Wall clock time and date at job start Tue Mar 31 2020 16:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.47205 * 2 1 4 4 N 1.46503 * 109.46906 * 180.02562 * 3 2 1 5 5 C 1.36934 * 119.99738 * 264.81484 * 4 3 2 6 6 H 1.08004 * 119.99925 * 141.20280 * 5 4 3 7 7 C 1.38811 * 120.00291 * 321.20103 * 5 4 3 8 8 N 1.31621 * 119.99719 * 341.33724 * 7 5 4 9 9 Si 1.86799 * 120.00072 * 161.33856 * 7 5 4 10 10 H 1.48496 * 109.46936 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46864 * 120.00195 * 9 7 5 12 12 H 1.48498 * 109.46944 * 239.99862 * 9 7 5 13 13 C 1.46501 * 119.99717 * 84.81972 * 4 3 2 14 14 C 1.52990 * 109.47302 * 89.99900 * 13 4 3 15 15 N 1.46500 * 109.47329 * 179.97438 * 14 13 4 16 16 C 1.34773 * 120.00260 * 179.97438 * 15 14 13 17 17 O 1.21279 * 120.00036 * 354.47952 * 16 15 14 18 18 C 1.50705 * 120.00192 * 174.47827 * 16 15 14 19 19 H 1.08998 * 109.34045 * 229.90468 * 18 16 15 20 20 O 1.42719 * 109.33386 * 349.41949 * 18 16 15 21 21 C 1.43231 * 113.14668 * 171.96082 * 20 18 16 22 22 C 1.52969 * 108.45461 * 289.31966 * 21 20 18 23 23 C 1.50741 * 109.75901 * 49.28104 * 22 21 20 24 24 C 1.38588 * 118.76615 * 163.14567 * 23 22 21 25 25 C 1.38076 * 120.27783 * 179.51964 * 24 23 22 26 26 C 1.38266 * 119.85604 * 0.02685 * 25 24 23 27 27 C 1.38050 * 119.90003 * 0.10117 * 26 25 24 28 28 C 1.37905 * 121.34414 * 342.87290 * 23 22 21 29 29 H 1.09000 * 109.47002 * 59.99601 * 1 2 3 30 30 H 1.08999 * 109.47258 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46893 * 300.00327 * 1 2 3 32 32 H 1.09003 * 109.47046 * 240.00445 * 2 1 3 33 33 H 1.08990 * 109.47330 * 119.99948 * 2 1 3 34 34 H 1.08996 * 109.47154 * 60.00257 * 3 2 1 35 35 H 1.09003 * 109.46762 * 299.99934 * 3 2 1 36 36 H 0.97006 * 119.99664 * 179.97438 * 8 7 5 37 37 H 1.08998 * 109.47198 * 329.99475 * 13 4 3 38 38 H 1.09005 * 109.46201 * 209.99493 * 13 4 3 39 39 H 1.09003 * 109.47667 * 59.99306 * 14 13 4 40 40 H 1.09004 * 109.47586 * 299.99650 * 14 13 4 41 41 H 0.97004 * 119.99670 * 359.71993 * 15 14 13 42 42 H 1.09003 * 109.62965 * 169.63902 * 21 20 18 43 43 H 1.09003 * 109.65933 * 49.01614 * 21 20 18 44 44 H 1.09000 * 109.42707 * 289.18904 * 22 21 20 45 45 H 1.09004 * 109.42513 * 169.36471 * 22 21 20 46 46 H 1.07996 * 119.86600 * 359.55075 * 24 23 22 47 47 H 1.07994 * 120.07531 * 180.02562 * 25 24 23 48 48 H 1.07999 * 120.04470 * 180.11719 * 26 25 24 49 49 H 1.07999 * 119.85155 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1902 1.5494 1.1802 6 1 5.0916 0.9750 1.3355 7 6 3.7263 2.3961 2.1776 8 7 2.8720 3.3532 1.8836 9 14 4.3146 2.1771 3.9369 10 1 5.2658 1.0387 4.0027 11 1 4.9953 3.4171 4.3892 12 1 3.1508 1.9021 4.8174 13 6 4.2370 1.3281 -1.2645 14 6 4.4918 2.7248 -1.8346 15 7 5.2242 2.6104 -3.0982 16 6 5.5605 3.7201 -3.7850 17 8 5.1714 4.8061 -3.4107 18 6 6.4201 3.6116 -5.0181 19 1 7.2442 4.3216 -4.9473 20 8 6.9470 2.2885 -5.1119 21 6 7.6271 2.0396 -6.3476 22 6 6.5876 1.9759 -7.4681 23 6 5.6718 3.1702 -7.3821 24 6 4.8972 3.4973 -8.4838 25 6 4.0403 4.5789 -8.4358 26 6 3.9551 5.3390 -7.2840 27 6 4.7283 5.0154 -6.1872 28 6 5.5901 3.9303 -6.2344 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6768 1.9564 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 2.5475 3.9447 2.5807 37 1 3.6476 0.7478 -1.9745 38 1 5.1895 0.8281 -1.0887 39 1 5.0811 3.3051 -1.1246 40 1 3.5393 3.2249 -2.0104 41 1 5.4703 1.7360 -3.4386 42 1 8.1597 1.0905 -6.2877 43 1 8.3320 2.8467 -6.5473 44 1 6.0020 1.0621 -7.3678 45 1 7.0944 1.9766 -8.4331 46 1 4.9637 2.9035 -9.3834 47 1 3.4379 4.8306 -9.2961 48 1 3.2844 6.1845 -7.2425 49 1 4.6609 5.6095 -5.2878 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713548603.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:37 Heat of formation + Delta-G solvation = -45.615786 kcal Electronic energy + Delta-G solvation = -28750.927855 eV Core-core repulsion = 24871.066557 eV Total energy + Delta-G solvation = -3879.861299 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.86481 -38.85356 -37.71866 -36.39252 -34.31280 -33.28683 -32.42020 -31.91632 -31.19329 -29.75627 -27.96664 -26.20968 -25.53302 -24.14689 -23.30956 -22.48992 -21.30821 -20.61082 -20.01820 -19.71738 -17.54208 -17.38058 -16.63417 -16.42416 -15.77471 -15.52659 -15.19734 -14.92204 -14.73859 -14.35937 -14.21896 -13.97001 -13.76848 -13.73791 -13.25516 -13.07227 -12.98214 -12.76468 -12.42234 -12.37933 -12.13873 -11.98105 -11.69093 -11.40066 -11.30099 -10.99543 -10.90167 -10.83431 -10.79419 -10.41922 -10.32523 -9.98700 -9.94483 -9.88785 -9.68823 -9.47471 -8.90095 -8.77240 -8.51695 -8.45535 -6.57699 -5.78851 -3.39353 1.09696 1.23023 2.79780 3.32186 3.36211 3.44666 3.46680 3.51949 3.65817 4.38219 4.42249 4.48764 4.56374 4.83949 4.87140 4.93200 5.06065 5.15053 5.19264 5.26312 5.33248 5.49250 5.51578 5.56500 5.60609 5.80686 5.85259 5.92544 5.94316 6.02174 6.10227 6.23035 6.26709 6.35392 6.39732 6.40479 6.54527 6.61087 6.69173 6.79305 6.84867 6.86425 6.89166 6.91601 7.11946 7.28789 7.75310 7.83020 7.92397 8.50891 8.55509 9.19405 9.79402 10.38649 11.22017 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.014494 B = 0.002773 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.349059 B =10096.094670 C =10518.072413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.141 4.141 3 C 0.150 3.850 4 N -0.578 5.578 5 C -0.265 4.265 6 H 0.062 0.938 7 C 0.015 3.985 8 N -0.884 5.884 9 Si 0.898 3.102 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.288 1.288 13 C 0.140 3.860 14 C 0.097 3.903 15 N -0.706 5.706 16 C 0.526 3.474 17 O -0.537 6.537 18 C 0.116 3.884 19 H 0.102 0.898 20 O -0.368 6.368 21 C 0.061 3.939 22 C -0.116 4.116 23 C -0.069 4.069 24 C -0.125 4.125 25 C -0.113 4.113 26 C -0.124 4.124 27 C -0.099 4.099 28 C -0.114 4.114 29 H 0.045 0.955 30 H 0.039 0.961 31 H 0.050 0.950 32 H 0.040 0.960 33 H 0.056 0.944 34 H 0.094 0.906 35 H 0.020 0.980 36 H 0.255 0.745 37 H 0.038 0.962 38 H 0.048 0.952 39 H 0.071 0.929 40 H 0.060 0.940 41 H 0.403 0.597 42 H 0.105 0.895 43 H 0.058 0.942 44 H 0.088 0.912 45 H 0.086 0.914 46 H 0.122 0.878 47 H 0.122 0.878 48 H 0.124 0.876 49 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.356 -2.475 -21.221 22.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.181 4.181 3 C 0.024 3.976 4 N -0.298 5.298 5 C -0.395 4.395 6 H 0.079 0.921 7 C -0.186 4.186 8 N -0.526 5.526 9 Si 0.727 3.273 10 H -0.200 1.200 11 H -0.216 1.216 12 H -0.214 1.214 13 C 0.012 3.988 14 C -0.028 4.028 15 N -0.356 5.356 16 C 0.310 3.690 17 O -0.415 6.415 18 C 0.055 3.945 19 H 0.119 0.881 20 O -0.286 6.286 21 C -0.016 4.016 22 C -0.153 4.153 23 C -0.069 4.069 24 C -0.143 4.143 25 C -0.131 4.131 26 C -0.142 4.142 27 C -0.117 4.117 28 C -0.115 4.115 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.112 0.888 35 H 0.038 0.962 36 H 0.065 0.935 37 H 0.057 0.943 38 H 0.067 0.933 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.238 0.762 42 H 0.123 0.877 43 H 0.077 0.923 44 H 0.106 0.894 45 H 0.104 0.896 46 H 0.140 0.860 47 H 0.140 0.860 48 H 0.142 0.858 49 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 4.977 -1.736 -20.626 21.289 hybrid contribution 0.317 -0.121 0.419 0.539 sum 5.293 -1.856 -20.207 20.971 Atomic orbital electron populations 1.21697 0.97513 0.99928 1.01159 1.22106 0.93728 1.01659 1.00584 1.20943 0.83197 0.91979 1.01509 1.43785 1.01000 1.84444 1.00600 1.19089 1.09596 1.19418 0.91389 0.92081 1.25275 0.99273 0.94536 0.99477 1.70003 1.34129 1.16454 1.32007 0.86311 0.78249 0.77659 0.85049 1.20036 1.21578 1.21418 1.21079 0.96330 0.92287 0.89060 1.22486 0.95837 1.02195 0.82317 1.46179 1.56458 1.08769 1.24190 1.19824 0.80579 0.85082 0.83552 1.90711 1.55245 1.27346 1.68219 1.21122 0.95106 0.86236 0.92030 0.88075 1.88040 1.73545 1.29456 1.37598 1.22675 0.93409 1.02315 0.83195 1.21158 0.97227 0.96790 1.00147 1.19441 0.98035 0.96294 0.93164 1.20992 0.97296 0.98081 0.97968 1.21164 0.98403 0.95425 0.98124 1.21160 0.99630 1.00178 0.93205 1.21582 0.94191 0.96339 0.99608 1.19739 0.99706 0.97459 0.94584 0.93618 0.94148 0.93065 0.94129 0.92483 0.88836 0.96161 0.93506 0.94341 0.93342 0.91045 0.92184 0.76243 0.87689 0.92322 0.89382 0.89592 0.85984 0.85985 0.85756 0.83692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.91 37.16 0.37 -2.06 16 2 C -0.14 -2.79 6.26 -26.73 -0.17 -2.96 16 3 C 0.15 3.50 5.22 -4.04 -0.02 3.48 16 4 N -0.58 -14.14 2.42 -173.24 -0.42 -14.56 16 5 C -0.27 -7.13 9.46 -15.06 -0.14 -7.27 16 6 H 0.06 1.64 7.90 -52.48 -0.41 1.23 16 7 C 0.02 0.42 4.96 -17.43 -0.09 0.34 16 8 N -0.88 -25.40 11.46 55.49 0.64 -24.77 16 9 Si 0.90 21.49 29.59 -169.99 -5.03 16.46 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 C 0.14 2.88 5.80 -4.05 -0.02 2.86 16 14 C 0.10 2.02 6.00 -4.05 -0.02 1.99 16 15 N -0.71 -12.07 5.47 -60.30 -0.33 -12.40 16 16 C 0.53 9.08 6.82 -10.98 -0.07 9.00 16 17 O -0.54 -11.08 14.88 5.56 0.08 -11.00 16 18 C 0.12 1.56 3.22 -29.05 -0.09 1.46 16 19 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 20 O -0.37 -4.33 9.22 -35.23 -0.32 -4.66 16 21 C 0.06 0.49 6.85 37.14 0.25 0.75 16 22 C -0.12 -0.92 6.00 -27.88 -0.17 -1.08 16 23 C -0.07 -0.74 5.78 -104.59 -0.60 -1.35 16 24 C -0.13 -1.21 9.67 -39.51 -0.38 -1.59 16 25 C -0.11 -1.12 10.05 -39.63 -0.40 -1.52 16 26 C -0.12 -1.42 10.05 -39.64 -0.40 -1.82 16 27 C -0.10 -1.35 9.07 -39.50 -0.36 -1.71 16 28 C -0.11 -1.47 5.46 -104.61 -0.57 -2.05 16 29 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.09 2.48 5.58 -51.93 -0.29 2.19 16 35 H 0.02 0.46 8.11 -51.93 -0.42 0.04 16 36 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 37 H 0.04 0.72 8.07 -51.93 -0.42 0.30 16 38 H 0.05 0.96 8.04 -51.93 -0.42 0.55 16 39 H 0.07 1.72 8.14 -51.93 -0.42 1.30 16 40 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 41 H 0.40 5.96 7.37 -40.82 -0.30 5.66 16 42 H 0.11 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.43 8.07 -51.93 -0.42 0.01 16 44 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 47 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 48 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 49 H 0.15 2.23 5.88 -52.49 -0.31 1.92 16 LS Contribution 396.03 15.07 5.97 5.97 Total: -1.00 -31.30 396.03 -10.35 -41.65 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -8.04 Total: 6.83 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: -2.89 Total: -3.53 kcal Atomic # 7 Polarization: -51.62 SS G_CDS: -0.11 Total: -51.73 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: -0.24 Total: -15.65 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.30 -10.35 -41.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713548603.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.963 kcal (2) G-P(sol) polarization free energy of solvation -31.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds