Wall clock time and date at job start Tue Mar 31 2020 16:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52994 * 109.47372 * 2 1 4 4 H 1.09002 * 109.46757 * 305.00001 * 3 2 1 5 5 O 1.42904 * 109.47112 * 64.99955 * 3 2 1 6 6 C 1.35907 * 116.99736 * 260.42801 * 5 3 2 7 7 C 1.38755 * 120.05437 * 5.66660 * 6 5 3 8 8 C 1.38124 * 119.93657 * 179.70204 * 7 6 5 9 9 C 1.38289 * 120.05972 * 0.59643 * 8 7 6 10 10 C 1.38241 * 120.10915 * 359.68382 * 9 8 7 11 11 C 1.38169 * 120.05834 * 0.02562 * 10 9 8 12 12 C 1.50703 * 120.03149 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47402 * 185.00027 * 3 2 1 14 14 O 1.21284 * 120.00247 * 245.00147 * 13 3 2 15 15 N 1.34772 * 120.00086 * 64.99406 * 13 3 2 16 16 C 1.46495 * 120.00278 * 180.02562 * 15 13 3 17 17 H 1.09001 * 112.84930 * 336.20302 * 16 15 13 18 18 C 1.53787 * 113.61405 * 107.50741 * 16 15 13 19 19 C 1.53780 * 87.08063 * 139.98402 * 18 16 15 20 20 H 1.08999 * 113.69062 * 89.12600 * 19 18 16 21 21 N 1.46502 * 113.61155 * 220.01885 * 19 18 16 22 22 C 1.36935 * 119.99745 * 252.21988 * 21 19 18 23 23 H 1.08003 * 120.00347 * 0.27708 * 22 21 19 24 24 C 1.38819 * 119.99874 * 180.27353 * 22 21 19 25 25 N 1.31621 * 119.99827 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99806 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.46655 * 90.00698 * 26 24 22 28 28 H 1.48500 * 109.46829 * 210.00378 * 26 24 22 29 29 H 1.48492 * 109.47599 * 330.00471 * 26 24 22 30 30 C 1.53779 * 113.61820 * 205.00438 * 16 15 13 31 31 H 1.08995 * 109.46621 * 59.99993 * 1 2 3 32 32 H 1.08998 * 109.46933 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.46881 * 300.00382 * 1 2 3 34 34 H 1.09003 * 109.47038 * 239.99384 * 2 1 3 35 35 H 1.09004 * 109.47172 * 120.00187 * 2 1 3 36 36 H 1.07994 * 120.03266 * 359.97438 * 7 6 5 37 37 H 1.08005 * 119.96778 * 180.30441 * 8 7 6 38 38 H 1.08003 * 119.94348 * 179.69795 * 9 8 7 39 39 H 1.08003 * 119.97117 * 180.02562 * 10 9 8 40 40 H 1.09005 * 109.46359 * 270.02215 * 12 11 10 41 41 H 1.08997 * 109.46721 * 30.01905 * 12 11 10 42 42 H 1.08997 * 109.47380 * 150.02156 * 12 11 10 43 43 H 0.97002 * 119.99660 * 0.02562 * 15 13 3 44 44 H 1.09000 * 113.61319 * 25.43145 * 18 16 15 45 45 H 1.09007 * 113.61254 * 254.53143 * 18 16 15 46 46 H 0.97000 * 120.00175 * 72.49625 * 21 19 18 47 47 H 0.97000 * 119.99690 * 180.02562 * 25 24 22 48 48 H 1.09003 * 113.61914 * 105.47031 * 30 16 15 49 49 H 1.09008 * 113.69161 * 334.57739 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9814 -0.8418 5 8 1.6621 2.0813 1.2211 6 6 0.5686 2.8875 1.1827 7 6 -0.1947 2.9687 0.0269 8 6 -1.3091 3.7841 -0.0074 9 6 -1.6572 4.5285 1.1048 10 6 -0.8949 4.4537 2.2557 11 6 0.2173 3.6350 2.2971 12 6 1.0482 3.5544 3.5518 13 6 3.5420 1.4442 -0.1238 14 8 4.2252 1.8610 0.7875 15 7 4.1261 0.9826 -1.2473 16 6 5.5861 0.9838 -1.3675 17 1 6.0634 1.7203 -0.7210 18 6 6.2130 -0.4175 -1.2757 19 6 7.1703 0.0234 -2.3955 20 1 8.0822 0.4963 -2.0311 21 7 7.4291 -1.0200 -3.3908 22 6 8.6473 -1.6443 -3.4274 23 1 9.4158 -1.3706 -2.7196 24 6 8.8945 -2.6290 -4.3742 25 7 7.9580 -2.9621 -5.2370 26 14 10.5566 -3.4800 -4.4245 27 1 10.5254 -4.6789 -3.5487 28 1 10.8592 -3.8930 -5.8184 29 1 11.6063 -2.5449 -3.9463 30 6 6.0846 1.0256 -2.8216 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 1.8934 -0.5139 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 0.0797 2.3916 -0.8437 37 1 -1.9064 3.8439 -0.9052 38 1 -2.5261 5.1691 1.0744 39 1 -1.1691 5.0358 3.1232 40 1 1.8319 4.3113 3.5177 41 1 0.4127 3.7283 4.4201 42 1 1.5008 2.5656 3.6250 43 1 3.5797 0.6495 -1.9763 44 1 5.5356 -1.2189 -1.5706 45 1 6.7117 -0.6114 -0.3260 46 1 6.7389 -1.2658 -4.0265 47 1 8.1307 -3.6504 -5.8983 48 1 6.4796 1.9966 -3.1202 49 1 5.3730 0.6190 -3.5404 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713202364.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:42 Heat of formation + Delta-G solvation = -39.768457 kcal Electronic energy + Delta-G solvation = -28148.775883 eV Core-core repulsion = 24269.168144 eV Total energy + Delta-G solvation = -3879.607740 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.90379 -40.81497 -39.45214 -38.26584 -35.84584 -35.12039 -34.06851 -33.35739 -31.82267 -31.12280 -28.79073 -27.60461 -26.55621 -26.28436 -24.22369 -23.95430 -22.54844 -22.47309 -21.34914 -20.70601 -19.32953 -19.17768 -18.33196 -17.59139 -16.92421 -16.80468 -16.50597 -16.22546 -16.10244 -15.74287 -15.60312 -15.27184 -14.95582 -14.80228 -14.51892 -14.35041 -14.02576 -13.67586 -13.65178 -13.33455 -13.29152 -13.18223 -13.16587 -13.01449 -12.83665 -12.78914 -12.30502 -12.24465 -12.19136 -12.10654 -12.06834 -11.90380 -11.77155 -11.54132 -11.45806 -10.88724 -10.76399 -10.06584 -9.73214 -9.05205 -8.98599 -7.95524 -5.23155 0.39459 0.49066 1.42035 1.48291 1.48981 1.57307 1.62111 2.51871 2.58791 2.82923 3.35894 3.45992 3.59830 3.68684 3.69698 3.84100 3.88516 3.95575 3.96026 4.15173 4.23881 4.24799 4.30662 4.37617 4.43255 4.47296 4.65632 4.70109 4.72076 4.76435 4.77827 4.88229 4.89950 4.98515 4.99123 5.06087 5.11178 5.14878 5.29291 5.30872 5.33221 5.42466 5.50364 5.54569 5.62705 5.64343 5.87902 6.27100 6.35522 6.52303 7.12688 7.34017 8.09357 8.33112 9.27337 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.027241 B = 0.002006 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.632253 B =13957.084819 C =14283.883441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.134 4.134 3 C 0.069 3.931 4 H 0.127 0.873 5 O -0.304 6.304 6 C 0.106 3.894 7 C -0.213 4.213 8 C -0.089 4.089 9 C -0.157 4.157 10 C -0.089 4.089 11 C -0.139 4.139 12 C -0.103 4.103 13 C 0.510 3.490 14 O -0.570 6.570 15 N -0.696 5.696 16 C 0.136 3.864 17 H 0.103 0.897 18 C -0.169 4.169 19 C 0.150 3.850 20 H 0.077 0.923 21 N -0.722 5.722 22 C -0.245 4.245 23 H 0.075 0.925 24 C -0.074 4.074 25 N -0.967 5.967 26 Si 0.970 3.030 27 H -0.289 1.289 28 H -0.295 1.295 29 H -0.271 1.271 30 C -0.138 4.138 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.046 0.954 34 H 0.103 0.897 35 H 0.063 0.937 36 H 0.147 0.853 37 H 0.149 0.851 38 H 0.147 0.853 39 H 0.147 0.853 40 H 0.062 0.938 41 H 0.083 0.917 42 H 0.051 0.949 43 H 0.416 0.584 44 H 0.075 0.925 45 H 0.051 0.949 46 H 0.377 0.623 47 H 0.251 0.749 48 H 0.082 0.918 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.937 14.541 11.124 30.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.172 4.172 3 C 0.010 3.990 4 H 0.145 0.855 5 O -0.217 6.217 6 C 0.061 3.939 7 C -0.231 4.231 8 C -0.107 4.107 9 C -0.175 4.175 10 C -0.106 4.106 11 C -0.140 4.140 12 C -0.160 4.160 13 C 0.296 3.704 14 O -0.449 6.449 15 N -0.348 5.348 16 C 0.030 3.970 17 H 0.121 0.879 18 C -0.211 4.211 19 C 0.039 3.961 20 H 0.095 0.905 21 N -0.360 5.360 22 C -0.377 4.377 23 H 0.093 0.907 24 C -0.267 4.267 25 N -0.617 5.617 26 Si 0.799 3.201 27 H -0.217 1.217 28 H -0.222 1.222 29 H -0.196 1.196 30 C -0.177 4.177 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.065 0.935 34 H 0.122 0.878 35 H 0.081 0.919 36 H 0.164 0.836 37 H 0.167 0.833 38 H 0.165 0.835 39 H 0.165 0.835 40 H 0.080 0.920 41 H 0.102 0.898 42 H 0.070 0.930 43 H 0.254 0.746 44 H 0.094 0.906 45 H 0.070 0.930 46 H 0.209 0.791 47 H 0.060 0.940 48 H 0.101 0.899 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -23.115 14.748 11.966 29.916 hybrid contribution 0.722 -1.108 -0.718 1.505 sum -22.393 13.640 11.248 28.531 Atomic orbital electron populations 1.21882 0.93100 1.03222 1.02462 1.21986 0.98408 0.92442 1.04351 1.22481 0.90902 0.96783 0.88865 0.85540 1.86180 1.43532 1.58801 1.33183 1.19174 0.87512 0.91772 0.95434 1.21550 0.98657 1.05015 0.97870 1.21286 0.95511 0.94439 0.99425 1.21412 1.01467 1.01477 0.93164 1.21181 0.93047 0.96886 0.99529 1.19578 0.99381 0.99565 0.95482 1.20579 0.98974 1.01934 0.94515 1.20860 0.90442 0.76822 0.82303 1.90706 1.66085 1.47807 1.40278 1.45785 1.07464 1.63514 1.18037 1.22172 0.79290 0.97648 0.97874 0.87869 1.24173 0.99914 0.96882 1.00143 1.21651 0.95155 0.89477 0.89815 0.90498 1.42474 1.13987 1.42141 1.37363 1.19682 0.92205 1.13840 1.11944 0.90738 1.25522 1.01361 1.01155 0.98614 1.69791 1.34599 1.35184 1.22121 0.85191 0.80048 0.78522 0.76313 1.21666 1.22160 1.19558 1.23674 0.98537 1.00426 0.95083 0.90481 0.90960 0.93453 0.87847 0.91859 0.83591 0.83287 0.83503 0.83535 0.91958 0.89819 0.92990 0.74637 0.90609 0.93037 0.79078 0.94007 0.89916 0.88934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 8.49 71.98 0.61 -1.36 16 2 C -0.13 -2.20 5.61 30.59 0.17 -2.03 16 3 C 0.07 1.40 2.53 29.85 0.08 1.47 16 4 H 0.13 1.84 5.42 -2.39 -0.01 1.82 16 5 O -0.30 -7.69 8.16 -73.52 -0.60 -8.29 16 6 C 0.11 2.27 5.63 22.51 0.13 2.39 16 7 C -0.21 -3.38 7.38 22.37 0.17 -3.22 16 8 C -0.09 -1.14 10.04 22.25 0.22 -0.91 16 9 C -0.16 -1.98 10.04 22.28 0.22 -1.76 16 10 C -0.09 -1.34 9.70 22.25 0.22 -1.12 16 11 C -0.14 -2.82 5.89 -19.77 -0.12 -2.94 16 12 C -0.10 -2.03 9.79 71.24 0.70 -1.33 16 13 C 0.51 13.67 7.18 87.66 0.63 14.30 16 14 O -0.57 -20.98 16.11 15.95 0.26 -20.72 16 15 N -0.70 -16.00 5.25 -440.04 -2.31 -18.31 16 16 C 0.14 3.80 4.24 45.52 0.19 4.00 16 17 H 0.10 3.14 7.46 -2.39 -0.02 3.13 16 18 C -0.17 -5.70 7.68 31.12 0.24 -5.46 16 19 C 0.15 5.61 4.48 45.52 0.20 5.81 16 20 H 0.08 2.92 8.10 -2.39 -0.02 2.90 16 21 N -0.72 -34.90 5.40 -320.44 -1.73 -36.63 16 22 C -0.24 -13.33 9.97 84.04 0.84 -12.50 16 23 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 24 C -0.07 -4.18 5.50 84.86 0.47 -3.72 16 25 N -0.97 -57.66 13.06 21.65 0.28 -57.38 16 26 Si 0.97 45.65 29.55 68.60 2.03 47.67 16 27 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 28 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 29 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 30 C -0.14 -3.93 7.58 31.12 0.24 -3.70 16 31 H 0.08 0.73 6.74 -2.39 -0.02 0.71 16 32 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.05 0.78 6.54 -2.39 -0.02 0.76 16 34 H 0.10 1.33 7.77 -2.39 -0.02 1.31 16 35 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 36 H 0.15 1.73 4.29 -2.91 -0.01 1.72 16 37 H 0.15 1.09 8.06 -2.91 -0.02 1.07 16 38 H 0.15 1.07 8.06 -2.91 -0.02 1.05 16 39 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 40 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 41 H 0.08 1.21 8.09 -2.39 -0.02 1.19 16 42 H 0.05 1.21 7.53 -2.39 -0.02 1.19 16 43 H 0.42 6.90 8.43 -92.71 -0.78 6.12 16 44 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 45 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 46 H 0.38 19.21 7.92 -92.71 -0.73 18.47 16 47 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 48 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 49 H 0.09 2.51 8.10 -2.38 -0.02 2.49 16 Total: -1.00 -72.72 396.15 2.58 -70.14 By element: Atomic # 1 Polarization: 36.11 SS G_CDS: -0.55 Total: 35.57 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: 5.20 Total: -12.05 kcal Atomic # 7 Polarization: -108.55 SS G_CDS: -3.76 Total: -112.31 kcal Atomic # 8 Polarization: -28.67 SS G_CDS: -0.34 Total: -29.01 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.67 kcal Total: -72.72 2.58 -70.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713202364.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.373 kcal (2) G-P(sol) polarization free energy of solvation -72.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds