Wall clock time and date at job start Tue Mar 31 2020 16:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47091 * 2 1 4 4 N 1.46498 * 109.47069 * 239.99891 * 2 1 3 5 5 C 1.46502 * 120.00268 * 243.90573 * 4 2 1 6 6 C 1.53002 * 109.46899 * 84.25018 * 5 4 2 7 7 N 1.46495 * 109.46875 * 183.20187 * 6 5 4 8 8 C 1.46499 * 120.00130 * 90.00304 * 7 6 5 9 9 C 1.36939 * 120.00029 * 269.99533 * 7 6 5 10 10 H 1.07998 * 119.99565 * 24.28695 * 9 7 6 11 11 C 1.38809 * 120.00024 * 204.27954 * 9 7 6 12 12 N 1.31622 * 120.00341 * 9.80517 * 11 9 7 13 13 Si 1.86802 * 119.99677 * 189.80511 * 11 9 7 14 14 H 1.48493 * 109.47238 * 90.00282 * 13 11 9 15 15 H 1.48505 * 109.46626 * 210.00055 * 13 11 9 16 16 H 1.48499 * 109.47148 * 329.99763 * 13 11 9 17 17 C 1.34775 * 119.99606 * 63.90926 * 4 2 1 18 18 O 1.21285 * 120.00440 * 354.96146 * 17 4 2 19 19 C 1.50703 * 120.00110 * 174.96452 * 17 4 2 20 20 H 1.09002 * 110.66376 * 321.90388 * 19 17 4 21 21 C 1.54703 * 110.74987 * 85.31781 * 19 17 4 22 22 C 1.51647 * 101.92712 * 93.04936 * 21 19 17 23 23 C 1.37739 * 132.17498 * 195.85129 * 22 21 19 24 24 C 1.38343 * 119.98091 * 179.02821 * 23 22 21 25 25 C 1.38287 * 119.76717 * 359.97438 * 24 23 22 26 26 C 1.37937 * 120.34961 * 0.22161 * 25 24 23 27 27 C 1.38882 * 107.04109 * 15.35678 * 22 21 19 28 28 O 1.36143 * 111.23247 * 1.11239 * 27 22 21 29 29 H 1.08998 * 109.47177 * 181.59668 * 1 2 3 30 30 H 1.09004 * 109.46754 * 301.58966 * 1 2 3 31 31 H 1.08994 * 109.47122 * 61.59170 * 1 2 3 32 32 H 1.09005 * 109.46899 * 119.99864 * 2 1 3 33 33 H 1.09000 * 109.46816 * 306.79128 * 3 2 1 34 34 H 1.09007 * 109.46649 * 66.78776 * 3 2 1 35 35 H 1.08998 * 109.46705 * 186.78623 * 3 2 1 36 36 H 1.08995 * 109.46719 * 204.24871 * 5 4 2 37 37 H 1.08997 * 109.47150 * 324.25402 * 5 4 2 38 38 H 1.09002 * 109.47184 * 303.20302 * 6 5 4 39 39 H 1.08998 * 109.47060 * 63.20151 * 6 5 4 40 40 H 1.09002 * 109.47031 * 93.75396 * 8 7 6 41 41 H 1.08997 * 109.47464 * 213.76026 * 8 7 6 42 42 H 1.09004 * 109.46607 * 333.75865 * 8 7 6 43 43 H 0.96998 * 120.00155 * 179.97438 * 12 11 9 44 44 H 1.09007 * 110.93778 * 211.20230 * 21 19 17 45 45 H 1.08994 * 110.93951 * 334.89032 * 21 19 17 46 46 H 1.08001 * 120.00819 * 359.00897 * 23 22 21 47 47 H 1.08004 * 120.11816 * 180.02562 * 24 23 22 48 48 H 1.07997 * 119.82631 * 180.19798 * 25 24 23 49 49 H 1.08000 * 119.87950 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.7886 -1.9297 -1.0635 6 6 1.8298 -3.1145 -0.9299 7 7 2.5987 -4.3437 -0.7207 8 6 2.9329 -4.7763 0.6385 9 6 3.0049 -5.0885 -1.7956 10 1 3.1215 -4.6220 -2.7626 11 6 3.2670 -6.4430 -1.6423 12 7 2.9437 -7.0532 -0.5217 13 14 4.0784 -7.3998 -3.0263 14 1 5.5536 -7.3497 -2.8641 15 1 3.6234 -8.8129 -2.9841 16 1 3.7030 -6.7977 -4.3308 17 6 1.7589 -0.1860 -2.4186 18 8 1.0452 0.7878 -2.5339 19 6 2.3557 -0.8317 -3.6426 20 1 3.3733 -1.1676 -3.4428 21 6 1.4726 -2.0051 -4.1289 22 6 0.5816 -1.3245 -5.1501 23 6 -0.5985 -1.7069 -5.7486 24 6 -1.2211 -0.8631 -6.6509 25 6 -0.6547 0.3630 -6.9478 26 6 0.5291 0.7463 -6.3526 27 6 1.1649 -0.0996 -5.4470 28 8 2.3278 0.0721 -4.7603 29 1 -0.3633 -1.0272 0.0286 30 1 -0.3633 0.5384 0.8754 31 1 -0.3633 0.4889 -0.9039 32 1 1.8933 -0.5138 0.8900 33 1 1.5808 1.9902 -0.8230 34 1 1.7792 1.9201 0.9446 35 1 3.1232 1.4449 -0.1214 36 1 3.4132 -2.0655 -1.9464 37 1 3.4202 -1.8717 -0.1770 38 1 1.1669 -2.9514 -0.0801 39 1 1.2374 -3.2069 -1.8402 40 1 2.1757 -5.4754 0.9937 41 1 3.9066 -5.2662 0.6348 42 1 2.9648 -3.9092 1.2982 43 1 3.1265 -7.9998 -0.4147 44 1 2.0788 -2.7811 -4.5966 45 1 0.8829 -2.4148 -3.3089 46 1 -1.0374 -2.6654 -5.5138 47 1 -2.1468 -1.1605 -7.1213 48 1 -1.1416 1.0239 -7.6496 49 1 0.9650 1.7054 -6.5902 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700972998.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:45 Heat of formation + Delta-G solvation = -20.058879 kcal Electronic energy + Delta-G solvation = -30161.118098 eV Core-core repulsion = 26282.365030 eV Total energy + Delta-G solvation = -3878.753068 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.64999 -40.75161 -38.39988 -37.90425 -36.69608 -34.58433 -33.52711 -32.83304 -31.02153 -30.37691 -29.41746 -28.08091 -27.84247 -25.80500 -25.10405 -23.57484 -22.99690 -22.54267 -22.30852 -20.20393 -18.71309 -18.55426 -18.03077 -17.96525 -16.92150 -16.75722 -16.58439 -16.31265 -15.95001 -15.54767 -15.13127 -15.04309 -14.72305 -14.65393 -14.56337 -14.31489 -14.17935 -14.02994 -13.94216 -13.67696 -13.18943 -13.05169 -12.92912 -12.82421 -12.76144 -12.70355 -12.66779 -12.56511 -12.40130 -12.12762 -12.08174 -11.97535 -11.87863 -11.74658 -11.48427 -10.64510 -10.58822 -9.87054 -9.82506 -9.11419 -8.68853 -7.78500 -5.29253 0.32194 0.39985 1.35344 1.50020 1.51898 1.58643 1.76410 2.32006 2.54206 2.78220 3.19590 3.35373 3.37650 3.47816 3.79917 3.86467 3.97719 4.02309 4.10888 4.15206 4.20840 4.26963 4.34225 4.49128 4.51195 4.54918 4.63795 4.64049 4.66275 4.75721 4.79399 4.87837 4.91070 4.94467 4.97607 5.06427 5.21176 5.26574 5.34771 5.37056 5.42802 5.44777 5.53607 5.62034 5.67381 5.70766 5.78538 6.16124 6.28508 6.39528 7.05563 7.19672 7.89398 8.33718 9.24645 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.009691 B = 0.004605 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2888.662402 B = 6078.415076 C = 8144.186107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.138 3.862 3 C -0.159 4.159 4 N -0.592 5.592 5 C 0.092 3.908 6 C 0.139 3.861 7 N -0.612 5.612 8 C 0.176 3.824 9 C -0.254 4.254 10 H 0.079 0.921 11 C -0.048 4.048 12 N -0.939 5.939 13 Si 0.958 3.042 14 H -0.288 1.288 15 H -0.301 1.301 16 H -0.266 1.266 17 C 0.505 3.495 18 O -0.551 6.551 19 C 0.061 3.939 20 H 0.153 0.847 21 C -0.093 4.093 22 C -0.187 4.187 23 C -0.083 4.083 24 C -0.147 4.147 25 C -0.085 4.085 26 C -0.149 4.149 27 C 0.085 3.915 28 O -0.297 6.297 29 H 0.049 0.951 30 H 0.082 0.918 31 H 0.049 0.951 32 H 0.105 0.895 33 H 0.051 0.949 34 H 0.084 0.916 35 H 0.053 0.947 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.045 0.955 39 H 0.047 0.953 40 H 0.000 1.000 41 H 0.020 0.980 42 H 0.032 0.968 43 H 0.246 0.754 44 H 0.109 0.891 45 H 0.094 0.906 46 H 0.136 0.864 47 H 0.157 0.843 48 H 0.163 0.837 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.888 14.964 -5.640 16.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.036 3.964 3 C -0.217 4.217 4 N -0.326 5.326 5 C -0.033 4.033 6 C 0.012 3.988 7 N -0.336 5.336 8 C 0.031 3.969 9 C -0.385 4.385 10 H 0.097 0.903 11 C -0.244 4.244 12 N -0.586 5.586 13 Si 0.788 3.212 14 H -0.215 1.215 15 H -0.228 1.228 16 H -0.190 1.190 17 C 0.292 3.708 18 O -0.430 6.430 19 C 0.002 3.998 20 H 0.170 0.830 21 C -0.130 4.130 22 C -0.187 4.187 23 C -0.101 4.101 24 C -0.165 4.165 25 C -0.103 4.103 26 C -0.168 4.168 27 C 0.040 3.960 28 O -0.210 6.210 29 H 0.068 0.932 30 H 0.101 0.899 31 H 0.069 0.931 32 H 0.123 0.877 33 H 0.071 0.929 34 H 0.103 0.897 35 H 0.073 0.927 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.018 0.982 41 H 0.038 0.962 42 H 0.050 0.950 43 H 0.055 0.945 44 H 0.127 0.873 45 H 0.112 0.888 46 H 0.154 0.846 47 H 0.175 0.825 48 H 0.181 0.819 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.052 15.468 -5.670 17.232 hybrid contribution 0.625 -1.220 -0.209 1.387 sum -4.426 14.248 -5.878 16.036 Atomic orbital electron populations 1.22126 0.95038 1.01821 1.02882 1.21242 0.94664 0.93624 0.86911 1.22109 1.00832 0.95567 1.03151 1.48163 1.54086 1.25090 1.05258 1.22507 0.94686 0.82327 1.03732 1.21253 0.92519 0.85426 0.99632 1.44027 1.62436 1.24122 1.02991 1.20565 0.97827 0.94499 0.84026 1.19522 1.38208 0.89893 0.90832 0.90294 1.25737 1.02004 0.97569 0.99050 1.70215 1.51804 1.09433 1.27192 0.85393 0.78170 0.77670 0.80009 1.21464 1.22833 1.19013 1.20871 0.80850 0.83991 0.85100 1.90622 1.37888 1.28057 1.86395 1.23527 1.03396 0.88177 0.84731 0.82955 1.21782 0.96627 0.96645 0.97979 1.20959 0.98943 0.95771 1.03062 1.20645 0.92875 1.00684 0.95856 1.21421 1.01613 0.94532 0.98889 1.21264 0.93508 0.96928 0.98562 1.20582 0.96824 0.99585 0.99785 1.19885 0.86573 0.94430 0.95083 1.86848 1.34795 1.61331 1.38029 0.93160 0.89906 0.93144 0.87725 0.92949 0.89685 0.92749 0.90033 0.89596 0.93711 0.93470 0.98172 0.96153 0.94967 0.94484 0.87264 0.88796 0.84591 0.82505 0.81923 0.84715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.99 9.19 71.98 0.66 -3.33 16 2 C 0.14 3.34 3.28 44.99 0.15 3.48 16 3 C -0.16 -3.64 8.94 71.98 0.64 -3.00 16 4 N -0.59 -16.33 2.42 -797.82 -1.93 -18.26 16 5 C 0.09 2.65 5.59 86.38 0.48 3.13 16 6 C 0.14 4.88 5.97 86.38 0.52 5.40 16 7 N -0.61 -27.33 2.92 -726.95 -2.12 -29.46 16 8 C 0.18 7.96 8.96 127.77 1.15 9.11 16 9 C -0.25 -12.53 9.65 84.03 0.81 -11.72 16 10 H 0.08 3.65 7.85 -2.91 -0.02 3.62 16 11 C -0.05 -2.54 5.15 84.86 0.44 -2.11 16 12 N -0.94 -53.06 10.62 21.65 0.23 -52.83 16 13 Si 0.96 42.61 29.56 68.60 2.03 44.64 16 14 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 15 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 16 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 17 C 0.50 15.83 6.28 87.66 0.55 16.38 16 18 O -0.55 -20.16 12.62 14.37 0.18 -19.98 16 19 C 0.06 1.81 3.17 30.43 0.10 1.90 16 20 H 0.15 3.92 6.45 -2.39 -0.02 3.91 16 21 C -0.09 -2.74 6.46 30.73 0.20 -2.54 16 22 C -0.19 -5.56 6.26 -19.53 -0.12 -5.68 16 23 C -0.08 -2.09 10.03 22.18 0.22 -1.87 16 24 C -0.15 -3.02 10.07 22.31 0.22 -2.80 16 25 C -0.08 -1.73 10.02 22.21 0.22 -1.51 16 26 C -0.15 -3.88 10.06 22.45 0.23 -3.65 16 27 C 0.08 2.64 6.60 22.67 0.15 2.79 16 28 O -0.30 -9.77 10.55 -77.77 -0.82 -10.59 16 29 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 31 H 0.05 1.52 6.25 -2.39 -0.01 1.50 16 32 H 0.10 2.20 7.85 -2.38 -0.02 2.18 16 33 H 0.05 1.48 6.29 -2.39 -0.02 1.47 16 34 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 35 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.08 2.32 5.71 -2.39 -0.01 2.30 16 37 H 0.09 2.34 8.01 -2.39 -0.02 2.32 16 38 H 0.04 1.53 8.07 -2.39 -0.02 1.51 16 39 H 0.05 1.71 5.36 -2.39 -0.01 1.70 16 40 H 0.00 0.00 7.41 -2.39 -0.02 -0.02 16 41 H 0.02 0.99 7.25 -2.39 -0.02 0.97 16 42 H 0.03 1.19 8.04 -2.38 -0.02 1.18 16 43 H 0.25 13.68 8.31 -92.71 -0.77 12.91 16 44 H 0.11 3.07 8.14 -2.38 -0.02 3.05 16 45 H 0.09 2.89 5.37 -2.39 -0.01 2.88 16 46 H 0.14 3.02 8.06 -2.91 -0.02 2.99 16 47 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 48 H 0.16 2.10 8.06 -2.91 -0.02 2.07 16 49 H 0.13 3.07 8.06 -2.91 -0.02 3.05 16 Total: -1.00 -65.72 386.89 5.12 -60.60 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: 0.94 Total: 21.87 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: 6.61 Total: 4.01 kcal Atomic # 7 Polarization: -96.72 SS G_CDS: -3.83 Total: -100.55 kcal Atomic # 8 Polarization: -29.93 SS G_CDS: -0.64 Total: -30.57 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -65.72 5.12 -60.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700972998.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.546 kcal (2) G-P(sol) polarization free energy of solvation -65.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds