Wall clock time and date at job start Tue Mar 31 2020 16:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47091 * 2 1 4 4 N 1.46498 * 109.47069 * 239.99891 * 2 1 3 5 5 C 1.46502 * 120.00268 * 243.90573 * 4 2 1 6 6 C 1.53002 * 109.46899 * 84.25018 * 5 4 2 7 7 N 1.46495 * 109.46875 * 183.20187 * 6 5 4 8 8 C 1.46499 * 120.00130 * 90.00304 * 7 6 5 9 9 C 1.36939 * 120.00029 * 269.99533 * 7 6 5 10 10 H 1.07998 * 119.99565 * 24.28695 * 9 7 6 11 11 C 1.38809 * 120.00024 * 204.27954 * 9 7 6 12 12 N 1.31622 * 120.00341 * 9.80517 * 11 9 7 13 13 Si 1.86802 * 119.99677 * 189.80511 * 11 9 7 14 14 H 1.48493 * 109.47238 * 90.00282 * 13 11 9 15 15 H 1.48505 * 109.46626 * 210.00055 * 13 11 9 16 16 H 1.48499 * 109.47148 * 329.99763 * 13 11 9 17 17 C 1.34775 * 119.99606 * 63.90926 * 4 2 1 18 18 O 1.21285 * 120.00440 * 354.96146 * 17 4 2 19 19 C 1.50703 * 120.00110 * 174.96452 * 17 4 2 20 20 H 1.09002 * 110.66376 * 321.90388 * 19 17 4 21 21 C 1.54703 * 110.74987 * 85.31781 * 19 17 4 22 22 C 1.51647 * 101.92712 * 93.04936 * 21 19 17 23 23 C 1.37739 * 132.17498 * 195.85129 * 22 21 19 24 24 C 1.38343 * 119.98091 * 179.02821 * 23 22 21 25 25 C 1.38287 * 119.76717 * 359.97438 * 24 23 22 26 26 C 1.37937 * 120.34961 * 0.22161 * 25 24 23 27 27 C 1.38882 * 107.04109 * 15.35678 * 22 21 19 28 28 O 1.36143 * 111.23247 * 1.11239 * 27 22 21 29 29 H 1.08998 * 109.47177 * 181.59668 * 1 2 3 30 30 H 1.09004 * 109.46754 * 301.58966 * 1 2 3 31 31 H 1.08994 * 109.47122 * 61.59170 * 1 2 3 32 32 H 1.09005 * 109.46899 * 119.99864 * 2 1 3 33 33 H 1.09000 * 109.46816 * 306.79128 * 3 2 1 34 34 H 1.09007 * 109.46649 * 66.78776 * 3 2 1 35 35 H 1.08998 * 109.46705 * 186.78623 * 3 2 1 36 36 H 1.08995 * 109.46719 * 204.24871 * 5 4 2 37 37 H 1.08997 * 109.47150 * 324.25402 * 5 4 2 38 38 H 1.09002 * 109.47184 * 303.20302 * 6 5 4 39 39 H 1.08998 * 109.47060 * 63.20151 * 6 5 4 40 40 H 1.09002 * 109.47031 * 93.75396 * 8 7 6 41 41 H 1.08997 * 109.47464 * 213.76026 * 8 7 6 42 42 H 1.09004 * 109.46607 * 333.75865 * 8 7 6 43 43 H 0.96998 * 120.00155 * 179.97438 * 12 11 9 44 44 H 1.09007 * 110.93778 * 211.20230 * 21 19 17 45 45 H 1.08994 * 110.93951 * 334.89032 * 21 19 17 46 46 H 1.08001 * 120.00819 * 359.00897 * 23 22 21 47 47 H 1.08004 * 120.11816 * 180.02562 * 24 23 22 48 48 H 1.07997 * 119.82631 * 180.19798 * 25 24 23 49 49 H 1.08000 * 119.87950 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.7886 -1.9297 -1.0635 6 6 1.8298 -3.1145 -0.9299 7 7 2.5987 -4.3437 -0.7207 8 6 2.9329 -4.7763 0.6385 9 6 3.0049 -5.0885 -1.7956 10 1 3.1215 -4.6220 -2.7626 11 6 3.2670 -6.4430 -1.6423 12 7 2.9437 -7.0532 -0.5217 13 14 4.0784 -7.3998 -3.0263 14 1 5.5536 -7.3497 -2.8641 15 1 3.6234 -8.8129 -2.9841 16 1 3.7030 -6.7977 -4.3308 17 6 1.7589 -0.1860 -2.4186 18 8 1.0452 0.7878 -2.5339 19 6 2.3557 -0.8317 -3.6426 20 1 3.3733 -1.1676 -3.4428 21 6 1.4726 -2.0051 -4.1289 22 6 0.5816 -1.3245 -5.1501 23 6 -0.5985 -1.7069 -5.7486 24 6 -1.2211 -0.8631 -6.6509 25 6 -0.6547 0.3630 -6.9478 26 6 0.5291 0.7463 -6.3526 27 6 1.1649 -0.0996 -5.4470 28 8 2.3278 0.0721 -4.7603 29 1 -0.3633 -1.0272 0.0286 30 1 -0.3633 0.5384 0.8754 31 1 -0.3633 0.4889 -0.9039 32 1 1.8933 -0.5138 0.8900 33 1 1.5808 1.9902 -0.8230 34 1 1.7792 1.9201 0.9446 35 1 3.1232 1.4449 -0.1214 36 1 3.4132 -2.0655 -1.9464 37 1 3.4202 -1.8717 -0.1770 38 1 1.1669 -2.9514 -0.0801 39 1 1.2374 -3.2069 -1.8402 40 1 2.1757 -5.4754 0.9937 41 1 3.9066 -5.2662 0.6348 42 1 2.9648 -3.9092 1.2982 43 1 3.1265 -7.9998 -0.4147 44 1 2.0788 -2.7811 -4.5966 45 1 0.8829 -2.4148 -3.3089 46 1 -1.0374 -2.6654 -5.5138 47 1 -2.1468 -1.1605 -7.1213 48 1 -1.1416 1.0239 -7.6496 49 1 0.9650 1.7054 -6.5902 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700972998.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:46 Heat of formation + Delta-G solvation = -5.692989 kcal Electronic energy + Delta-G solvation = -30160.495146 eV Core-core repulsion = 26282.365030 eV Total energy + Delta-G solvation = -3878.130117 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.51974 -39.58536 -37.35230 -36.40310 -35.23510 -33.34710 -32.27039 -31.19975 -30.01214 -29.26319 -27.94036 -27.04992 -25.94434 -24.65025 -23.58055 -22.51589 -21.85036 -21.51884 -20.66610 -19.04136 -17.37695 -16.98983 -16.91170 -16.68389 -15.75707 -15.58513 -15.16239 -15.01371 -14.65520 -14.10111 -13.87173 -13.71938 -13.53173 -13.38836 -13.22924 -13.16263 -12.91888 -12.70523 -12.58657 -12.54484 -12.00678 -11.83565 -11.74423 -11.62845 -11.51403 -11.44838 -11.07531 -11.02589 -10.96098 -10.85711 -10.75574 -10.57447 -10.33144 -9.99678 -9.93267 -9.39453 -8.84515 -8.78013 -8.47410 -8.04396 -6.83496 -5.82427 -3.32466 1.32551 1.41621 2.56951 2.92964 3.31381 3.37946 3.39376 3.43490 3.79199 4.33636 4.44236 4.47244 4.59206 4.89443 5.03782 5.05225 5.12049 5.18679 5.25839 5.27944 5.34189 5.38568 5.41825 5.56148 5.61100 5.69478 5.71393 5.78308 5.83660 5.87601 5.93413 6.01238 6.03065 6.07772 6.28766 6.32660 6.33638 6.43520 6.45300 6.49835 6.57041 6.63153 6.71733 6.85618 7.19767 7.28538 7.52425 7.63926 7.70567 8.26770 8.30411 9.12831 9.74823 10.23871 11.22196 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.009691 B = 0.004605 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2888.662402 B = 6078.415076 C = 8144.186107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.146 3.854 3 C -0.167 4.167 4 N -0.598 5.598 5 C 0.077 3.923 6 C 0.136 3.864 7 N -0.598 5.598 8 C 0.163 3.837 9 C -0.261 4.261 10 H 0.068 0.932 11 C 0.007 3.993 12 N -0.905 5.905 13 Si 0.903 3.097 14 H -0.287 1.287 15 H -0.290 1.290 16 H -0.278 1.278 17 C 0.505 3.495 18 O -0.527 6.527 19 C 0.063 3.937 20 H 0.139 0.861 21 C -0.098 4.098 22 C -0.165 4.165 23 C -0.069 4.069 24 C -0.152 4.152 25 C -0.090 4.090 26 C -0.136 4.136 27 C 0.117 3.883 28 O -0.280 6.280 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.052 0.948 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.040 0.960 39 H 0.051 0.949 40 H 0.030 0.970 41 H 0.045 0.955 42 H -0.004 1.004 43 H 0.254 0.746 44 H 0.107 0.893 45 H 0.104 0.896 46 H 0.125 0.875 47 H 0.125 0.875 48 H 0.128 0.872 49 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.398 13.652 -4.824 15.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.043 3.957 3 C -0.225 4.225 4 N -0.333 5.333 5 C -0.048 4.048 6 C 0.007 3.993 7 N -0.321 5.321 8 C 0.018 3.982 9 C -0.391 4.391 10 H 0.086 0.914 11 C -0.191 4.191 12 N -0.550 5.550 13 Si 0.732 3.268 14 H -0.214 1.214 15 H -0.217 1.217 16 H -0.204 1.204 17 C 0.292 3.708 18 O -0.403 6.403 19 C 0.003 3.997 20 H 0.157 0.843 21 C -0.135 4.135 22 C -0.166 4.166 23 C -0.087 4.087 24 C -0.170 4.170 25 C -0.108 4.108 26 C -0.155 4.155 27 C 0.071 3.929 28 O -0.193 6.193 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.105 0.895 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.058 0.942 39 H 0.069 0.931 40 H 0.048 0.952 41 H 0.064 0.936 42 H 0.014 0.986 43 H 0.064 0.936 44 H 0.126 0.874 45 H 0.122 0.878 46 H 0.143 0.857 47 H 0.143 0.857 48 H 0.146 0.854 49 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.555 14.114 -4.843 15.602 hybrid contribution 0.588 -0.922 -0.439 1.178 sum -3.967 13.193 -5.282 14.754 Atomic orbital electron populations 1.22201 0.94995 1.02298 1.03069 1.20998 0.94657 0.93038 0.87031 1.22192 1.01105 0.96321 1.02874 1.48176 1.54497 1.25580 1.05032 1.22852 0.95652 0.83316 1.03005 1.21172 0.92281 0.86227 0.99612 1.43835 1.61753 1.23021 1.03533 1.20821 1.00277 0.93886 0.83209 1.19131 1.40208 0.89798 0.89917 0.91407 1.25064 1.00502 0.96404 0.97176 1.70049 1.49736 1.09775 1.25399 0.86293 0.79293 0.79493 0.81678 1.21387 1.21658 1.20363 1.20678 0.81273 0.84330 0.84556 1.90632 1.36785 1.26876 1.86020 1.23432 1.02743 0.88307 0.85210 0.84341 1.21866 0.96676 0.96740 0.98265 1.20782 0.97977 0.95571 1.02292 1.20326 0.93195 0.99715 0.95452 1.20987 1.00942 0.95016 1.00028 1.20813 0.94507 0.96531 0.98943 1.20200 0.96042 0.99232 0.99989 1.19524 0.86167 0.93385 0.93782 1.86895 1.34012 1.60802 1.37584 0.92464 0.92175 0.90690 0.89526 0.90513 0.92073 0.92842 0.90380 0.90681 0.94212 0.93065 0.95202 0.93608 0.98591 0.93615 0.87447 0.87762 0.85655 0.85668 0.85446 0.85725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 9.19 37.16 0.34 -1.85 16 2 C 0.15 1.90 3.28 -67.93 -0.22 1.68 16 3 C -0.17 -2.06 8.94 37.16 0.33 -1.73 16 4 N -0.60 -8.64 2.42 -166.10 -0.40 -9.04 16 5 C 0.08 1.17 5.59 -4.04 -0.02 1.15 16 6 C 0.14 2.47 5.97 -4.04 -0.02 2.45 16 7 N -0.60 -13.60 2.92 -181.12 -0.53 -14.13 16 8 C 0.16 3.71 8.96 59.85 0.54 4.25 16 9 C -0.26 -6.51 9.65 -15.06 -0.15 -6.66 16 10 H 0.07 1.61 7.85 -52.49 -0.41 1.20 16 11 C 0.01 0.20 5.15 -17.43 -0.09 0.11 16 12 N -0.91 -25.09 10.62 55.49 0.59 -24.50 16 13 Si 0.90 20.69 29.56 -169.99 -5.03 15.66 16 14 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 16 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 17 C 0.51 8.02 6.28 -10.98 -0.07 7.95 16 18 O -0.53 -9.58 12.62 -12.66 -0.16 -9.73 16 19 C 0.06 0.93 3.17 -26.98 -0.09 0.85 16 20 H 0.14 1.83 6.45 -51.93 -0.33 1.50 16 21 C -0.10 -1.45 6.46 -26.52 -0.17 -1.62 16 22 C -0.17 -2.48 6.26 -104.10 -0.65 -3.13 16 23 C -0.07 -0.91 10.03 -39.72 -0.40 -1.31 16 24 C -0.15 -1.75 10.07 -39.52 -0.40 -2.15 16 25 C -0.09 -1.03 10.02 -39.67 -0.40 -1.43 16 26 C -0.14 -1.84 10.06 -39.30 -0.40 -2.23 16 27 C 0.12 1.82 6.60 -38.96 -0.26 1.56 16 28 O -0.28 -4.58 10.55 -38.41 -0.41 -4.98 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 1.14 6.25 -51.93 -0.32 0.82 16 32 H 0.09 1.05 7.85 -51.93 -0.41 0.64 16 33 H 0.08 1.11 6.29 -51.93 -0.33 0.79 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 1.18 5.71 -51.93 -0.30 0.88 16 37 H 0.07 1.13 8.01 -51.93 -0.42 0.71 16 38 H 0.04 0.71 8.07 -51.93 -0.42 0.29 16 39 H 0.05 0.95 5.36 -51.93 -0.28 0.67 16 40 H 0.03 0.75 7.41 -51.93 -0.38 0.36 16 41 H 0.05 1.13 7.25 -51.93 -0.38 0.75 16 42 H 0.00 -0.09 8.04 -51.93 -0.42 -0.51 16 43 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 44 H 0.11 1.51 8.14 -51.93 -0.42 1.09 16 45 H 0.10 1.60 5.37 -51.93 -0.28 1.32 16 46 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 47 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 48 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 49 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 LS Contribution 386.89 15.07 5.83 5.83 Total: -1.00 -30.07 386.89 -9.83 -39.90 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -7.61 Total: 3.10 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: -2.12 Total: -2.11 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: -0.34 Total: -47.67 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -0.56 Total: -14.72 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.03 Total: 15.66 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.07 -9.83 -39.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700972998.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.210 kcal (2) G-P(sol) polarization free energy of solvation -30.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds