Wall clock time and date at job start Tue Mar 31 2020 16:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46929 * 2 1 4 4 N 1.46502 * 109.47239 * 180.02562 * 3 2 1 5 5 C 1.36930 * 119.99908 * 264.49408 * 4 3 2 6 6 H 1.08002 * 119.99844 * 186.47339 * 5 4 3 7 7 C 1.38812 * 120.00138 * 6.46836 * 5 4 3 8 8 N 1.31619 * 119.99900 * 32.33235 * 7 5 4 9 9 Si 1.86801 * 120.00112 * 212.32802 * 7 5 4 10 10 H 1.48504 * 109.46829 * 94.99992 * 9 7 5 11 11 H 1.48502 * 109.47322 * 214.99440 * 9 7 5 12 12 H 1.48495 * 109.47180 * 335.00228 * 9 7 5 13 13 C 1.46503 * 119.99944 * 84.48662 * 4 3 2 14 14 C 1.52998 * 109.47365 * 270.00038 * 13 4 3 15 15 N 1.46503 * 109.47365 * 179.97438 * 14 13 4 16 16 C 1.34771 * 120.00226 * 179.97438 * 15 14 13 17 17 O 1.21286 * 119.99665 * 4.97480 * 16 15 14 18 18 C 1.50697 * 120.00182 * 184.96724 * 16 15 14 19 19 H 1.09006 * 109.20311 * 128.71321 * 18 16 15 20 20 O 1.42728 * 109.33598 * 9.12087 * 18 16 15 21 21 C 1.43217 * 113.12574 * 188.03402 * 20 18 16 22 22 C 1.52974 * 108.46551 * 70.71832 * 21 20 18 23 23 C 1.50743 * 109.71028 * 310.81964 * 22 21 20 24 24 C 1.38721 * 118.67703 * 196.86072 * 23 22 21 25 25 C 1.38069 * 120.24683 * 180.13710 * 24 23 22 26 26 C 1.38261 * 119.86181 * 0.02562 * 25 24 23 27 27 C 1.38056 * 119.89516 * 359.91363 * 26 25 24 28 28 C 1.37786 * 121.43605 * 16.85976 * 23 22 21 29 29 H 1.09004 * 109.47038 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46999 * 299.99866 * 1 2 3 31 31 H 1.08998 * 109.47208 * 60.00042 * 1 2 3 32 32 H 1.09000 * 109.46999 * 240.00134 * 2 1 3 33 33 H 1.08995 * 109.47637 * 120.00256 * 2 1 3 34 34 H 1.09000 * 109.47171 * 60.00239 * 3 2 1 35 35 H 1.09007 * 109.47275 * 300.00112 * 3 2 1 36 36 H 0.97002 * 120.00023 * 180.02562 * 8 7 5 37 37 H 1.09005 * 109.46438 * 150.00544 * 13 4 3 38 38 H 1.08998 * 109.47119 * 30.00494 * 13 4 3 39 39 H 1.09009 * 109.46944 * 60.00056 * 14 13 4 40 40 H 1.08998 * 109.47374 * 300.00300 * 14 13 4 41 41 H 0.97001 * 119.99292 * 0.02562 * 15 14 13 42 42 H 1.09002 * 109.64023 * 311.02547 * 21 20 18 43 43 H 1.08999 * 109.63325 * 190.40740 * 21 20 18 44 44 H 1.09007 * 109.42178 * 70.87727 * 22 21 20 45 45 H 1.08996 * 109.42422 * 190.75859 * 22 21 20 46 46 H 1.08001 * 119.88834 * 0.14306 * 24 23 22 47 47 H 1.07998 * 120.06782 * 180.02562 * 25 24 23 48 48 H 1.07994 * 120.05152 * 179.97438 * 26 25 24 49 49 H 1.07999 * 119.84444 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1901 1.5562 1.1795 6 1 5.2649 1.6615 1.1719 7 6 3.5032 1.5362 2.3856 8 7 2.4054 0.8201 2.5059 9 14 4.1369 2.5254 3.8379 10 1 3.4520 3.8425 3.8762 11 1 3.8618 1.7878 5.0971 12 1 5.6003 2.7324 3.6950 13 6 4.2369 1.3209 -1.2638 14 6 4.4919 -0.1573 -1.5653 15 7 5.2234 -0.2790 -2.8288 16 6 5.5605 -1.4967 -3.2977 17 8 5.1812 -2.4945 -2.7220 18 6 6.4087 -1.6184 -4.5373 19 1 7.2505 -2.2798 -4.3322 20 8 6.8990 -0.3288 -4.9031 21 6 7.5638 -0.3188 -6.1715 22 6 6.5158 -0.5088 -7.2695 23 6 5.6314 -1.6816 -6.9307 24 6 4.8578 -2.2441 -7.9354 25 6 4.0341 -3.3175 -7.6604 26 6 3.9798 -3.8331 -6.3787 27 6 4.7506 -3.2741 -5.3790 28 6 5.5798 -2.1976 -5.6541 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 1.9252 0.8064 3.3485 37 1 5.1894 1.8449 -1.1836 38 1 3.6475 1.7595 -2.0690 39 1 3.5394 -0.6813 -1.6453 40 1 5.0813 -0.5959 -0.7601 41 1 5.4656 0.5170 -3.3275 42 1 8.2882 -1.1323 -6.2119 43 1 8.0718 0.6354 -6.3112 44 1 5.9077 0.3924 -7.3500 45 1 7.0160 -0.6946 -8.2198 46 1 4.9000 -1.8412 -8.9365 47 1 3.4334 -3.7535 -8.4449 48 1 3.3363 -4.6723 -6.1601 49 1 4.7079 -3.6777 -4.3782 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713548604.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:44 Heat of formation + Delta-G solvation = -32.813195 kcal Electronic energy + Delta-G solvation = -28985.231658 eV Core-core repulsion = 25105.925521 eV Total energy + Delta-G solvation = -3879.306137 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -40.91089 -38.92364 -37.75740 -36.55002 -34.35271 -33.31301 -31.96471 -31.92783 -31.32754 -29.78965 -28.02346 -26.23942 -25.47845 -24.17813 -23.38959 -22.54027 -20.78867 -20.69920 -20.18402 -19.76711 -17.59403 -17.41440 -16.78451 -16.44996 -15.80524 -15.56440 -15.27825 -14.96939 -14.76396 -14.38353 -14.22232 -13.81165 -13.73293 -13.63512 -13.25725 -12.98761 -12.90054 -12.75422 -12.49031 -12.28575 -12.16222 -12.01050 -11.62637 -11.43289 -11.32470 -11.01747 -10.94964 -10.81645 -10.60959 -10.37770 -10.02146 -9.96635 -9.90445 -9.83671 -9.65286 -9.17533 -8.92493 -8.80694 -8.54612 -8.29680 -6.95693 -5.81522 -3.04382 1.07249 1.20306 2.73216 3.27555 3.41360 3.44288 3.51422 3.52492 3.62029 4.35545 4.38387 4.53276 4.53951 4.81455 4.83640 4.90477 5.02009 5.11233 5.16418 5.23513 5.28621 5.46472 5.50181 5.55696 5.59136 5.78144 5.87181 5.91607 5.95088 6.20337 6.24202 6.24900 6.31729 6.32715 6.37271 6.54428 6.64587 6.68266 6.70277 6.73291 6.81953 6.90743 7.02558 7.17621 7.26792 7.67604 7.77781 7.84161 8.12342 8.31239 8.45612 9.21809 9.85593 10.30760 11.23491 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.016530 B = 0.002825 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.453306 B = 9909.661529 C =10823.209920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.135 4.135 3 C 0.173 3.827 4 N -0.590 5.590 5 C -0.262 4.262 6 H 0.076 0.924 7 C 0.007 3.993 8 N -0.881 5.881 9 Si 0.886 3.114 10 H -0.289 1.289 11 H -0.295 1.295 12 H -0.281 1.281 13 C 0.144 3.856 14 C 0.087 3.913 15 N -0.706 5.706 16 C 0.527 3.473 17 O -0.537 6.537 18 C 0.116 3.884 19 H 0.102 0.898 20 O -0.368 6.368 21 C 0.061 3.939 22 C -0.116 4.116 23 C -0.069 4.069 24 C -0.126 4.126 25 C -0.113 4.113 26 C -0.124 4.124 27 C -0.099 4.099 28 C -0.115 4.115 29 H 0.034 0.966 30 H 0.050 0.950 31 H 0.030 0.970 32 H 0.023 0.977 33 H 0.102 0.898 34 H 0.081 0.919 35 H 0.006 0.994 36 H 0.253 0.747 37 H 0.051 0.949 38 H 0.043 0.957 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.404 0.596 42 H 0.059 0.941 43 H 0.105 0.895 44 H 0.088 0.912 45 H 0.086 0.914 46 H 0.122 0.878 47 H 0.122 0.878 48 H 0.124 0.876 49 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.371 -4.162 -22.206 23.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.174 4.174 3 C 0.047 3.953 4 N -0.310 5.310 5 C -0.390 4.390 6 H 0.094 0.906 7 C -0.192 4.192 8 N -0.525 5.525 9 Si 0.716 3.284 10 H -0.217 1.217 11 H -0.222 1.222 12 H -0.206 1.206 13 C 0.016 3.984 14 C -0.038 4.038 15 N -0.356 5.356 16 C 0.310 3.690 17 O -0.416 6.416 18 C 0.055 3.945 19 H 0.119 0.881 20 O -0.287 6.287 21 C -0.016 4.016 22 C -0.153 4.153 23 C -0.069 4.069 24 C -0.144 4.144 25 C -0.131 4.131 26 C -0.142 4.142 27 C -0.117 4.117 28 C -0.115 4.115 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.049 0.951 32 H 0.042 0.958 33 H 0.120 0.880 34 H 0.099 0.901 35 H 0.025 0.975 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.239 0.761 42 H 0.077 0.923 43 H 0.123 0.877 44 H 0.106 0.894 45 H 0.104 0.896 46 H 0.140 0.860 47 H 0.140 0.860 48 H 0.142 0.858 49 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 5.971 -4.668 -21.465 22.764 hybrid contribution 0.327 0.371 0.304 0.580 sum 6.298 -4.297 -21.161 22.493 Atomic orbital electron populations 1.21633 0.98579 0.99385 0.99950 1.22248 0.92900 1.00516 1.01775 1.20827 0.81765 0.94497 0.98176 1.44277 1.01754 1.83679 1.01331 1.19238 0.92013 1.44332 0.83447 0.90620 1.24652 0.97831 0.99734 0.97002 1.70227 1.20349 1.36872 1.25024 0.86500 0.78450 0.81099 0.82372 1.21655 1.22158 1.20584 1.20938 0.96467 0.91759 0.89285 1.22777 0.96055 1.01812 0.83178 1.46149 1.56560 1.07946 1.24933 1.19843 0.80417 0.84354 0.84359 1.90703 1.55332 1.36726 1.58833 1.21095 0.95524 0.86262 0.91593 0.88055 1.88032 1.75195 1.28302 1.37132 1.22677 0.93535 1.03117 0.82256 1.21163 0.97463 0.96973 0.99739 1.19445 0.98067 0.96784 0.92607 1.21032 0.97476 0.97149 0.98697 1.21167 0.98510 0.96483 0.96910 1.21161 0.99605 1.00428 0.93001 1.21590 0.94301 0.94860 1.00963 1.19686 0.99965 0.98058 0.93830 0.94729 0.93085 0.95066 0.95827 0.88014 0.90083 0.97547 0.93712 0.93030 0.93882 0.91522 0.91416 0.76109 0.92308 0.87659 0.89359 0.89556 0.85956 0.85973 0.85754 0.83645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 9.91 37.16 0.37 -2.32 16 2 C -0.14 -3.08 5.66 -26.73 -0.15 -3.23 16 3 C 0.17 4.07 4.93 -4.04 -0.02 4.05 16 4 N -0.59 -14.24 2.54 -173.23 -0.44 -14.68 16 5 C -0.26 -6.97 9.64 -15.06 -0.15 -7.11 16 6 H 0.08 2.00 7.99 -52.49 -0.42 1.58 16 7 C 0.01 0.18 4.71 -17.43 -0.08 0.09 16 8 N -0.88 -24.25 8.98 55.49 0.50 -23.75 16 9 Si 0.89 21.31 29.66 -169.99 -5.04 16.27 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.14 2.86 5.82 -4.04 -0.02 2.83 16 14 C 0.09 1.71 5.89 -4.04 -0.02 1.69 16 15 N -0.71 -11.47 5.47 -60.29 -0.33 -11.80 16 16 C 0.53 8.67 6.86 -10.99 -0.08 8.60 16 17 O -0.54 -10.58 14.80 5.55 0.08 -10.50 16 18 C 0.12 1.49 3.22 -29.06 -0.09 1.40 16 19 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 20 O -0.37 -4.15 9.20 -35.23 -0.32 -4.47 16 21 C 0.06 0.47 6.85 37.14 0.25 0.73 16 22 C -0.12 -0.88 6.01 -27.88 -0.17 -1.05 16 23 C -0.07 -0.72 5.78 -104.59 -0.60 -1.32 16 24 C -0.13 -1.18 9.68 -39.46 -0.38 -1.56 16 25 C -0.11 -1.09 10.05 -39.63 -0.40 -1.49 16 26 C -0.12 -1.38 10.05 -39.64 -0.40 -1.78 16 27 C -0.10 -1.31 9.06 -39.50 -0.36 -1.67 16 28 C -0.11 -1.43 5.45 -104.66 -0.57 -2.01 16 29 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.02 0.53 5.99 -51.93 -0.31 0.21 16 33 H 0.10 2.69 6.24 -51.93 -0.32 2.36 16 34 H 0.08 2.12 6.01 -51.93 -0.31 1.81 16 35 H 0.01 0.14 7.97 -51.93 -0.41 -0.28 16 36 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 37 H 0.05 0.98 8.03 -51.93 -0.42 0.57 16 38 H 0.04 0.78 7.95 -51.93 -0.41 0.37 16 39 H 0.07 1.44 5.94 -51.92 -0.31 1.13 16 40 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 41 H 0.40 5.69 7.35 -40.82 -0.30 5.39 16 42 H 0.06 0.41 8.07 -51.93 -0.42 -0.01 16 43 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 47 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 48 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 49 H 0.15 2.16 5.85 -52.49 -0.31 1.86 16 LS Contribution 386.54 15.07 5.83 5.83 Total: -1.00 -30.32 386.54 -10.33 -40.65 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -7.73 Total: 6.61 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -2.87 Total: -4.16 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: -0.27 Total: -50.23 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -0.24 Total: -14.97 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.04 Total: 16.27 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.32 -10.33 -40.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713548604.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.841 kcal (2) G-P(sol) polarization free energy of solvation -30.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds