423 5.17774 5.30850 5.31547 5.33043 5.44852 5.46878 5.48144 5.65408 5.76600 5.78959 6.28589 6.46333 6.78287 7.36410 7.50151 8.09856 8.40270 9.28312 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.009618 B = 0.003780 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2910.416238 B = 7405.228226 C = 9603.351220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.335 6.335 3 C 0.115 3.885 4 C -0.212 4.212 5 C -0.085 4.085 6 C -0.163 4.163 7 C -0.028 4.028 8 C -0.101 4.101 9 C 0.520 3.480 10 O -0.566 6.566 11 N -0.706 5.706 12 C 0.211 3.789 13 C -0.146 4.146 14 C 0.151 3.849 15 N -0.727 5.727 16 C -0.247 4.247 17 H 0.060 0.940 18 C -0.064 4.064 19 N -0.960 5.960 20 Si 0.966 3.034 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.280 1.280 24 C -0.164 4.164 25 C -0.170 4.170 26 C -0.156 4.156 27 C -0.152 4.152 28 H 0.120 0.880 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.151 0.849 32 H 0.142 0.858 33 H 0.113 0.887 34 H 0.133 0.867 35 H 0.109 0.891 36 H 0.409 0.591 37 H 0.076 0.924 38 H 0.053 0.947 39 H 0.087 0.913 40 H 0.017 0.983 41 H 0.006 0.994 42 H 0.379 0.621 43 H 0.252 0.748 44 H 0.082 0.918 45 H 0.098 0.902 46 H 0.112 0.888 47 H 0.105 0.895 48 H 0.090 0.910 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.195 -17.942 4.496 20.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.249 6.249 3 C 0.070 3.930 4 C -0.230 4.230 5 C -0.103 4.103 6 C -0.181 4.181 7 C -0.029 4.029 8 C -0.140 4.140 9 C 0.308 3.692 10 O -0.445 6.445 11 N -0.358 5.358 12 C 0.125 3.875 13 C -0.203 4.203 14 C 0.023 3.977 15 N -0.371 5.371 16 C -0.379 4.379 17 H 0.078 0.922 18 C -0.257 4.257 19 N -0.611 5.611 20 Si 0.795 3.205 21 H -0.211 1.211 22 H -0.215 1.215 23 H -0.207 1.207 24 C -0.183 4.183 25 C -0.207 4.207 26 C -0.193 4.193 27 C -0.170 4.170 28 H 0.138 0.862 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.169 0.831 32 H 0.160 0.840 33 H 0.131 0.869 34 H 0.151 0.849 35 H 0.128 0.872 36 H 0.244 0.756 37 H 0.095 0.905 38 H 0.072 0.928 39 H 0.106 0.894 40 H 0.035 0.965 41 H 0.024 0.976 42 H 0.213 0.787 43 H 0.061 0.939 44 H 0.100 0.900 45 H 0.116 0.884 46 H 0.130 0.870 47 H 0.123 0.877 48 H 0.109 0.891 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.742 -18.013 3.742 20.818 hybrid contribution -0.128 1.592 0.192 1.609 sum -9.871 -16.421 3.934 19.559 Atomic orbital electron populations 1.23336 0.76522 1.05563 1.02163 1.86029 1.23444 1.26628 1.88827 1.19086 0.92353 0.84829 0.96775 1.21442 1.01066 0.91775 1.08748 1.21154 0.94144 0.98167 0.96853 1.21126 0.94885 0.98069 1.04026 1.19184 0.94464 0.92507 0.96712 1.20741 0.92189 1.06934 0.94158 1.20682 0.82326 0.74831 0.91396 1.90652 1.56206 1.50301 1.47333 1.45908 1.06877 1.74234 1.08740 1.19759 0.94418 0.91924 0.81370 1.22061 0.91887 1.02774 1.03587 1.20986 0.95674 0.87565 0.93453 1.42284 1.60668 1.00930 1.33192 1.19468 1.24704 0.84915 1.08769 0.92203 1.25363 1.00976 1.01222 0.98151 1.69757 1.39850 1.31724 1.19732 0.85339 0.77421 0.80580 0.77174 1.21146 1.21545 1.20671 1.22297 0.99246 0.92952 1.03834 1.23253 0.99425 1.02843 0.95206 1.22851 1.03218 0.93829 0.99373 1.20331 0.91986 0.97968 1.06761 0.86161 0.91451 0.92236 0.83140 0.83995 0.86904 0.84870 0.87250 0.75558 0.90486 0.92811 0.89442 0.96544 0.97620 0.78674 0.93918 0.89992 0.88356 0.86954 0.87664 0.89131 0.84841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.37 16 2 O -0.34 -7.88 10.50 -92.39 -0.97 -8.85 16 3 C 0.11 3.05 6.69 22.51 0.15 3.20 16 4 C -0.21 -5.10 9.04 22.36 0.20 -4.89 16 5 C -0.09 -2.25 10.04 22.25 0.22 -2.02 16 6 C -0.16 -4.99 9.70 22.28 0.22 -4.78 16 7 C -0.03 -0.83 4.37 -19.88 -0.09 -0.92 16 8 C -0.10 -2.68 5.83 29.10 0.17 -2.51 16 9 C 0.52 17.47 7.23 87.66 0.63 18.10 16 10 O -0.57 -23.52 12.86 -3.06 -0.04 -23.56 16 11 N -0.71 -21.45 4.71 -422.93 -1.99 -23.44 16 12 C 0.21 6.94 0.54 3.61 0.00 6.95 16 13 C -0.15 -4.08 7.04 71.98 0.51 -3.58 16 14 C 0.15 6.68 5.02 86.38 0.43 7.12 16 15 N -0.73 -37.23 5.17 -343.46 -1.78 -39.01 16 16 C -0.25 -14.23 9.99 84.03 0.84 -13.39 16 17 H 0.06 3.47 7.83 -2.91 -0.02 3.44 16 18 C -0.06 -3.70 5.50 84.86 0.47 -3.23 16 19 N -0.96 -57.23 13.06 21.65 0.28 -56.94 16 20 Si 0.97 46.85 29.55 68.60 2.03 48.87 16 21 H -0.28 -13.62 7.11 99.48 0.71 -12.92 16 22 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 23 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 24 C -0.16 -4.94 4.05 -10.79 -0.04 -4.98 16 25 C -0.17 -3.92 9.62 30.60 0.29 -3.63 16 26 C -0.16 -3.59 9.81 30.60 0.30 -3.29 16 27 C -0.15 -4.26 9.64 22.37 0.22 -4.05 16 28 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.07 0.76 7.66 -2.39 -0.02 0.74 16 30 H 0.06 0.77 7.66 -2.39 -0.02 0.76 16 31 H 0.15 2.65 6.30 -2.91 -0.02 2.63 16 32 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 33 H 0.11 3.64 8.06 -2.91 -0.02 3.61 16 34 H 0.13 2.51 8.08 -2.39 -0.02 2.50 16 35 H 0.11 2.87 8.08 -2.39 -0.02 2.85 16 36 H 0.41 10.19 8.48 -92.71 -0.79 9.40 16 37 H 0.08 2.11 6.84 -2.39 -0.02 2.09 16 38 H 0.05 1.76 6.86 -2.39 -0.02 1.74 16 39 H 0.09 1.85 7.01 -2.39 -0.02 1.83 16 40 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.01 0.30 6.64 -2.39 -0.02 0.28 16 42 H 0.38 19.59 6.35 -92.71 -0.59 19.00 16 43 H 0.25 14.59 8.31 -92.70 -0.77 13.82 16 44 H 0.08 3.04 7.18 -2.39 -0.02 3.02 16 45 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 46 H 0.11 2.33 5.87 -2.39 -0.01 2.31 16 47 H 0.11 2.11 7.42 -2.39 -0.02 2.09 16 48 H 0.09 2.03 8.14 -2.39 -0.02 2.02 16 49 H 0.13 3.38 8.06 -2.91 -0.02 3.36 16 Total: -1.00 -74.45 394.41 2.77 -71.68 By element: Atomic # 1 Polarization: 46.19 SS G_CDS: -0.40 Total: 45.79 kcal Atomic # 6 Polarization: -20.18 SS G_CDS: 5.64 Total: -14.54 kcal Atomic # 7 Polarization: -115.91 SS G_CDS: -3.49 Total: -119.39 kcal Atomic # 8 Polarization: -31.40 SS G_CDS: -1.01 Total: -32.41 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.87 kcal Total: -74.45 2.77 -71.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698651753.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.428 kcal (2) G-P(sol) polarization free energy of solvation -74.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds