Wall clock time and date at job start Tue Mar 31 2020 16:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47456 * 2 1 4 4 N 1.46502 * 109.46864 * 120.00168 * 2 1 3 5 5 C 1.46499 * 119.99632 * 299.99805 * 4 2 1 6 6 C 1.53004 * 109.47044 * 269.99880 * 5 4 2 7 7 N 1.46499 * 109.47044 * 179.97438 * 6 5 4 8 8 C 1.46503 * 120.00001 * 89.99973 * 7 6 5 9 9 C 1.36933 * 120.00319 * 270.00406 * 7 6 5 10 10 H 1.07999 * 120.00171 * 23.04645 * 9 7 6 11 11 C 1.38815 * 120.00233 * 203.04945 * 9 7 6 12 12 N 1.31619 * 119.99854 * 12.91772 * 11 9 7 13 13 Si 1.86802 * 120.00053 * 192.92201 * 11 9 7 14 14 H 1.48500 * 109.47130 * 59.99952 * 13 11 9 15 15 H 1.48500 * 109.47090 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47139 * 299.99370 * 13 11 9 17 17 C 1.34771 * 120.00398 * 119.99923 * 4 2 1 18 18 O 1.21279 * 120.00415 * 180.02562 * 17 4 2 19 19 C 1.50707 * 119.99861 * 359.72462 * 17 4 2 20 20 H 1.08992 * 110.66765 * 58.48977 * 19 17 4 21 21 C 1.54711 * 110.74646 * 295.27608 * 19 17 4 22 22 C 1.51654 * 101.92402 * 266.95791 * 21 19 17 23 23 C 1.37739 * 132.16664 * 164.59463 * 22 21 19 24 24 C 1.38348 * 119.97293 * 180.36094 * 23 22 21 25 25 C 1.38284 * 119.76927 * 0.02562 * 24 23 22 26 26 C 1.37927 * 120.35070 * 359.84998 * 25 24 23 27 27 C 1.38874 * 107.03874 * 344.61866 * 22 21 19 28 28 O 1.36136 * 111.23967 * 358.92807 * 27 22 21 29 29 H 1.08998 * 109.47291 * 300.00627 * 1 2 3 30 30 H 1.09000 * 109.46841 * 59.99999 * 1 2 3 31 31 H 1.08999 * 109.47239 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47065 * 239.99860 * 2 1 3 33 33 H 1.08996 * 109.47194 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.46584 * 299.99954 * 3 2 1 35 35 H 1.08997 * 109.46664 * 59.99624 * 3 2 1 36 36 H 1.08996 * 109.47422 * 30.00041 * 5 4 2 37 37 H 1.08999 * 109.47119 * 150.00231 * 5 4 2 38 38 H 1.08996 * 109.47142 * 300.00332 * 6 5 4 39 39 H 1.08999 * 109.46876 * 60.00202 * 6 5 4 40 40 H 1.09004 * 109.47056 * 95.11918 * 8 7 6 41 41 H 1.09000 * 109.47697 * 215.11994 * 8 7 6 42 42 H 1.09003 * 109.47050 * 335.12672 * 8 7 6 43 43 H 0.97002 * 119.99983 * 180.02562 * 12 11 9 44 44 H 1.08995 * 110.93798 * 25.11306 * 21 19 17 45 45 H 1.09001 * 110.94018 * 148.80130 * 21 19 17 46 46 H 1.07998 * 120.01704 * 0.33767 * 23 22 21 47 47 H 1.08002 * 120.11417 * 180.02562 * 24 23 22 48 48 H 1.08000 * 119.82463 * 179.83006 * 25 24 23 49 49 H 1.07998 * 119.88298 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 1.6643 -0.1901 2.5267 6 6 2.7190 0.8169 2.9900 7 7 2.3647 1.3180 4.3202 8 6 2.8525 0.6277 5.5168 9 6 1.5776 2.4315 4.4453 10 1 0.9229 2.7235 3.6375 11 6 1.6212 3.1850 5.6103 12 7 2.5857 2.9901 6.4844 13 14 0.3109 4.4757 5.9374 14 1 -1.0239 3.8263 5.9799 15 1 0.5811 5.1364 7.2395 16 1 0.3337 5.4900 4.8531 17 6 2.7931 -1.7865 1.0726 18 8 3.1969 -2.3585 2.0629 19 6 3.1521 -2.3050 -0.2961 20 1 3.6729 -1.5406 -0.8727 21 6 1.8897 -2.7921 -1.0462 22 6 1.8671 -4.2675 -0.6964 23 6 0.8848 -5.2274 -0.8000 24 6 1.1395 -6.5241 -0.3905 25 6 2.3815 -6.8507 0.1224 26 6 3.3674 -5.8916 0.2246 27 6 3.1207 -4.5849 -0.1899 28 8 3.9440 -3.5007 -0.1962 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 3.1301 1.4424 0.0005 34 1 1.6768 1.9562 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 0.6904 0.2974 2.4843 37 1 1.6237 -1.0226 3.2291 38 1 3.6929 0.3294 3.0324 39 1 2.7597 1.6494 2.2875 40 1 3.7661 1.1084 5.8666 41 1 2.0944 0.6758 6.2986 42 1 3.0600 -0.4149 5.2756 43 1 2.6159 3.5164 7.2987 44 1 0.9971 -2.2897 -0.6734 45 1 1.9956 -2.6482 -2.1214 46 1 -0.0841 -4.9679 -1.2004 47 1 0.3710 -7.2787 -0.4711 48 1 2.5805 -7.8620 0.4449 49 1 4.3349 -6.1550 0.6259 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700972997.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:42 Heat of formation + Delta-G solvation = -3.768978 kcal Electronic energy + Delta-G solvation = -29668.651125 eV Core-core repulsion = 25790.604440 eV Total energy + Delta-G solvation = -3878.046685 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.72965 -39.55616 -37.56265 -36.64181 -35.44294 -33.03922 -32.05974 -31.10932 -30.21841 -30.00791 -27.95477 -27.34263 -25.79055 -24.76469 -23.29394 -22.58535 -21.91335 -21.69341 -20.51923 -19.10607 -17.95554 -17.17986 -16.92540 -16.56060 -16.02095 -15.73325 -15.23348 -14.84803 -14.59416 -14.34951 -14.09622 -13.68980 -13.65960 -13.47945 -13.39590 -13.13717 -13.09262 -12.88868 -12.56710 -12.25060 -12.17853 -12.01828 -11.94578 -11.80322 -11.61320 -11.51125 -11.14714 -11.05400 -10.88690 -10.82450 -10.76068 -10.50370 -10.14019 -9.89840 -9.70364 -9.61114 -9.07532 -8.71708 -8.40669 -8.27602 -6.69604 -5.69354 -3.17437 1.09628 1.20553 2.59004 2.82716 3.22199 3.38049 3.43755 3.44597 3.56646 4.12000 4.17645 4.32032 4.51259 4.64332 4.65816 4.85737 4.92025 4.99579 5.01814 5.08452 5.18299 5.25945 5.37573 5.42157 5.44720 5.54723 5.58837 5.70262 5.75649 5.78422 5.81996 5.84624 6.05959 6.12520 6.19921 6.21215 6.26200 6.28809 6.36940 6.39433 6.57640 6.72641 6.91218 6.97888 7.01162 7.44379 7.54613 7.76810 7.83430 8.27259 8.42558 9.25685 9.89597 10.40134 11.34903 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.018609 B = 0.002952 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.247382 B = 9481.710270 C =10036.511820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.124 3.876 3 C -0.170 4.170 4 N -0.596 5.596 5 C 0.093 3.907 6 C 0.138 3.862 7 N -0.599 5.599 8 C 0.162 3.838 9 C -0.258 4.258 10 H 0.066 0.934 11 C 0.003 3.997 12 N -0.905 5.905 13 Si 0.904 3.096 14 H -0.285 1.285 15 H -0.290 1.290 16 H -0.283 1.283 17 C 0.494 3.506 18 O -0.516 6.516 19 C 0.064 3.936 20 H 0.140 0.860 21 C -0.105 4.105 22 C -0.176 4.176 23 C -0.069 4.069 24 C -0.151 4.151 25 C -0.085 4.085 26 C -0.133 4.133 27 C 0.115 3.885 28 O -0.274 6.274 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.085 0.915 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.036 0.964 39 H 0.054 0.946 40 H 0.031 0.969 41 H 0.040 0.960 42 H 0.000 1.000 43 H 0.253 0.747 44 H 0.102 0.898 45 H 0.102 0.898 46 H 0.124 0.876 47 H 0.127 0.873 48 H 0.131 0.869 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.541 -14.130 -20.184 24.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.020 3.980 3 C -0.228 4.228 4 N -0.331 5.331 5 C -0.031 4.031 6 C 0.010 3.990 7 N -0.322 5.322 8 C 0.017 3.983 9 C -0.388 4.388 10 H 0.084 0.916 11 C -0.196 4.196 12 N -0.550 5.550 13 Si 0.734 3.266 14 H -0.211 1.211 15 H -0.216 1.216 16 H -0.210 1.210 17 C 0.279 3.721 18 O -0.391 6.391 19 C 0.004 3.996 20 H 0.157 0.843 21 C -0.142 4.142 22 C -0.177 4.177 23 C -0.087 4.087 24 C -0.169 4.169 25 C -0.103 4.103 26 C -0.152 4.152 27 C 0.070 3.930 28 O -0.186 6.186 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.103 0.897 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.054 0.946 39 H 0.072 0.928 40 H 0.049 0.951 41 H 0.058 0.942 42 H 0.019 0.981 43 H 0.063 0.937 44 H 0.120 0.880 45 H 0.120 0.880 46 H 0.142 0.858 47 H 0.145 0.855 48 H 0.148 0.852 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.019 -14.323 -19.417 24.316 hybrid contribution -0.821 0.938 0.291 1.280 sum -3.840 -13.385 -19.126 23.658 Atomic orbital electron populations 1.22224 0.94678 1.02265 1.03309 1.21298 0.94895 0.94282 0.87509 1.22339 1.01845 0.95215 1.03380 1.48174 1.49901 1.27040 1.07981 1.22526 1.00728 0.99004 0.80862 1.21178 0.94533 0.94877 0.88433 1.43831 1.59301 1.29654 0.99399 1.20805 0.98903 0.90294 0.88294 1.19099 1.15623 1.02096 1.01934 0.91589 1.25034 0.97702 0.98181 0.98646 1.70074 1.31121 1.42389 1.11391 0.86356 0.81572 0.81415 0.77283 1.21108 1.21636 1.20961 1.20692 0.79403 0.81036 0.90924 1.90754 1.52129 1.57333 1.38868 1.23357 0.92809 0.88487 0.94984 0.84310 1.21964 0.98269 0.92378 1.01591 1.20714 0.95703 0.96072 1.05181 1.20267 0.97860 0.92054 0.98538 1.21016 0.97458 0.96155 1.02321 1.20879 0.92709 0.98825 0.97921 1.20301 1.01304 0.90119 1.03467 1.19588 0.89338 0.89299 0.94819 1.86935 1.30719 1.12314 1.88681 0.91098 0.91271 0.92416 0.89690 0.92038 0.91653 0.90342 0.90502 0.90733 0.94589 0.92817 0.95109 0.94170 0.98094 0.93688 0.87989 0.87987 0.85804 0.85508 0.85160 0.85329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.57 8.92 37.16 0.33 -1.24 16 2 C 0.12 1.29 2.28 -67.93 -0.16 1.14 16 3 C -0.17 -1.85 8.14 37.16 0.30 -1.55 16 4 N -0.60 -8.68 2.38 -166.10 -0.40 -9.08 16 5 C 0.09 1.70 5.15 -4.04 -0.02 1.68 16 6 C 0.14 2.95 5.69 -4.04 -0.02 2.93 16 7 N -0.60 -15.48 2.92 -181.11 -0.53 -16.01 16 8 C 0.16 4.25 8.98 59.85 0.54 4.79 16 9 C -0.26 -7.05 9.65 -15.06 -0.15 -7.20 16 10 H 0.07 1.71 7.86 -52.49 -0.41 1.30 16 11 C 0.00 0.08 5.10 -17.43 -0.09 -0.01 16 12 N -0.91 -26.86 10.71 55.49 0.59 -26.27 16 13 Si 0.90 21.76 29.57 -169.99 -5.03 16.73 16 14 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 15 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 C 0.49 7.93 6.99 -10.98 -0.08 7.86 16 18 O -0.52 -10.83 16.11 -13.50 -0.22 -11.05 16 19 C 0.06 0.78 3.12 -26.98 -0.08 0.69 16 20 H 0.14 1.26 7.73 -51.93 -0.40 0.86 16 21 C -0.10 -1.00 5.34 -26.51 -0.14 -1.14 16 22 C -0.18 -2.06 6.26 -104.10 -0.65 -2.71 16 23 C -0.07 -0.69 10.03 -39.72 -0.40 -1.09 16 24 C -0.15 -1.41 10.07 -39.52 -0.40 -1.81 16 25 C -0.09 -0.84 10.02 -39.68 -0.40 -1.24 16 26 C -0.13 -1.62 10.06 -39.30 -0.40 -2.01 16 27 C 0.11 1.58 6.90 -38.95 -0.27 1.31 16 28 O -0.27 -4.04 10.41 -39.24 -0.41 -4.45 16 29 H 0.07 0.80 6.66 -51.93 -0.35 0.45 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.52 6.90 -51.93 -0.36 0.16 16 32 H 0.09 0.66 4.77 -51.93 -0.25 0.42 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 1.07 6.17 -51.93 -0.32 0.75 16 36 H 0.08 1.37 6.43 -51.93 -0.33 1.04 16 37 H 0.07 1.56 7.42 -51.93 -0.39 1.18 16 38 H 0.04 0.81 8.07 -51.93 -0.42 0.39 16 39 H 0.05 1.09 5.34 -51.93 -0.28 0.82 16 40 H 0.03 0.87 7.34 -51.93 -0.38 0.49 16 41 H 0.04 1.11 7.34 -51.93 -0.38 0.72 16 42 H 0.00 0.01 8.03 -51.93 -0.42 -0.41 16 43 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 44 H 0.10 0.91 5.02 -51.93 -0.26 0.65 16 45 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 47 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 48 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 49 H 0.13 1.42 8.06 -52.49 -0.42 0.99 16 LS Contribution 384.33 15.07 5.79 5.79 Total: -1.00 -34.58 384.33 -9.73 -44.30 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -7.46 Total: -0.38 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -2.07 Total: 0.41 kcal Atomic # 7 Polarization: -51.03 SS G_CDS: -0.33 Total: -51.36 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -0.63 Total: -15.50 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.58 -9.73 -44.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700972997.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.534 kcal (2) G-P(sol) polarization free energy of solvation -34.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds