Wall clock time and date at job start Tue Mar 31 2020 16:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46929 * 2 1 4 4 N 1.46502 * 109.47239 * 180.02562 * 3 2 1 5 5 C 1.36930 * 119.99908 * 264.49408 * 4 3 2 6 6 H 1.08002 * 119.99844 * 186.47339 * 5 4 3 7 7 C 1.38812 * 120.00138 * 6.46836 * 5 4 3 8 8 N 1.31619 * 119.99900 * 32.33235 * 7 5 4 9 9 Si 1.86801 * 120.00112 * 212.32802 * 7 5 4 10 10 H 1.48504 * 109.46829 * 94.99992 * 9 7 5 11 11 H 1.48502 * 109.47322 * 214.99440 * 9 7 5 12 12 H 1.48495 * 109.47180 * 335.00228 * 9 7 5 13 13 C 1.46503 * 119.99944 * 84.48662 * 4 3 2 14 14 C 1.52998 * 109.47365 * 270.00038 * 13 4 3 15 15 N 1.46503 * 109.47365 * 179.97438 * 14 13 4 16 16 C 1.34771 * 120.00226 * 179.97438 * 15 14 13 17 17 O 1.21286 * 119.99665 * 4.97480 * 16 15 14 18 18 C 1.50697 * 120.00182 * 184.96724 * 16 15 14 19 19 H 1.09006 * 109.20311 * 128.71321 * 18 16 15 20 20 O 1.42728 * 109.33598 * 9.12087 * 18 16 15 21 21 C 1.43217 * 113.12574 * 188.03402 * 20 18 16 22 22 C 1.52974 * 108.46551 * 70.71832 * 21 20 18 23 23 C 1.50743 * 109.71028 * 310.81964 * 22 21 20 24 24 C 1.38721 * 118.67703 * 196.86072 * 23 22 21 25 25 C 1.38069 * 120.24683 * 180.13710 * 24 23 22 26 26 C 1.38261 * 119.86181 * 0.02562 * 25 24 23 27 27 C 1.38056 * 119.89516 * 359.91363 * 26 25 24 28 28 C 1.37786 * 121.43605 * 16.85976 * 23 22 21 29 29 H 1.09004 * 109.47038 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46999 * 299.99866 * 1 2 3 31 31 H 1.08998 * 109.47208 * 60.00042 * 1 2 3 32 32 H 1.09000 * 109.46999 * 240.00134 * 2 1 3 33 33 H 1.08995 * 109.47637 * 120.00256 * 2 1 3 34 34 H 1.09000 * 109.47171 * 60.00239 * 3 2 1 35 35 H 1.09007 * 109.47275 * 300.00112 * 3 2 1 36 36 H 0.97002 * 120.00023 * 180.02562 * 8 7 5 37 37 H 1.09005 * 109.46438 * 150.00544 * 13 4 3 38 38 H 1.08998 * 109.47119 * 30.00494 * 13 4 3 39 39 H 1.09009 * 109.46944 * 60.00056 * 14 13 4 40 40 H 1.08998 * 109.47374 * 300.00300 * 14 13 4 41 41 H 0.97001 * 119.99292 * 0.02562 * 15 14 13 42 42 H 1.09002 * 109.64023 * 311.02547 * 21 20 18 43 43 H 1.08999 * 109.63325 * 190.40740 * 21 20 18 44 44 H 1.09007 * 109.42178 * 70.87727 * 22 21 20 45 45 H 1.08996 * 109.42422 * 190.75859 * 22 21 20 46 46 H 1.08001 * 119.88834 * 0.14306 * 24 23 22 47 47 H 1.07998 * 120.06782 * 180.02562 * 25 24 23 48 48 H 1.07994 * 120.05152 * 179.97438 * 26 25 24 49 49 H 1.07999 * 119.84444 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1901 1.5562 1.1795 6 1 5.2649 1.6615 1.1719 7 6 3.5032 1.5362 2.3856 8 7 2.4054 0.8201 2.5059 9 14 4.1369 2.5254 3.8379 10 1 3.4520 3.8425 3.8762 11 1 3.8618 1.7878 5.0971 12 1 5.6003 2.7324 3.6950 13 6 4.2369 1.3209 -1.2638 14 6 4.4919 -0.1573 -1.5653 15 7 5.2234 -0.2790 -2.8288 16 6 5.5605 -1.4967 -3.2977 17 8 5.1812 -2.4945 -2.7220 18 6 6.4087 -1.6184 -4.5373 19 1 7.2505 -2.2798 -4.3322 20 8 6.8990 -0.3288 -4.9031 21 6 7.5638 -0.3188 -6.1715 22 6 6.5158 -0.5088 -7.2695 23 6 5.6314 -1.6816 -6.9307 24 6 4.8578 -2.2441 -7.9354 25 6 4.0341 -3.3175 -7.6604 26 6 3.9798 -3.8331 -6.3787 27 6 4.7506 -3.2741 -5.3790 28 6 5.5798 -2.1976 -5.6541 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 1.9252 0.8064 3.3485 37 1 5.1894 1.8449 -1.1836 38 1 3.6475 1.7595 -2.0690 39 1 3.5394 -0.6813 -1.6453 40 1 5.0813 -0.5959 -0.7601 41 1 5.4656 0.5170 -3.3275 42 1 8.2882 -1.1323 -6.2119 43 1 8.0718 0.6354 -6.3112 44 1 5.9077 0.3924 -7.3500 45 1 7.0160 -0.6946 -8.2198 46 1 4.9000 -1.8412 -8.9365 47 1 3.4334 -3.7535 -8.4449 48 1 3.3363 -4.6723 -6.1601 49 1 4.7079 -3.6777 -4.3782 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713548604.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:40 Heat of formation + Delta-G solvation = -50.239929 kcal Electronic energy + Delta-G solvation = -28985.987338 eV Core-core repulsion = 25105.925521 eV Total energy + Delta-G solvation = -3880.061817 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 2.72 seconds Orbital eigenvalues (eV) -41.87149 -40.13843 -38.58562 -38.34971 -35.91942 -34.08819 -33.78458 -33.17143 -32.77808 -30.67639 -29.51429 -27.36600 -27.29119 -25.20107 -24.71910 -23.49238 -22.47393 -22.04658 -21.57193 -20.96813 -18.87162 -18.56539 -18.29051 -17.52581 -16.95605 -16.60222 -16.49134 -16.41395 -16.06190 -15.67948 -15.50456 -15.30979 -14.98289 -14.73087 -14.60850 -14.32177 -14.24307 -14.06825 -13.61181 -13.54833 -13.49658 -13.06112 -12.90559 -12.80691 -12.75143 -12.65848 -12.41927 -12.23962 -12.17822 -11.81883 -11.72892 -11.61304 -11.58310 -11.11073 -11.01981 -10.78335 -10.32413 -10.05982 -9.77491 -9.61100 -8.91172 -7.85208 -5.09533 0.24694 0.38784 1.43277 1.48717 1.53078 1.59807 2.10426 2.46819 2.58190 2.77684 3.22804 3.46463 3.60841 3.73782 3.89275 3.90562 4.06753 4.17012 4.19777 4.24132 4.31133 4.34807 4.48932 4.54828 4.59700 4.62216 4.66620 4.72174 4.82051 4.86402 4.92711 4.96700 5.03178 5.04408 5.11175 5.17597 5.24801 5.39401 5.42072 5.46295 5.49444 5.54144 5.57097 5.66851 5.81637 5.86279 6.02634 6.16946 6.32039 6.53188 7.14480 7.20111 7.90583 8.31442 9.17667 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.016530 B = 0.002825 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.453306 B = 9909.661529 C =10823.209920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.125 4.125 3 C 0.176 3.824 4 N -0.605 5.605 5 C -0.272 4.272 6 H 0.073 0.927 7 C -0.039 4.039 8 N -0.901 5.901 9 Si 0.946 3.054 10 H -0.289 1.289 11 H -0.302 1.302 12 H -0.274 1.274 13 C 0.147 3.853 14 C 0.109 3.891 15 N -0.697 5.697 16 C 0.521 3.479 17 O -0.577 6.577 18 C 0.131 3.869 19 H 0.107 0.893 20 O -0.379 6.379 21 C 0.052 3.948 22 C -0.113 4.113 23 C -0.072 4.072 24 C -0.124 4.124 25 C -0.111 4.111 26 C -0.137 4.137 27 C -0.127 4.127 28 C -0.134 4.134 29 H 0.045 0.955 30 H 0.042 0.958 31 H 0.054 0.946 32 H 0.021 0.979 33 H 0.062 0.938 34 H 0.054 0.946 35 H 0.029 0.971 36 H 0.247 0.753 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.044 0.956 40 H 0.033 0.967 41 H 0.417 0.583 42 H 0.067 0.933 43 H 0.132 0.868 44 H 0.095 0.905 45 H 0.116 0.884 46 H 0.156 0.844 47 H 0.151 0.849 48 H 0.133 0.867 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.043 -2.790 -25.644 26.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.165 4.165 3 C 0.051 3.949 4 N -0.326 5.326 5 C -0.401 4.401 6 H 0.091 0.909 7 C -0.236 4.236 8 N -0.546 5.546 9 Si 0.775 3.225 10 H -0.216 1.216 11 H -0.229 1.229 12 H -0.199 1.199 13 C 0.020 3.980 14 C -0.017 4.017 15 N -0.348 5.348 16 C 0.307 3.693 17 O -0.458 6.458 18 C 0.070 3.930 19 H 0.124 0.876 20 O -0.298 6.298 21 C -0.023 4.023 22 C -0.149 4.149 23 C -0.073 4.073 24 C -0.141 4.141 25 C -0.129 4.129 26 C -0.155 4.155 27 C -0.145 4.145 28 C -0.135 4.135 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.040 0.960 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.047 0.953 36 H 0.057 0.943 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.062 0.938 40 H 0.051 0.949 41 H 0.255 0.745 42 H 0.085 0.915 43 H 0.150 0.850 44 H 0.113 0.887 45 H 0.134 0.866 46 H 0.173 0.827 47 H 0.169 0.831 48 H 0.151 0.849 49 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 6.675 -3.272 -24.948 26.032 hybrid contribution 0.154 -0.095 1.252 1.265 sum 6.829 -3.367 -23.696 24.889 Atomic orbital electron populations 1.21533 0.96019 1.00451 1.00666 1.22041 0.95158 0.99639 0.99641 1.20738 0.81729 0.94650 0.97766 1.44457 1.02209 1.83918 1.02008 1.19448 0.92111 1.43923 0.84612 0.90939 1.25274 0.98614 1.00559 0.99155 1.70379 1.21411 1.37675 1.25127 0.85576 0.78119 0.79392 0.79407 1.21620 1.22937 1.19945 1.21037 0.97016 0.91625 0.88315 1.22215 0.94612 1.01150 0.83748 1.45937 1.56238 1.08805 1.23840 1.20559 0.80072 0.83485 0.85194 1.90683 1.56732 1.37965 1.60377 1.20760 0.95014 0.87281 0.89944 0.87554 1.88002 1.75575 1.27029 1.39227 1.23028 0.93703 1.04977 0.80635 1.21250 0.97063 0.95796 1.00840 1.19836 0.98334 0.97347 0.91738 1.21467 0.96284 0.96502 0.99875 1.21538 0.98390 0.96302 0.96637 1.21355 0.99604 1.00941 0.93557 1.21502 0.96352 0.96312 1.00369 1.19720 1.00573 0.98459 0.94775 0.93540 0.93893 0.92698 0.96002 0.91991 0.92806 0.95302 0.94311 0.91923 0.91378 0.93820 0.94897 0.74497 0.91469 0.84996 0.88724 0.86567 0.82665 0.83129 0.84898 0.86595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.97 9.91 71.98 0.71 -4.26 16 2 C -0.13 -5.81 5.66 30.59 0.17 -5.64 16 3 C 0.18 8.36 4.93 86.38 0.43 8.79 16 4 N -0.61 -29.46 2.54 -701.99 -1.78 -31.24 16 5 C -0.27 -14.67 9.64 84.03 0.81 -13.86 16 6 H 0.07 3.88 7.99 -2.91 -0.02 3.86 16 7 C -0.04 -2.15 4.71 84.86 0.40 -1.75 16 8 N -0.90 -51.08 8.98 21.65 0.19 -50.88 16 9 Si 0.95 44.63 29.66 68.60 2.03 46.66 16 10 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 11 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 12 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 13 C 0.15 5.79 5.82 86.38 0.50 6.29 16 14 C 0.11 4.42 5.89 86.38 0.51 4.93 16 15 N -0.70 -22.89 5.47 -463.05 -2.53 -25.43 16 16 C 0.52 17.76 6.86 87.66 0.60 18.36 16 17 O -0.58 -24.23 14.80 -3.05 -0.05 -24.27 16 18 C 0.13 3.35 3.22 29.09 0.09 3.44 16 19 H 0.11 2.54 8.14 -2.38 -0.02 2.52 16 20 O -0.38 -7.88 9.20 -148.98 -1.37 -9.25 16 21 C 0.05 0.64 6.85 71.97 0.49 1.13 16 22 C -0.11 -1.27 6.01 29.85 0.18 -1.09 16 23 C -0.07 -1.33 5.78 -19.84 -0.11 -1.44 16 24 C -0.12 -1.90 9.68 22.35 0.22 -1.68 16 25 C -0.11 -1.86 10.05 22.24 0.22 -1.64 16 26 C -0.14 -3.01 10.05 22.23 0.22 -2.78 16 27 C -0.13 -3.49 9.06 22.32 0.20 -3.29 16 28 C -0.13 -3.30 5.45 -19.89 -0.11 -3.41 16 29 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.02 0.99 5.99 -2.39 -0.01 0.98 16 33 H 0.06 3.40 6.24 -2.39 -0.01 3.39 16 34 H 0.05 2.85 6.01 -2.39 -0.01 2.84 16 35 H 0.03 1.22 7.97 -2.38 -0.02 1.20 16 36 H 0.25 13.76 8.31 -92.71 -0.77 12.99 16 37 H 0.06 2.33 8.03 -2.38 -0.02 2.31 16 38 H 0.07 2.35 7.95 -2.39 -0.02 2.33 16 39 H 0.04 1.97 5.94 -2.38 -0.01 1.95 16 40 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.42 11.36 7.35 -92.71 -0.68 10.68 16 42 H 0.07 0.73 8.07 -2.39 -0.02 0.71 16 43 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 45 H 0.12 0.65 8.14 -2.39 -0.02 0.64 16 46 H 0.16 1.34 8.06 -2.91 -0.02 1.32 16 47 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 48 H 0.13 2.51 8.06 -2.91 -0.02 2.49 16 49 H 0.12 3.80 5.85 -2.91 -0.02 3.79 16 Total: -1.00 -68.93 386.54 2.31 -66.62 By element: Atomic # 1 Polarization: 25.42 SS G_CDS: 0.27 Total: 25.69 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: 5.54 Total: 2.10 kcal Atomic # 7 Polarization: -103.43 SS G_CDS: -4.12 Total: -107.55 kcal Atomic # 8 Polarization: -32.10 SS G_CDS: -1.42 Total: -33.52 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -68.93 2.31 -66.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713548604.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.382 kcal (2) G-P(sol) polarization free energy of solvation -68.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.72 seconds