Wall clock time and date at job start Tue Mar 31 2020 16:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47456 * 2 1 4 4 N 1.46502 * 109.46864 * 120.00168 * 2 1 3 5 5 C 1.46499 * 119.99632 * 299.99805 * 4 2 1 6 6 C 1.53004 * 109.47044 * 269.99880 * 5 4 2 7 7 N 1.46499 * 109.47044 * 179.97438 * 6 5 4 8 8 C 1.46503 * 120.00001 * 89.99973 * 7 6 5 9 9 C 1.36933 * 120.00319 * 270.00406 * 7 6 5 10 10 H 1.07999 * 120.00171 * 23.04645 * 9 7 6 11 11 C 1.38815 * 120.00233 * 203.04945 * 9 7 6 12 12 N 1.31619 * 119.99854 * 12.91772 * 11 9 7 13 13 Si 1.86802 * 120.00053 * 192.92201 * 11 9 7 14 14 H 1.48500 * 109.47130 * 59.99952 * 13 11 9 15 15 H 1.48500 * 109.47090 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47139 * 299.99370 * 13 11 9 17 17 C 1.34771 * 120.00398 * 119.99923 * 4 2 1 18 18 O 1.21279 * 120.00415 * 180.02562 * 17 4 2 19 19 C 1.50707 * 119.99861 * 359.72462 * 17 4 2 20 20 H 1.08992 * 110.66765 * 58.48977 * 19 17 4 21 21 C 1.54711 * 110.74646 * 295.27608 * 19 17 4 22 22 C 1.51654 * 101.92402 * 266.95791 * 21 19 17 23 23 C 1.37739 * 132.16664 * 164.59463 * 22 21 19 24 24 C 1.38348 * 119.97293 * 180.36094 * 23 22 21 25 25 C 1.38284 * 119.76927 * 0.02562 * 24 23 22 26 26 C 1.37927 * 120.35070 * 359.84998 * 25 24 23 27 27 C 1.38874 * 107.03874 * 344.61866 * 22 21 19 28 28 O 1.36136 * 111.23967 * 358.92807 * 27 22 21 29 29 H 1.08998 * 109.47291 * 300.00627 * 1 2 3 30 30 H 1.09000 * 109.46841 * 59.99999 * 1 2 3 31 31 H 1.08999 * 109.47239 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47065 * 239.99860 * 2 1 3 33 33 H 1.08996 * 109.47194 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.46584 * 299.99954 * 3 2 1 35 35 H 1.08997 * 109.46664 * 59.99624 * 3 2 1 36 36 H 1.08996 * 109.47422 * 30.00041 * 5 4 2 37 37 H 1.08999 * 109.47119 * 150.00231 * 5 4 2 38 38 H 1.08996 * 109.47142 * 300.00332 * 6 5 4 39 39 H 1.08999 * 109.46876 * 60.00202 * 6 5 4 40 40 H 1.09004 * 109.47056 * 95.11918 * 8 7 6 41 41 H 1.09000 * 109.47697 * 215.11994 * 8 7 6 42 42 H 1.09003 * 109.47050 * 335.12672 * 8 7 6 43 43 H 0.97002 * 119.99983 * 180.02562 * 12 11 9 44 44 H 1.08995 * 110.93798 * 25.11306 * 21 19 17 45 45 H 1.09001 * 110.94018 * 148.80130 * 21 19 17 46 46 H 1.07998 * 120.01704 * 0.33767 * 23 22 21 47 47 H 1.08002 * 120.11417 * 180.02562 * 24 23 22 48 48 H 1.08000 * 119.82463 * 179.83006 * 25 24 23 49 49 H 1.07998 * 119.88298 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 1.6643 -0.1901 2.5267 6 6 2.7190 0.8169 2.9900 7 7 2.3647 1.3180 4.3202 8 6 2.8525 0.6277 5.5168 9 6 1.5776 2.4315 4.4453 10 1 0.9229 2.7235 3.6375 11 6 1.6212 3.1850 5.6103 12 7 2.5857 2.9901 6.4844 13 14 0.3109 4.4757 5.9374 14 1 -1.0239 3.8263 5.9799 15 1 0.5811 5.1364 7.2395 16 1 0.3337 5.4900 4.8531 17 6 2.7931 -1.7865 1.0726 18 8 3.1969 -2.3585 2.0629 19 6 3.1521 -2.3050 -0.2961 20 1 3.6729 -1.5406 -0.8727 21 6 1.8897 -2.7921 -1.0462 22 6 1.8671 -4.2675 -0.6964 23 6 0.8848 -5.2274 -0.8000 24 6 1.1395 -6.5241 -0.3905 25 6 2.3815 -6.8507 0.1224 26 6 3.3674 -5.8916 0.2246 27 6 3.1207 -4.5849 -0.1899 28 8 3.9440 -3.5007 -0.1962 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 3.1301 1.4424 0.0005 34 1 1.6768 1.9562 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 0.6904 0.2974 2.4843 37 1 1.6237 -1.0226 3.2291 38 1 3.6929 0.3294 3.0324 39 1 2.7597 1.6494 2.2875 40 1 3.7661 1.1084 5.8666 41 1 2.0944 0.6758 6.2986 42 1 3.0600 -0.4149 5.2756 43 1 2.6159 3.5164 7.2987 44 1 0.9971 -2.2897 -0.6734 45 1 1.9956 -2.6482 -2.1214 46 1 -0.0841 -4.9679 -1.2004 47 1 0.3710 -7.2787 -0.4711 48 1 2.5805 -7.8620 0.4449 49 1 4.3349 -6.1550 0.6259 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700972997.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:42 Heat of formation + Delta-G solvation = -23.743095 kcal Electronic energy + Delta-G solvation = -29669.517268 eV Core-core repulsion = 25790.604440 eV Total energy + Delta-G solvation = -3878.912828 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.67339 -40.69495 -38.50197 -37.91872 -37.25910 -34.09006 -33.53393 -32.54824 -31.16103 -31.01633 -29.42716 -28.16781 -27.93052 -25.98306 -24.74255 -23.47166 -22.82080 -22.62962 -22.33803 -20.22134 -19.07820 -18.64477 -18.07929 -17.79868 -17.23653 -16.79551 -16.63558 -16.17668 -15.93113 -15.52554 -15.18877 -15.11961 -14.85291 -14.67589 -14.46875 -14.33184 -14.14752 -14.03570 -13.88617 -13.64818 -13.29099 -13.16737 -12.87841 -12.83122 -12.75360 -12.73471 -12.60738 -12.51317 -12.48044 -12.17105 -12.11498 -11.97633 -11.84795 -11.72103 -11.43858 -10.85759 -10.68016 -9.89234 -9.84360 -9.14531 -8.78965 -7.83217 -5.35292 0.31156 0.38580 1.41103 1.46723 1.50510 1.56685 1.74237 2.24662 2.51657 2.77204 3.22706 3.30278 3.32450 3.45225 3.68833 3.87111 3.89895 4.10246 4.11790 4.15058 4.20858 4.27885 4.30996 4.49940 4.50775 4.59216 4.60402 4.63838 4.66044 4.72091 4.80825 4.83277 4.88296 5.00431 5.03657 5.07320 5.09299 5.22658 5.35636 5.41420 5.42764 5.46900 5.51853 5.53659 5.57320 5.62942 5.64616 6.15481 6.29276 6.37342 7.05114 7.10767 7.80524 8.29424 9.20792 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.018609 B = 0.002952 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.247382 B = 9481.710270 C =10036.511820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.118 3.882 3 C -0.169 4.169 4 N -0.590 5.590 5 C 0.114 3.886 6 C 0.144 3.856 7 N -0.616 5.616 8 C 0.180 3.820 9 C -0.264 4.264 10 H 0.081 0.919 11 C -0.056 4.056 12 N -0.943 5.943 13 Si 0.975 3.025 14 H -0.276 1.276 15 H -0.298 1.298 16 H -0.269 1.269 17 C 0.487 3.513 18 O -0.579 6.579 19 C 0.064 3.936 20 H 0.174 0.826 21 C -0.094 4.094 22 C -0.186 4.186 23 C -0.075 4.075 24 C -0.149 4.149 25 C -0.090 4.090 26 C -0.159 4.159 27 C 0.073 3.927 28 O -0.301 6.301 29 H 0.047 0.953 30 H 0.101 0.899 31 H 0.063 0.937 32 H 0.123 0.877 33 H 0.054 0.946 34 H 0.099 0.901 35 H 0.046 0.954 36 H 0.085 0.915 37 H 0.042 0.958 38 H 0.016 0.984 39 H 0.067 0.933 40 H 0.005 0.995 41 H 0.020 0.980 42 H 0.012 0.988 43 H 0.248 0.752 44 H 0.112 0.888 45 H 0.142 0.858 46 H 0.153 0.847 47 H 0.158 0.842 48 H 0.155 0.845 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.195 -14.069 -23.850 28.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.017 3.983 3 C -0.226 4.226 4 N -0.323 5.323 5 C -0.011 4.011 6 C 0.017 3.983 7 N -0.339 5.339 8 C 0.035 3.965 9 C -0.394 4.394 10 H 0.099 0.901 11 C -0.251 4.251 12 N -0.590 5.590 13 Si 0.802 3.198 14 H -0.202 1.202 15 H -0.224 1.224 16 H -0.194 1.194 17 C 0.275 3.725 18 O -0.458 6.458 19 C 0.004 3.996 20 H 0.191 0.809 21 C -0.131 4.131 22 C -0.187 4.187 23 C -0.093 4.093 24 C -0.167 4.167 25 C -0.108 4.108 26 C -0.178 4.178 27 C 0.028 3.972 28 O -0.214 6.214 29 H 0.066 0.934 30 H 0.120 0.880 31 H 0.082 0.918 32 H 0.140 0.860 33 H 0.073 0.927 34 H 0.118 0.882 35 H 0.066 0.934 36 H 0.103 0.897 37 H 0.060 0.940 38 H 0.034 0.966 39 H 0.085 0.915 40 H 0.023 0.977 41 H 0.039 0.961 42 H 0.030 0.970 43 H 0.057 0.943 44 H 0.130 0.870 45 H 0.160 0.840 46 H 0.171 0.829 47 H 0.175 0.825 48 H 0.173 0.827 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.699 -14.262 -23.168 27.796 hybrid contribution 0.032 0.828 1.378 1.607 sum -5.667 -13.434 -21.790 26.218 Atomic orbital electron populations 1.22223 0.93345 1.02854 1.03745 1.21714 0.95951 0.93995 0.86664 1.22325 1.01443 0.95397 1.03485 1.48218 1.49409 1.26878 1.07813 1.21879 0.99748 0.96826 0.82658 1.21254 0.94479 0.95699 0.86831 1.44065 1.59475 1.29777 1.00618 1.20479 0.97016 0.90660 0.88376 1.19533 1.15570 1.01967 1.02284 0.90143 1.25926 0.99855 1.00714 0.98620 1.70264 1.33144 1.43784 1.11771 0.85230 0.78836 0.78835 0.76873 1.20225 1.22441 1.19442 1.21617 0.78234 0.80529 0.92151 1.90721 1.54483 1.59272 1.41329 1.23605 0.94717 0.88666 0.92583 0.80935 1.22068 0.96829 0.90763 1.03400 1.21081 0.95119 0.97586 1.04932 1.20699 0.98629 0.91944 0.98018 1.21478 0.97682 0.96837 1.00698 1.21234 0.92570 0.99486 0.97481 1.20596 1.02100 0.90720 1.04356 1.19994 0.90640 0.89583 0.96989 1.86892 1.32143 1.13311 1.89085 0.93434 0.88032 0.91781 0.85955 0.92725 0.88242 0.93445 0.89694 0.93960 0.96588 0.91519 0.97703 0.96141 0.96978 0.94280 0.87038 0.84010 0.82904 0.82455 0.82721 0.85854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 8.92 71.98 0.64 -1.84 16 2 C 0.12 2.09 2.28 44.99 0.10 2.20 16 3 C -0.17 -3.21 8.14 71.98 0.59 -2.62 16 4 N -0.59 -16.72 2.38 -797.82 -1.90 -18.62 16 5 C 0.11 4.26 5.15 86.38 0.44 4.70 16 6 C 0.14 6.34 5.69 86.38 0.49 6.83 16 7 N -0.62 -32.77 2.92 -726.92 -2.12 -34.89 16 8 C 0.18 9.95 8.98 127.77 1.15 11.10 16 9 C -0.26 -14.53 9.65 84.03 0.81 -13.72 16 10 H 0.08 4.11 7.86 -2.91 -0.02 4.09 16 11 C -0.06 -3.20 5.10 84.86 0.43 -2.77 16 12 N -0.94 -57.66 10.71 21.65 0.23 -57.42 16 13 Si 0.97 44.88 29.57 68.60 2.03 46.91 16 14 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 15 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 16 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 17 C 0.49 15.64 6.99 87.66 0.61 16.25 16 18 O -0.58 -25.58 16.11 15.20 0.24 -25.33 16 19 C 0.06 1.44 3.12 30.43 0.09 1.54 16 20 H 0.17 2.59 7.73 -2.39 -0.02 2.57 16 21 C -0.09 -1.46 5.34 30.74 0.16 -1.29 16 22 C -0.19 -3.98 6.26 -19.53 -0.12 -4.11 16 23 C -0.08 -1.28 10.03 22.18 0.22 -1.06 16 24 C -0.15 -2.38 10.07 22.31 0.22 -2.16 16 25 C -0.09 -1.67 10.02 22.21 0.22 -1.45 16 26 C -0.16 -3.97 10.06 22.45 0.23 -3.75 16 27 C 0.07 1.99 6.90 22.68 0.16 2.15 16 28 O -0.30 -8.97 10.41 -76.87 -0.80 -9.77 16 29 H 0.05 0.96 6.66 -2.39 -0.02 0.94 16 30 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.06 0.91 6.90 -2.39 -0.02 0.89 16 32 H 0.12 1.31 4.77 -2.39 -0.01 1.30 16 33 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.05 1.21 6.17 -2.39 -0.01 1.20 16 36 H 0.08 3.03 6.43 -2.39 -0.02 3.02 16 37 H 0.04 1.85 7.42 -2.39 -0.02 1.84 16 38 H 0.02 0.75 8.07 -2.39 -0.02 0.73 16 39 H 0.07 2.74 5.34 -2.39 -0.01 2.73 16 40 H 0.00 0.28 7.34 -2.39 -0.02 0.26 16 41 H 0.02 1.17 7.34 -2.39 -0.02 1.15 16 42 H 0.01 0.61 8.03 -2.39 -0.02 0.59 16 43 H 0.25 14.73 8.31 -92.71 -0.77 13.95 16 44 H 0.11 1.52 5.02 -2.39 -0.01 1.50 16 45 H 0.14 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 47 H 0.16 1.49 8.06 -2.91 -0.02 1.46 16 48 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 49 H 0.12 2.97 8.06 -2.91 -0.02 2.95 16 Total: -1.00 -80.99 384.33 5.09 -75.90 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 0.95 Total: 13.21 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: 6.46 Total: 10.02 kcal Atomic # 7 Polarization: -107.15 SS G_CDS: -3.79 Total: -110.94 kcal Atomic # 8 Polarization: -34.54 SS G_CDS: -0.56 Total: -35.10 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -80.99 5.09 -75.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700972997.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.160 kcal (2) G-P(sol) polarization free energy of solvation -80.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds