Wall clock time and date at job start Tue Mar 31 2020 16:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.46780 * 2 1 4 4 N 1.46493 * 109.47504 * 120.00145 * 2 1 3 5 5 C 1.36942 * 119.99936 * 302.24065 * 4 2 1 6 6 H 1.07998 * 120.00069 * 321.91834 * 5 4 2 7 7 C 1.38807 * 119.99920 * 141.91015 * 5 4 2 8 8 N 1.31616 * 120.00391 * 338.46272 * 7 5 4 9 9 Si 1.86806 * 119.99949 * 158.45803 * 7 5 4 10 10 H 1.48502 * 109.46772 * 90.00413 * 9 7 5 11 11 H 1.48501 * 109.47180 * 210.00046 * 9 7 5 12 12 H 1.48494 * 109.47074 * 330.00477 * 9 7 5 13 13 C 1.46494 * 120.00340 * 122.24610 * 4 2 1 14 14 C 1.52999 * 109.47490 * 89.99611 * 13 4 2 15 15 C 1.53001 * 109.46995 * 180.02562 * 14 13 4 16 16 N 1.46498 * 109.47048 * 179.97438 * 15 14 13 17 17 C 1.34780 * 120.00383 * 180.02562 * 16 15 14 18 18 O 1.21588 * 119.99384 * 0.02562 * 17 16 15 19 19 C 1.47529 * 120.00210 * 180.02562 * 17 16 15 20 20 C 1.39531 * 120.05534 * 0.02562 * 19 17 16 21 21 C 1.37782 * 120.18750 * 179.97438 * 20 19 17 22 22 C 1.38651 * 119.97504 * 0.19510 * 21 20 19 23 23 C 1.37662 * 120.31785 * 0.02562 * 22 21 20 24 24 C 1.38870 * 120.87000 * 359.61084 * 23 22 21 25 25 O 1.35859 * 111.29795 * 181.03922 * 24 23 22 26 26 C 1.43777 * 109.23631 * 340.65333 * 25 24 23 27 27 C 1.51677 * 132.13187 * 179.08722 * 23 22 21 28 28 H 1.09000 * 109.47468 * 305.39648 * 1 2 3 29 29 H 1.08999 * 109.47318 * 65.40421 * 1 2 3 30 30 H 1.09006 * 109.46912 * 185.40371 * 1 2 3 31 31 H 1.09000 * 109.47361 * 240.00918 * 2 1 3 32 32 H 1.08995 * 109.47203 * 180.43806 * 3 2 1 33 33 H 1.08997 * 109.47075 * 300.43912 * 3 2 1 34 34 H 1.08997 * 109.46967 * 60.43970 * 3 2 1 35 35 H 0.97003 * 120.00809 * 179.97438 * 8 7 5 36 36 H 1.09003 * 109.46733 * 329.99742 * 13 4 2 37 37 H 1.09007 * 109.47455 * 210.00419 * 13 4 2 38 38 H 1.09001 * 109.46581 * 60.00590 * 14 13 4 39 39 H 1.08999 * 109.47234 * 300.00200 * 14 13 4 40 40 H 1.09003 * 109.47075 * 60.00224 * 15 14 13 41 41 H 1.08999 * 109.47198 * 300.00106 * 15 14 13 42 42 H 0.97000 * 120.00033 * 0.02562 * 16 15 14 43 43 H 1.07998 * 119.90563 * 0.02562 * 20 19 17 44 44 H 1.07998 * 120.01550 * 180.21900 * 21 20 19 45 45 H 1.07994 * 119.84097 * 179.97438 * 22 21 20 46 46 H 1.09002 * 110.75524 * 269.55879 * 26 25 24 47 47 H 1.09001 * 110.91148 * 146.26648 * 26 25 24 48 48 H 1.09002 * 110.94129 * 313.74163 * 27 23 22 49 49 H 1.09003 * 110.93803 * 77.39874 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.6502 -0.2501 2.4393 6 1 1.5673 0.8088 2.6344 7 6 1.3833 -1.1648 3.4488 8 7 1.0662 -2.4057 3.1456 9 14 1.4743 -0.6345 5.2377 10 1 0.1445 -0.1392 5.6753 11 1 1.8721 -1.7927 6.0777 12 1 2.4785 0.4498 5.3820 13 6 2.9008 -1.8523 1.0622 14 6 4.3582 -1.3869 1.0481 15 6 5.2796 -2.6002 0.9077 16 7 6.6751 -2.1545 0.8936 17 6 7.6696 -3.0567 0.7769 18 8 7.4084 -4.2405 0.6829 19 6 9.0749 -2.6079 0.7632 20 6 9.3759 -1.2498 0.8716 21 6 10.6874 -0.8277 0.8597 22 6 11.7120 -1.7535 0.7357 23 6 11.4262 -3.0955 0.6236 24 6 10.1135 -3.5482 0.6403 25 8 10.0570 -4.9019 0.5399 26 6 11.2987 -5.3893 0.0033 27 6 12.3136 -4.3146 0.4599 28 1 -0.3634 0.5952 0.8377 29 1 -0.3634 0.4277 -0.9344 30 1 -0.3633 -1.0232 0.0968 31 1 1.8934 -0.5137 -0.8901 32 1 3.1298 1.4427 -0.0079 33 1 1.6701 1.9587 -0.8860 34 1 1.6830 1.9541 0.8939 35 1 0.8801 -3.0450 3.8510 36 1 2.6767 -2.3733 0.1314 37 1 2.7430 -2.5273 1.9034 38 1 4.5822 -0.8659 1.9790 39 1 4.5160 -0.7120 0.2069 40 1 5.0555 -3.1209 -0.0234 41 1 5.1220 -3.2755 1.7487 42 1 6.8834 -1.2101 0.9682 43 1 8.5785 -0.5274 0.9659 44 1 10.9173 0.2239 0.9472 45 1 12.7392 -1.4202 0.7262 46 1 11.2552 -5.4419 -1.0845 47 1 11.5500 -6.3621 0.4259 48 1 13.0717 -4.1448 -0.3046 49 1 12.7744 -4.5911 1.4083 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713692351.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:08 Heat of formation + Delta-G solvation = -47.185915 kcal Electronic energy + Delta-G solvation = -28186.867800 eV Core-core repulsion = 24306.938416 eV Total energy + Delta-G solvation = -3879.929385 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.25734 -40.56054 -38.51879 -38.26404 -36.37588 -34.29690 -33.90792 -33.03841 -31.38033 -30.57502 -29.96447 -27.72086 -27.19134 -25.47293 -24.56788 -23.53594 -22.99151 -22.37556 -21.34367 -21.17709 -18.73590 -18.26071 -18.15154 -17.61959 -17.18884 -16.96106 -16.59269 -16.48336 -15.98166 -15.80580 -15.65052 -15.06358 -14.96386 -14.54655 -14.47346 -14.14296 -14.01925 -13.93389 -13.53783 -13.27219 -13.22817 -13.16357 -12.85411 -12.81211 -12.73550 -12.68347 -12.47125 -12.35646 -12.22551 -12.12168 -11.90954 -11.82885 -11.69912 -11.31535 -11.24193 -10.96449 -10.45193 -10.25153 -9.89807 -9.19970 -8.47237 -7.75691 -5.37266 -0.20138 0.27857 1.44788 1.48945 1.56344 1.81157 2.11601 2.29115 2.54157 2.76015 3.30864 3.41813 3.55393 3.61837 3.73701 3.95338 4.11478 4.16587 4.17073 4.29363 4.30844 4.37623 4.45561 4.51723 4.55869 4.65155 4.73305 4.79805 4.81559 4.85067 4.95044 4.96138 4.98705 5.09416 5.14950 5.17422 5.22241 5.24365 5.29997 5.37469 5.40762 5.48914 5.63294 5.63759 5.70035 5.76734 5.89666 6.11937 6.51811 6.54925 7.18572 7.25212 7.95761 8.48653 9.19861 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.015499 B = 0.002427 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.107924 B =11532.500397 C =11865.598043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.152 3.848 3 C -0.141 4.141 4 N -0.593 5.593 5 C -0.245 4.245 6 H 0.057 0.943 7 C -0.038 4.038 8 N -0.918 5.918 9 Si 0.946 3.054 10 H -0.287 1.287 11 H -0.299 1.299 12 H -0.269 1.269 13 C 0.152 3.848 14 C -0.120 4.120 15 C 0.134 3.866 16 N -0.710 5.710 17 C 0.546 3.454 18 O -0.582 6.582 19 C -0.187 4.187 20 C -0.055 4.055 21 C -0.148 4.148 22 C -0.038 4.038 23 C -0.192 4.192 24 C 0.133 3.867 25 O -0.320 6.320 26 C 0.032 3.968 27 C -0.099 4.099 28 H 0.036 0.964 29 H 0.065 0.935 30 H 0.021 0.979 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.066 0.934 34 H 0.037 0.963 35 H 0.247 0.753 36 H 0.025 0.975 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.071 0.929 40 H 0.058 0.942 41 H 0.041 0.959 42 H 0.412 0.588 43 H 0.154 0.846 44 H 0.171 0.829 45 H 0.167 0.833 46 H 0.085 0.915 47 H 0.125 0.875 48 H 0.123 0.877 49 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.771 4.249 -8.438 27.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.046 3.954 3 C -0.200 4.200 4 N -0.314 5.314 5 C -0.375 4.375 6 H 0.075 0.925 7 C -0.235 4.235 8 N -0.563 5.563 9 Si 0.774 3.226 10 H -0.214 1.214 11 H -0.225 1.225 12 H -0.194 1.194 13 C 0.025 3.975 14 C -0.160 4.160 15 C 0.010 3.990 16 N -0.363 5.363 17 C 0.335 3.665 18 O -0.463 6.463 19 C -0.191 4.191 20 C -0.074 4.074 21 C -0.166 4.166 22 C -0.056 4.056 23 C -0.193 4.193 24 C 0.085 3.915 25 O -0.233 6.233 26 C -0.042 4.042 27 C -0.135 4.135 28 H 0.055 0.945 29 H 0.083 0.917 30 H 0.041 0.959 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.043 0.957 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.059 0.941 42 H 0.250 0.750 43 H 0.171 0.829 44 H 0.188 0.812 45 H 0.185 0.815 46 H 0.103 0.897 47 H 0.143 0.857 48 H 0.141 0.859 49 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 25.313 3.117 -8.369 26.842 hybrid contribution -0.585 -0.132 1.260 1.396 sum 24.728 2.984 -7.109 25.902 Atomic orbital electron populations 1.21975 0.97914 0.99631 1.00090 1.20674 0.92518 0.93251 0.88989 1.22023 1.00418 0.96887 1.00689 1.44065 1.52402 1.33441 1.01472 1.19030 1.39711 0.91042 0.87745 0.92523 1.25790 0.99366 0.96578 1.01768 1.70138 1.48978 1.05115 1.32049 0.85626 0.77909 0.77111 0.81904 1.21356 1.22547 1.19352 1.20657 0.87235 0.90277 0.99350 1.22128 0.96102 0.96033 1.01743 1.21150 0.79743 0.97520 1.00610 1.45864 1.05727 1.10752 1.73952 1.18695 0.86287 0.85478 0.75991 1.90779 1.85269 1.18538 1.51699 1.19371 0.90137 0.94102 1.15453 1.21397 0.99399 0.91803 0.94751 1.21437 0.90908 1.01817 1.02414 1.20984 1.01770 0.89672 0.93152 1.21233 0.92595 0.97158 1.08329 1.19915 0.94405 0.83675 0.93482 1.86974 1.40465 1.17196 1.78704 1.24270 0.79952 0.99852 1.00103 1.21874 0.97533 0.89339 1.04771 0.94526 0.91651 0.95925 0.92450 0.93236 0.91548 0.94371 0.94402 0.95666 0.92465 0.92601 0.91050 0.92405 0.94083 0.74966 0.82861 0.81159 0.81538 0.89699 0.85669 0.85928 0.87754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.45 9.03 71.98 0.65 -4.80 16 2 C 0.15 6.01 3.36 44.99 0.15 6.17 16 3 C -0.14 -4.73 9.20 71.99 0.66 -4.07 16 4 N -0.59 -28.09 2.36 -678.05 -1.60 -29.69 16 5 C -0.24 -12.83 8.23 84.03 0.69 -12.14 16 6 H 0.06 2.97 6.95 -2.91 -0.02 2.95 16 7 C -0.04 -2.09 4.94 84.86 0.42 -1.67 16 8 N -0.92 -54.07 11.52 21.65 0.25 -53.82 16 9 Si 0.95 44.67 29.61 68.60 2.03 46.70 16 10 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 11 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 12 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 13 C 0.15 6.97 5.27 86.38 0.46 7.42 16 14 C -0.12 -4.42 5.65 30.59 0.17 -4.24 16 15 C 0.13 4.85 5.67 86.38 0.49 5.34 16 16 N -0.71 -21.84 5.50 -466.27 -2.57 -24.41 16 17 C 0.55 19.23 7.76 86.69 0.67 19.90 16 18 O -0.58 -26.04 15.87 10.90 0.17 -25.87 16 19 C -0.19 -5.19 5.89 -19.93 -0.12 -5.31 16 20 C -0.05 -1.02 9.51 22.47 0.21 -0.80 16 21 C -0.15 -1.87 10.05 22.26 0.22 -1.65 16 22 C -0.04 -0.47 10.02 22.23 0.22 -0.24 16 23 C -0.19 -3.43 6.27 -19.54 -0.12 -3.55 16 24 C 0.13 3.62 6.72 23.01 0.15 3.78 16 25 O -0.32 -9.62 10.13 -77.07 -0.78 -10.40 16 26 C 0.03 0.54 8.01 72.56 0.58 1.12 16 27 C -0.10 -1.14 7.12 30.74 0.22 -0.93 16 28 H 0.04 1.54 7.80 -2.39 -0.02 1.53 16 29 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.02 0.99 8.14 -2.38 -0.02 0.97 16 31 H 0.06 2.13 7.78 -2.39 -0.02 2.11 16 32 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.04 1.39 7.06 -2.39 -0.02 1.37 16 35 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 36 H 0.02 1.12 7.90 -2.39 -0.02 1.10 16 37 H 0.06 3.10 5.56 -2.38 -0.01 3.09 16 38 H 0.06 2.17 8.14 -2.39 -0.02 2.16 16 39 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.41 9.67 6.48 -92.71 -0.60 9.07 16 43 H 0.15 2.10 6.37 -2.91 -0.02 2.09 16 44 H 0.17 0.95 8.06 -2.91 -0.02 0.92 16 45 H 0.17 0.79 8.06 -2.91 -0.02 0.76 16 46 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 48 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 49 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -77.13 397.07 3.59 -73.54 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: 0.34 Total: 19.62 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: 5.74 Total: 4.32 kcal Atomic # 7 Polarization: -104.00 SS G_CDS: -3.92 Total: -107.92 kcal Atomic # 8 Polarization: -35.66 SS G_CDS: -0.61 Total: -36.27 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -77.13 3.59 -73.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713692351.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.355 kcal (2) G-P(sol) polarization free energy of solvation -77.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds