Wall clock time and date at job start Tue Mar 31 2020 16:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.47205 * 2 1 4 4 N 1.46503 * 109.46906 * 180.02562 * 3 2 1 5 5 C 1.36934 * 119.99738 * 264.81484 * 4 3 2 6 6 H 1.08004 * 119.99925 * 141.20280 * 5 4 3 7 7 C 1.38811 * 120.00291 * 321.20103 * 5 4 3 8 8 N 1.31621 * 119.99719 * 341.33724 * 7 5 4 9 9 Si 1.86799 * 120.00072 * 161.33856 * 7 5 4 10 10 H 1.48496 * 109.46936 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46864 * 120.00195 * 9 7 5 12 12 H 1.48498 * 109.46944 * 239.99862 * 9 7 5 13 13 C 1.46501 * 119.99717 * 84.81972 * 4 3 2 14 14 C 1.52990 * 109.47302 * 89.99900 * 13 4 3 15 15 N 1.46500 * 109.47329 * 179.97438 * 14 13 4 16 16 C 1.34773 * 120.00260 * 179.97438 * 15 14 13 17 17 O 1.21279 * 120.00036 * 354.47952 * 16 15 14 18 18 C 1.50705 * 120.00192 * 174.47827 * 16 15 14 19 19 H 1.08998 * 109.34045 * 229.90468 * 18 16 15 20 20 O 1.42719 * 109.33386 * 349.41949 * 18 16 15 21 21 C 1.43231 * 113.14668 * 171.96082 * 20 18 16 22 22 C 1.52969 * 108.45461 * 289.31966 * 21 20 18 23 23 C 1.50741 * 109.75901 * 49.28104 * 22 21 20 24 24 C 1.38588 * 118.76615 * 163.14567 * 23 22 21 25 25 C 1.38076 * 120.27783 * 179.51964 * 24 23 22 26 26 C 1.38266 * 119.85604 * 0.02685 * 25 24 23 27 27 C 1.38050 * 119.90003 * 0.10117 * 26 25 24 28 28 C 1.37905 * 121.34414 * 342.87290 * 23 22 21 29 29 H 1.09000 * 109.47002 * 59.99601 * 1 2 3 30 30 H 1.08999 * 109.47258 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46893 * 300.00327 * 1 2 3 32 32 H 1.09003 * 109.47046 * 240.00445 * 2 1 3 33 33 H 1.08990 * 109.47330 * 119.99948 * 2 1 3 34 34 H 1.08996 * 109.47154 * 60.00257 * 3 2 1 35 35 H 1.09003 * 109.46762 * 299.99934 * 3 2 1 36 36 H 0.97006 * 119.99664 * 179.97438 * 8 7 5 37 37 H 1.08998 * 109.47198 * 329.99475 * 13 4 3 38 38 H 1.09005 * 109.46201 * 209.99493 * 13 4 3 39 39 H 1.09003 * 109.47667 * 59.99306 * 14 13 4 40 40 H 1.09004 * 109.47586 * 299.99650 * 14 13 4 41 41 H 0.97004 * 119.99670 * 359.71993 * 15 14 13 42 42 H 1.09003 * 109.62965 * 169.63902 * 21 20 18 43 43 H 1.09003 * 109.65933 * 49.01614 * 21 20 18 44 44 H 1.09000 * 109.42707 * 289.18904 * 22 21 20 45 45 H 1.09004 * 109.42513 * 169.36471 * 22 21 20 46 46 H 1.07996 * 119.86600 * 359.55075 * 24 23 22 47 47 H 1.07994 * 120.07531 * 180.02562 * 25 24 23 48 48 H 1.07999 * 120.04470 * 180.11719 * 26 25 24 49 49 H 1.07999 * 119.85155 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1902 1.5494 1.1802 6 1 5.0916 0.9750 1.3355 7 6 3.7263 2.3961 2.1776 8 7 2.8720 3.3532 1.8836 9 14 4.3146 2.1771 3.9369 10 1 5.2658 1.0387 4.0027 11 1 4.9953 3.4171 4.3892 12 1 3.1508 1.9021 4.8174 13 6 4.2370 1.3281 -1.2645 14 6 4.4918 2.7248 -1.8346 15 7 5.2242 2.6104 -3.0982 16 6 5.5605 3.7201 -3.7850 17 8 5.1714 4.8061 -3.4107 18 6 6.4201 3.6116 -5.0181 19 1 7.2442 4.3216 -4.9473 20 8 6.9470 2.2885 -5.1119 21 6 7.6271 2.0396 -6.3476 22 6 6.5876 1.9759 -7.4681 23 6 5.6718 3.1702 -7.3821 24 6 4.8972 3.4973 -8.4838 25 6 4.0403 4.5789 -8.4358 26 6 3.9551 5.3390 -7.2840 27 6 4.7283 5.0154 -6.1872 28 6 5.5901 3.9303 -6.2344 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6768 1.9564 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 2.5475 3.9447 2.5807 37 1 3.6476 0.7478 -1.9745 38 1 5.1895 0.8281 -1.0887 39 1 5.0811 3.3051 -1.1246 40 1 3.5393 3.2249 -2.0104 41 1 5.4703 1.7360 -3.4386 42 1 8.1597 1.0905 -6.2877 43 1 8.3320 2.8467 -6.5473 44 1 6.0020 1.0621 -7.3678 45 1 7.0944 1.9766 -8.4331 46 1 4.9637 2.9035 -9.3834 47 1 3.4379 4.8306 -9.2961 48 1 3.2844 6.1845 -7.2425 49 1 4.6609 5.6095 -5.2878 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713548603.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:35 Heat of formation + Delta-G solvation = -64.077768 kcal Electronic energy + Delta-G solvation = -28751.728427 eV Core-core repulsion = 24871.066557 eV Total energy + Delta-G solvation = -3880.661871 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.87244 -40.13488 -38.58845 -38.21598 -35.92921 -34.20071 -34.08656 -33.06366 -32.76442 -30.67268 -29.50706 -27.39615 -27.30068 -25.16341 -24.70393 -23.49911 -22.95068 -21.80209 -21.52894 -20.98501 -18.86543 -18.48675 -18.29254 -17.55096 -16.87081 -16.65577 -16.52816 -16.40874 -16.09004 -15.79544 -15.60579 -15.33035 -15.04536 -14.80310 -14.61164 -14.41273 -14.25687 -14.00339 -13.61499 -13.55386 -13.43601 -13.20028 -12.91443 -12.81886 -12.75566 -12.58813 -12.48867 -12.23617 -12.18509 -12.06743 -11.76550 -11.66749 -11.61186 -11.28370 -11.07096 -10.78687 -10.55494 -10.09753 -9.78331 -9.61589 -8.59491 -7.85124 -5.50112 0.23809 0.38348 1.42470 1.44448 1.47122 1.57465 2.10317 2.46251 2.51996 2.77154 3.24790 3.45693 3.59804 3.73431 3.88892 3.90369 4.06408 4.16497 4.22718 4.24290 4.32949 4.34355 4.34964 4.53097 4.54408 4.59352 4.66108 4.71193 4.72643 4.86137 4.87938 4.96297 5.03067 5.07474 5.12165 5.15569 5.17609 5.27038 5.36844 5.44095 5.45757 5.53666 5.55890 5.57956 5.67613 5.86207 5.87268 6.02096 6.46252 6.53337 7.13399 7.16985 7.81563 8.35267 9.12538 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.014494 B = 0.002773 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.349059 B =10096.094670 C =10518.072413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.151 3.849 4 N -0.595 5.595 5 C -0.271 4.271 6 H 0.061 0.939 7 C -0.035 4.035 8 N -0.918 5.918 9 Si 0.959 3.041 10 H -0.263 1.263 11 H -0.294 1.294 12 H -0.287 1.287 13 C 0.145 3.855 14 C 0.120 3.880 15 N -0.696 5.696 16 C 0.520 3.480 17 O -0.578 6.578 18 C 0.132 3.868 19 H 0.107 0.893 20 O -0.379 6.379 21 C 0.052 3.948 22 C -0.112 4.112 23 C -0.072 4.072 24 C -0.123 4.123 25 C -0.110 4.110 26 C -0.136 4.136 27 C -0.128 4.128 28 C -0.135 4.135 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.041 0.959 32 H 0.055 0.945 33 H 0.042 0.958 34 H 0.060 0.940 35 H 0.015 0.985 36 H 0.251 0.749 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.030 0.970 40 H 0.030 0.970 41 H 0.417 0.583 42 H 0.133 0.867 43 H 0.067 0.933 44 H 0.095 0.905 45 H 0.117 0.883 46 H 0.157 0.843 47 H 0.152 0.848 48 H 0.133 0.867 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.132 -5.160 -24.113 25.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.169 4.169 3 C 0.025 3.975 4 N -0.315 5.315 5 C -0.401 4.401 6 H 0.079 0.921 7 C -0.233 4.233 8 N -0.562 5.562 9 Si 0.787 3.213 10 H -0.188 1.188 11 H -0.221 1.221 12 H -0.214 1.214 13 C 0.018 3.982 14 C -0.006 4.006 15 N -0.347 5.347 16 C 0.306 3.694 17 O -0.459 6.459 18 C 0.071 3.929 19 H 0.124 0.876 20 O -0.299 6.299 21 C -0.024 4.024 22 C -0.149 4.149 23 C -0.072 4.072 24 C -0.140 4.140 25 C -0.128 4.128 26 C -0.154 4.154 27 C -0.146 4.146 28 C -0.135 4.135 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.078 0.922 35 H 0.033 0.967 36 H 0.060 0.940 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.049 0.951 40 H 0.048 0.952 41 H 0.255 0.745 42 H 0.151 0.849 43 H 0.085 0.915 44 H 0.113 0.887 45 H 0.135 0.865 46 H 0.175 0.825 47 H 0.170 0.830 48 H 0.151 0.849 49 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 5.777 -4.467 -23.556 24.662 hybrid contribution 0.098 0.719 1.173 1.380 sum 5.875 -3.748 -22.383 23.442 Atomic orbital electron populations 1.21644 0.95082 1.01765 1.01204 1.21920 0.95814 0.98574 1.00547 1.20867 0.82917 0.94120 0.99584 1.44017 1.01589 1.84599 1.01325 1.19347 1.09457 1.18759 0.92547 0.92092 1.25981 0.99854 0.94446 1.03002 1.70152 1.35768 1.17505 1.32739 0.85348 0.77794 0.77490 0.80644 1.18758 1.22128 1.21377 1.21130 0.96925 0.91999 0.88103 1.21918 0.93941 1.01579 0.83193 1.45941 1.56111 1.09786 1.22899 1.20601 0.80231 0.84156 0.84414 1.90689 1.56720 1.28915 1.69617 1.20754 0.94547 0.87521 0.90077 0.87610 1.88008 1.73928 1.28021 1.39901 1.23040 0.93590 1.03997 0.81760 1.21247 0.96747 0.95441 1.01478 1.19836 0.98381 0.96585 0.92406 1.21438 0.96058 0.97855 0.98669 1.21544 0.98294 0.94861 0.98101 1.21352 0.99619 1.01061 0.93403 1.21482 0.96315 0.97316 0.99530 1.19756 1.00297 0.98164 0.95319 0.92687 0.91341 0.94000 0.92589 0.93918 0.92208 0.96682 0.94016 0.91708 0.92179 0.95128 0.95194 0.74499 0.84943 0.91478 0.88669 0.86483 0.82545 0.83030 0.84908 0.86858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.44 9.91 71.98 0.71 -3.73 16 2 C -0.13 -4.99 6.26 30.60 0.19 -4.79 16 3 C 0.15 7.20 5.22 86.38 0.45 7.65 16 4 N -0.59 -29.62 2.42 -701.99 -1.70 -31.32 16 5 C -0.27 -14.82 9.46 84.03 0.80 -14.03 16 6 H 0.06 3.29 7.90 -2.91 -0.02 3.27 16 7 C -0.04 -1.97 4.96 84.86 0.42 -1.55 16 8 N -0.92 -54.96 11.46 21.65 0.25 -54.71 16 9 Si 0.96 45.12 29.59 68.60 2.03 47.15 16 10 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 11 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 12 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 13 C 0.15 6.00 5.80 86.38 0.50 6.50 16 14 C 0.12 5.26 6.00 86.38 0.52 5.78 16 15 N -0.70 -24.43 5.47 -463.07 -2.53 -26.96 16 16 C 0.52 18.83 6.82 87.66 0.60 19.43 16 17 O -0.58 -25.83 14.88 -3.03 -0.05 -25.87 16 18 C 0.13 3.56 3.22 29.09 0.09 3.66 16 19 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 20 O -0.38 -8.32 9.22 -148.98 -1.37 -9.69 16 21 C 0.05 0.67 6.85 71.97 0.49 1.17 16 22 C -0.11 -1.32 6.00 29.85 0.18 -1.14 16 23 C -0.07 -1.36 5.78 -19.85 -0.11 -1.48 16 24 C -0.12 -1.94 9.67 22.31 0.22 -1.72 16 25 C -0.11 -1.91 10.05 22.24 0.22 -1.68 16 26 C -0.14 -3.11 10.05 22.23 0.22 -2.89 16 27 C -0.13 -3.67 9.07 22.32 0.20 -3.47 16 28 C -0.13 -3.45 5.46 -19.86 -0.11 -3.55 16 29 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.06 3.30 5.58 -2.39 -0.01 3.29 16 35 H 0.01 0.71 8.11 -2.39 -0.02 0.69 16 36 H 0.25 14.54 8.31 -92.70 -0.77 13.77 16 37 H 0.06 2.34 8.07 -2.39 -0.02 2.32 16 38 H 0.06 2.35 8.04 -2.38 -0.02 2.33 16 39 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.03 1.47 8.14 -2.38 -0.02 1.45 16 41 H 0.42 12.10 7.37 -92.71 -0.68 11.42 16 42 H 0.13 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.07 0.78 8.07 -2.39 -0.02 0.76 16 44 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.16 1.39 8.06 -2.91 -0.02 1.37 16 47 H 0.15 1.68 8.06 -2.91 -0.02 1.65 16 48 H 0.13 2.62 8.06 -2.91 -0.02 2.60 16 49 H 0.11 3.90 5.88 -2.91 -0.02 3.88 16 Total: -1.00 -72.52 396.03 2.48 -70.04 By element: Atomic # 1 Polarization: 26.98 SS G_CDS: 0.25 Total: 27.23 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: 5.60 Total: 4.14 kcal Atomic # 7 Polarization: -109.01 SS G_CDS: -3.98 Total: -113.00 kcal Atomic # 8 Polarization: -34.15 SS G_CDS: -1.42 Total: -35.57 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -72.52 2.48 -70.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713548603.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.961 kcal (2) G-P(sol) polarization free energy of solvation -72.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds