Wall clock time and date at job start Tue Mar 31 2020 16:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52994 * 109.47372 * 2 1 4 4 H 1.09002 * 109.46757 * 305.00001 * 3 2 1 5 5 O 1.42904 * 109.47112 * 64.99955 * 3 2 1 6 6 C 1.35907 * 116.99736 * 260.42801 * 5 3 2 7 7 C 1.38755 * 120.05437 * 5.66660 * 6 5 3 8 8 C 1.38124 * 119.93657 * 179.70204 * 7 6 5 9 9 C 1.38289 * 120.05972 * 0.59643 * 8 7 6 10 10 C 1.38241 * 120.10915 * 359.68382 * 9 8 7 11 11 C 1.38169 * 120.05834 * 0.02562 * 10 9 8 12 12 C 1.50703 * 120.03149 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47402 * 185.00027 * 3 2 1 14 14 O 1.21284 * 120.00247 * 245.00147 * 13 3 2 15 15 N 1.34772 * 120.00086 * 64.99406 * 13 3 2 16 16 C 1.46495 * 120.00278 * 180.02562 * 15 13 3 17 17 H 1.09001 * 112.84930 * 336.20302 * 16 15 13 18 18 C 1.53787 * 113.61405 * 107.50741 * 16 15 13 19 19 C 1.53780 * 87.08063 * 139.98402 * 18 16 15 20 20 H 1.08999 * 113.69062 * 89.12600 * 19 18 16 21 21 N 1.46502 * 113.61155 * 220.01885 * 19 18 16 22 22 C 1.36935 * 119.99745 * 252.21988 * 21 19 18 23 23 H 1.08003 * 120.00347 * 0.27708 * 22 21 19 24 24 C 1.38819 * 119.99874 * 180.27353 * 22 21 19 25 25 N 1.31621 * 119.99827 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99806 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.46655 * 90.00698 * 26 24 22 28 28 H 1.48500 * 109.46829 * 210.00378 * 26 24 22 29 29 H 1.48492 * 109.47599 * 330.00471 * 26 24 22 30 30 C 1.53779 * 113.61820 * 205.00438 * 16 15 13 31 31 H 1.08995 * 109.46621 * 59.99993 * 1 2 3 32 32 H 1.08998 * 109.46933 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.46881 * 300.00382 * 1 2 3 34 34 H 1.09003 * 109.47038 * 239.99384 * 2 1 3 35 35 H 1.09004 * 109.47172 * 120.00187 * 2 1 3 36 36 H 1.07994 * 120.03266 * 359.97438 * 7 6 5 37 37 H 1.08005 * 119.96778 * 180.30441 * 8 7 6 38 38 H 1.08003 * 119.94348 * 179.69795 * 9 8 7 39 39 H 1.08003 * 119.97117 * 180.02562 * 10 9 8 40 40 H 1.09005 * 109.46359 * 270.02215 * 12 11 10 41 41 H 1.08997 * 109.46721 * 30.01905 * 12 11 10 42 42 H 1.08997 * 109.47380 * 150.02156 * 12 11 10 43 43 H 0.97002 * 119.99660 * 0.02562 * 15 13 3 44 44 H 1.09000 * 113.61319 * 25.43145 * 18 16 15 45 45 H 1.09007 * 113.61254 * 254.53143 * 18 16 15 46 46 H 0.97000 * 120.00175 * 72.49625 * 21 19 18 47 47 H 0.97000 * 119.99690 * 180.02562 * 25 24 22 48 48 H 1.09003 * 113.61914 * 105.47031 * 30 16 15 49 49 H 1.09008 * 113.69161 * 334.57739 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9814 -0.8418 5 8 1.6621 2.0813 1.2211 6 6 0.5686 2.8875 1.1827 7 6 -0.1947 2.9687 0.0269 8 6 -1.3091 3.7841 -0.0074 9 6 -1.6572 4.5285 1.1048 10 6 -0.8949 4.4537 2.2557 11 6 0.2173 3.6350 2.2971 12 6 1.0482 3.5544 3.5518 13 6 3.5420 1.4442 -0.1238 14 8 4.2252 1.8610 0.7875 15 7 4.1261 0.9826 -1.2473 16 6 5.5861 0.9838 -1.3675 17 1 6.0634 1.7203 -0.7210 18 6 6.2130 -0.4175 -1.2757 19 6 7.1703 0.0234 -2.3955 20 1 8.0822 0.4963 -2.0311 21 7 7.4291 -1.0200 -3.3908 22 6 8.6473 -1.6443 -3.4274 23 1 9.4158 -1.3706 -2.7196 24 6 8.8945 -2.6290 -4.3742 25 7 7.9580 -2.9621 -5.2370 26 14 10.5566 -3.4800 -4.4245 27 1 10.5254 -4.6789 -3.5487 28 1 10.8592 -3.8930 -5.8184 29 1 11.6063 -2.5449 -3.9463 30 6 6.0846 1.0256 -2.8216 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 1.8934 -0.5139 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 0.0797 2.3916 -0.8437 37 1 -1.9064 3.8439 -0.9052 38 1 -2.5261 5.1691 1.0744 39 1 -1.1691 5.0358 3.1232 40 1 1.8319 4.3113 3.5177 41 1 0.4127 3.7283 4.4201 42 1 1.5008 2.5656 3.6250 43 1 3.5797 0.6495 -1.9763 44 1 5.5356 -1.2189 -1.5706 45 1 6.7117 -0.6114 -0.3260 46 1 6.7389 -1.2658 -4.0265 47 1 8.1307 -3.6504 -5.8983 48 1 6.4796 1.9966 -3.1202 49 1 5.3730 0.6190 -3.5404 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713202364.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:43 Heat of formation + Delta-G solvation = -20.299292 kcal Electronic energy + Delta-G solvation = -28147.931637 eV Core-core repulsion = 24269.168144 eV Total energy + Delta-G solvation = -3878.763493 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.05463 -39.75015 -38.29526 -37.32505 -34.49803 -33.92794 -32.87935 -32.47572 -30.49583 -29.93892 -27.93768 -26.90081 -25.17001 -24.51825 -23.42990 -22.71974 -21.84732 -21.45017 -20.29834 -19.33899 -18.56730 -17.50536 -17.05791 -16.37771 -16.14628 -15.88602 -15.71912 -14.94890 -14.75327 -14.60555 -14.48179 -14.15337 -14.04285 -13.65928 -13.40669 -13.07834 -13.00118 -12.87174 -12.59120 -12.49412 -12.37883 -12.15330 -12.07316 -11.96329 -11.66678 -11.47097 -11.30281 -11.22327 -10.95077 -10.81614 -10.65228 -10.53433 -10.36167 -10.08452 -9.75321 -9.58970 -9.09834 -8.94953 -8.82945 -8.34429 -7.02145 -5.83404 -3.12282 1.02453 1.15141 2.47300 2.53609 3.40706 3.43547 3.46408 3.47241 3.47935 4.28224 4.39297 4.46693 4.52008 4.56001 4.61471 4.79377 4.81665 4.97432 5.00943 5.05851 5.12251 5.18156 5.28153 5.32848 5.34728 5.40445 5.43865 5.54619 5.58922 5.60793 5.71688 5.82351 5.88666 5.89605 6.00770 6.04912 6.06999 6.18600 6.20807 6.25299 6.26141 6.41503 6.50440 6.57423 6.68576 6.99878 7.12308 7.51194 7.66196 8.17239 8.35070 9.46581 10.02724 10.37298 11.38921 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.027241 B = 0.002006 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.632253 B =13957.084819 C =14283.883441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.138 4.138 3 C 0.064 3.936 4 H 0.101 0.899 5 O -0.278 6.278 6 C 0.132 3.868 7 C -0.210 4.210 8 C -0.086 4.086 9 C -0.157 4.157 10 C -0.085 4.085 11 C -0.114 4.114 12 C -0.107 4.107 13 C 0.511 3.489 14 O -0.521 6.521 15 N -0.709 5.709 16 C 0.118 3.882 17 H 0.110 0.890 18 C -0.175 4.175 19 C 0.169 3.831 20 H 0.080 0.920 21 N -0.710 5.710 22 C -0.244 4.244 23 H 0.072 0.928 24 C -0.013 4.013 25 N -0.933 5.933 26 Si 0.908 3.092 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.281 1.281 30 C -0.159 4.159 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.132 0.868 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.127 0.873 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.399 0.601 44 H 0.080 0.920 45 H 0.060 0.940 46 H 0.385 0.615 47 H 0.256 0.744 48 H 0.067 0.933 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.015 13.417 11.627 28.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.176 4.176 3 C 0.004 3.996 4 H 0.119 0.881 5 O -0.190 6.190 6 C 0.086 3.914 7 C -0.228 4.228 8 C -0.104 4.104 9 C -0.175 4.175 10 C -0.103 4.103 11 C -0.115 4.115 12 C -0.163 4.163 13 C 0.295 3.705 14 O -0.396 6.396 15 N -0.361 5.361 16 C 0.014 3.986 17 H 0.128 0.872 18 C -0.218 4.218 19 C 0.056 3.944 20 H 0.098 0.902 21 N -0.348 5.348 22 C -0.376 4.376 23 H 0.090 0.910 24 C -0.209 4.209 25 N -0.581 5.581 26 Si 0.739 3.261 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.207 1.207 30 C -0.199 4.199 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.150 0.850 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.145 0.855 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.234 0.766 44 H 0.099 0.901 45 H 0.078 0.922 46 H 0.219 0.781 47 H 0.066 0.934 48 H 0.086 0.914 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -21.163 13.595 12.451 28.066 hybrid contribution 0.189 -0.845 -0.958 1.291 sum -20.974 12.750 11.493 27.103 Atomic orbital electron populations 1.21923 0.94429 1.02628 1.02282 1.21979 0.97334 0.93751 1.04519 1.22435 0.93431 0.95487 0.88264 0.88106 1.86213 1.42458 1.58061 1.32256 1.18900 0.87228 0.91051 0.94221 1.21357 0.98561 1.04698 0.98183 1.20910 0.95868 0.95284 0.98376 1.21034 1.01100 1.01706 0.93654 1.20897 0.93752 0.97314 0.98315 1.19314 0.98321 0.98521 0.95360 1.20626 0.98820 1.03470 0.93420 1.20234 0.89049 0.78119 0.83063 1.90728 1.64707 1.45594 1.38575 1.45971 1.08339 1.64081 1.17688 1.22548 0.77903 0.99716 0.98425 0.87203 1.24341 1.00382 0.95485 1.01574 1.21344 0.93837 0.89359 0.89847 0.90166 1.42349 1.15075 1.40959 1.36369 1.19318 0.91164 1.14352 1.12724 0.90964 1.24773 0.98076 0.99808 0.98240 1.69656 1.32881 1.34334 1.21214 0.86170 0.83498 0.79603 0.76803 1.21666 1.21756 1.20672 1.23879 1.00180 1.01048 0.94753 0.92317 0.91764 0.92040 0.89495 0.89904 0.85014 0.85864 0.86007 0.85479 0.91219 0.91834 0.90873 0.76615 0.90139 0.92159 0.78099 0.93448 0.91428 0.89916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.17 8.49 37.16 0.32 -0.85 16 2 C -0.14 -1.21 5.61 -26.73 -0.15 -1.36 16 3 C 0.06 0.67 2.53 -27.89 -0.07 0.60 16 4 H 0.10 0.85 5.42 -51.93 -0.28 0.57 16 5 O -0.28 -3.47 8.16 -39.31 -0.32 -3.79 16 6 C 0.13 1.44 5.63 -39.22 -0.22 1.22 16 7 C -0.21 -1.88 7.38 -39.43 -0.29 -2.17 16 8 C -0.09 -0.68 10.04 -39.60 -0.40 -1.08 16 9 C -0.16 -1.21 10.04 -39.56 -0.40 -1.60 16 10 C -0.08 -0.71 9.70 -39.61 -0.38 -1.10 16 11 C -0.11 -1.18 5.89 -104.47 -0.62 -1.79 16 12 C -0.11 -1.01 9.79 36.01 0.35 -0.66 16 13 C 0.51 6.99 7.18 -10.99 -0.08 6.91 16 14 O -0.52 -9.40 16.11 -14.30 -0.23 -9.63 16 15 N -0.71 -8.68 5.25 -53.02 -0.28 -8.95 16 16 C 0.12 1.72 4.24 -67.12 -0.28 1.44 16 17 H 0.11 1.71 7.46 -51.93 -0.39 1.32 16 18 C -0.18 -2.99 7.68 -25.92 -0.20 -3.19 16 19 C 0.17 3.21 4.48 -67.12 -0.30 2.91 16 20 H 0.08 1.53 8.10 -51.93 -0.42 1.11 16 21 N -0.71 -17.15 5.40 -52.64 -0.28 -17.43 16 22 C -0.24 -6.65 9.97 -15.06 -0.15 -6.80 16 23 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 24 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 25 N -0.93 -27.54 13.06 55.49 0.72 -26.82 16 26 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 28 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 29 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 30 C -0.16 -2.40 7.58 -25.92 -0.20 -2.60 16 31 H 0.06 0.37 6.74 -51.93 -0.35 0.02 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.53 6.54 -51.93 -0.34 0.20 16 34 H 0.09 0.65 7.77 -51.93 -0.40 0.25 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.13 0.97 4.29 -52.49 -0.23 0.75 16 37 H 0.12 0.70 8.06 -52.48 -0.42 0.27 16 38 H 0.12 0.67 8.06 -52.48 -0.42 0.25 16 39 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.46 8.09 -51.93 -0.42 0.05 16 42 H 0.07 0.79 7.53 -51.93 -0.39 0.40 16 43 H 0.40 3.81 8.43 -40.82 -0.34 3.47 16 44 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 45 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.38 9.77 7.92 -40.82 -0.32 9.45 16 47 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 48 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 49 H 0.08 1.22 8.10 -51.92 -0.42 0.80 16 LS Contribution 396.15 15.07 5.97 5.97 Total: -1.00 -32.96 396.15 -10.27 -43.23 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -7.66 Total: 10.94 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -3.16 Total: -10.58 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: 0.16 Total: -53.21 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -0.55 Total: -13.42 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.96 -10.27 -43.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713202364.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.929 kcal (2) G-P(sol) polarization free energy of solvation -32.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds