Wall clock time and date at job start Tue Mar 31 2020 16:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47078 * 2 1 4 4 N 1.46495 * 109.47072 * 185.29687 * 3 2 1 5 5 C 1.34778 * 119.99742 * 85.16704 * 4 3 2 6 6 O 1.21284 * 119.99905 * 180.02562 * 5 4 3 7 7 C 1.50699 * 120.00295 * 359.71897 * 5 4 3 8 8 H 1.09004 * 115.54689 * 34.55551 * 7 5 4 9 9 C 1.52992 * 117.50033 * 248.89037 * 7 5 4 10 10 C 1.52997 * 60.00122 * 252.50736 * 9 7 5 11 11 H 1.08993 * 117.49915 * 107.48850 * 10 9 7 12 12 C 1.50701 * 117.50114 * 252.51510 * 10 9 7 13 13 C 1.34517 * 125.78998 * 188.33850 * 12 10 9 14 14 C 1.41381 * 106.83622 * 179.88448 * 13 12 10 15 15 C 1.34512 * 106.84342 * 0.37135 * 14 13 12 16 16 O 1.34298 * 108.41978 * 359.77035 * 15 14 13 17 17 C 1.46499 * 120.00217 * 265.16165 * 4 3 2 18 18 H 1.08995 * 110.88472 * 179.97438 * 17 4 3 19 19 C 1.55155 * 111.00240 * 56.04533 * 17 4 3 20 20 C 1.54320 * 102.94382 * 277.42891 * 19 17 4 21 21 N 1.47018 * 107.27238 * 337.80572 * 20 19 17 22 22 C 1.36938 * 125.65117 * 178.90763 * 21 20 19 23 23 H 1.08000 * 120.00179 * 180.02562 * 22 21 20 24 24 C 1.38814 * 119.99880 * 0.02635 * 22 21 20 25 25 N 1.31627 * 119.99869 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00084 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.46988 * 90.00110 * 26 24 22 28 28 H 1.48497 * 109.46899 * 209.99808 * 26 24 22 29 29 H 1.48500 * 109.46991 * 329.99764 * 26 24 22 30 30 C 1.47525 * 108.71361 * 358.94579 * 21 20 19 31 31 H 1.09007 * 109.47251 * 299.99547 * 1 2 3 32 32 H 1.08995 * 109.47697 * 59.99844 * 1 2 3 33 33 H 1.09007 * 109.47060 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.46766 * 240.00499 * 2 1 3 35 35 H 1.08997 * 109.47052 * 120.00531 * 2 1 3 36 36 H 1.09004 * 109.46466 * 65.30224 * 3 2 1 37 37 H 1.08994 * 109.47109 * 305.30099 * 3 2 1 38 38 H 1.09003 * 117.50302 * 359.97438 * 9 7 5 39 39 H 1.09005 * 117.50286 * 144.99339 * 9 7 5 40 40 H 1.07993 * 126.57903 * 0.02562 * 13 12 10 41 41 H 1.08008 * 126.57705 * 180.16084 * 14 13 12 42 42 H 1.08004 * 125.78290 * 179.79587 * 15 14 13 43 43 H 1.09002 * 110.72107 * 35.79414 * 19 17 4 44 44 H 1.09003 * 110.71936 * 159.06304 * 19 17 4 45 45 H 1.08996 * 109.88577 * 97.22845 * 20 19 17 46 46 H 1.09004 * 109.88095 * 218.23365 * 20 19 17 47 47 H 0.96999 * 119.99701 * 180.02562 * 25 24 22 48 48 H 1.09007 * 110.37141 * 265.30540 * 30 21 20 49 49 H 1.09005 * 110.41449 * 142.95318 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4994 1.4445 -0.1275 5 6 4.0693 1.3829 -1.3473 6 8 5.2775 1.3840 -1.4529 7 6 3.2054 1.3056 -2.5797 8 1 2.2665 1.8572 -2.5309 9 6 3.2140 -0.0059 -3.3674 10 6 3.9123 1.2316 -3.9345 11 1 5.0022 1.2389 -3.9345 12 6 3.2574 1.9274 -5.0999 13 6 3.7963 2.9239 -5.8251 14 6 2.8456 3.2728 -6.8117 15 6 1.7793 2.4743 -6.6251 16 8 2.0344 1.6614 -5.5870 17 6 4.3393 1.5135 1.0708 18 1 5.3964 1.5053 0.8054 19 6 4.0025 0.3607 2.0531 20 6 2.7733 0.9022 2.8130 21 7 2.7971 2.3673 2.6941 22 6 1.8649 3.2255 3.2135 23 1 1.9724 4.2906 3.0704 24 6 0.7818 2.7265 3.9239 25 7 0.6505 1.4283 4.0978 26 14 -0.4903 3.8970 4.6318 27 1 -1.5660 4.1218 3.6331 28 1 -1.0737 3.3078 5.8637 29 1 0.1578 5.1919 4.9613 30 6 3.9911 2.7602 1.9218 31 1 -0.3634 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 1.7562 1.9281 0.9337 37 1 1.6012 1.9830 -0.8387 38 1 3.8449 -0.8129 -2.9945 39 1 2.2809 -0.3173 -3.8369 40 1 4.7694 3.3701 -5.6826 41 1 2.9533 4.0366 -7.5677 42 1 0.8722 2.4849 -7.2112 43 1 3.7492 -0.5487 1.5082 44 1 4.8318 0.1830 2.7379 45 1 1.8594 0.5089 2.3679 46 1 2.8289 0.6121 3.8623 47 1 -0.1065 1.0796 4.5939 48 1 4.8146 3.0030 2.5935 49 1 3.7642 3.6088 1.2764 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713719954.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:38 Heat of formation + Delta-G solvation = 41.692800 kcal Electronic energy + Delta-G solvation = -29909.730809 eV Core-core repulsion = 26033.655495 eV Total energy + Delta-G solvation = -3876.075315 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -42.72149 -40.21121 -38.06337 -36.28145 -34.88015 -33.12554 -32.86907 -31.71880 -29.70278 -29.27899 -27.61516 -25.67608 -24.92362 -23.84825 -23.27995 -21.81912 -21.32468 -20.51143 -20.09515 -19.98190 -18.38760 -17.88525 -17.05706 -16.91625 -16.21258 -15.89425 -15.20096 -14.72565 -14.58473 -14.50796 -14.13328 -13.78832 -13.39922 -13.27738 -12.95782 -12.89390 -12.72078 -12.65241 -12.20725 -12.03239 -12.00025 -11.90537 -11.54380 -11.24461 -11.12226 -11.00921 -10.96695 -10.89896 -10.65954 -10.53531 -10.25900 -10.16735 -10.07910 -10.02780 -9.90928 -9.68330 -9.35163 -8.68126 -8.48171 -8.18842 -6.84669 -5.77522 -3.11561 1.51128 2.41325 2.72226 2.79380 3.31909 3.35754 3.42466 3.43238 3.81795 4.33705 4.44602 4.58184 4.68447 4.80336 4.90723 5.02088 5.16078 5.33461 5.41493 5.43501 5.47879 5.51113 5.58258 5.64926 5.67765 5.72119 5.77408 5.86618 5.89268 5.92065 5.95857 5.99876 6.17514 6.22820 6.30595 6.34549 6.36750 6.49093 6.53571 6.61379 6.66757 6.74408 6.85036 7.00127 7.16137 7.52163 7.57618 7.78608 7.86215 8.18622 8.47717 9.15767 9.74863 10.40463 11.32929 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.014616 B = 0.003315 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.215571 B = 8445.466382 C = 9031.297551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.137 4.137 3 C 0.086 3.914 4 N -0.576 5.576 5 C 0.542 3.458 6 O -0.556 6.556 7 C -0.166 4.166 8 H 0.127 0.873 9 C -0.135 4.135 10 C -0.054 4.054 11 H 0.147 0.853 12 C 0.023 3.977 13 C -0.204 4.204 14 C -0.213 4.213 15 C -0.045 4.045 16 O -0.175 6.175 17 C 0.123 3.877 18 H 0.099 0.901 19 C -0.158 4.158 20 C 0.167 3.833 21 N -0.601 5.601 22 C -0.232 4.232 23 H 0.077 0.923 24 C -0.003 4.003 25 N -0.917 5.917 26 Si 0.908 3.092 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.282 1.282 30 C 0.124 3.876 31 H 0.068 0.932 32 H 0.045 0.955 33 H 0.048 0.952 34 H 0.049 0.951 35 H 0.076 0.924 36 H 0.138 0.862 37 H 0.059 0.941 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.149 0.851 41 H 0.148 0.852 42 H 0.202 0.798 43 H 0.064 0.936 44 H 0.066 0.934 45 H 0.063 0.937 46 H 0.040 0.960 47 H 0.252 0.748 48 H 0.031 0.969 49 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.332 -2.591 -17.592 17.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C -0.037 4.037 4 N -0.305 5.305 5 C 0.330 3.670 6 O -0.436 6.436 7 C -0.187 4.187 8 H 0.145 0.855 9 C -0.173 4.173 10 C -0.073 4.073 11 H 0.164 0.836 12 C -0.027 4.027 13 C -0.223 4.223 14 C -0.232 4.232 15 C -0.112 4.112 16 O -0.071 6.071 17 C 0.019 3.981 18 H 0.117 0.883 19 C -0.197 4.197 20 C 0.043 3.957 21 N -0.329 5.329 22 C -0.360 4.360 23 H 0.095 0.905 24 C -0.200 4.200 25 N -0.564 5.564 26 Si 0.739 3.261 27 H -0.216 1.216 28 H -0.217 1.217 29 H -0.208 1.208 30 C -0.003 4.003 31 H 0.087 0.913 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.094 0.906 36 H 0.156 0.844 37 H 0.077 0.923 38 H 0.126 0.874 39 H 0.127 0.873 40 H 0.166 0.834 41 H 0.165 0.835 42 H 0.219 0.781 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.081 0.919 46 H 0.059 0.941 47 H 0.063 0.937 48 H 0.049 0.951 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.567 -2.810 -17.345 17.758 hybrid contribution -0.799 0.888 0.303 1.232 sum 1.768 -1.922 -17.043 17.242 Atomic orbital electron populations 1.21649 0.95422 1.01172 1.02155 1.22017 0.96211 0.97353 1.01915 1.22251 0.77886 0.97337 1.06198 1.47726 1.07703 1.70345 1.04746 1.19454 0.87578 0.76124 0.83875 1.90639 1.14493 1.51881 1.86588 1.22414 1.01761 1.04127 0.90422 0.85507 1.23037 1.02979 0.90627 1.00645 1.20507 0.98922 1.00475 0.87362 0.83593 1.21404 0.84212 0.99064 0.98044 1.21549 1.02244 1.00094 0.98405 1.21836 0.94844 1.03800 1.02748 1.24004 1.01335 0.94148 0.91730 1.83979 1.31864 1.51674 1.39587 1.22257 0.94635 0.97185 0.84056 0.88305 1.23294 1.01029 0.97366 0.97977 1.21398 0.93327 0.83194 0.97796 1.44610 1.23614 1.02392 1.62236 1.19029 1.00159 0.88917 1.27861 0.90520 1.24756 0.98679 0.96038 1.00519 1.69961 1.31000 1.10063 1.45395 0.86177 0.81586 0.79870 0.78478 1.21600 1.21725 1.20793 1.21938 0.90942 0.94582 0.92835 0.91278 0.93629 0.93252 0.93229 0.90581 0.84439 0.92299 0.87370 0.87264 0.83352 0.83469 0.78128 0.91700 0.91495 0.91941 0.94141 0.93737 0.95140 0.93804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.91 37.16 0.37 -1.81 16 2 C -0.14 -2.12 5.35 -26.73 -0.14 -2.27 16 3 C 0.09 1.46 4.19 -4.04 -0.02 1.44 16 4 N -0.58 -9.86 2.52 -163.68 -0.41 -10.27 16 5 C 0.54 8.95 7.43 -10.99 -0.08 8.87 16 6 O -0.56 -10.49 15.64 5.55 0.09 -10.40 16 7 C -0.17 -2.23 4.59 -91.78 -0.42 -2.65 16 8 H 0.13 1.68 6.52 -51.93 -0.34 1.34 16 9 C -0.14 -1.52 9.66 -26.74 -0.26 -1.78 16 10 C -0.05 -0.66 5.75 -91.77 -0.53 -1.19 16 11 H 0.15 1.80 7.67 -51.93 -0.40 1.41 16 12 C 0.02 0.28 6.80 -35.62 -0.24 0.03 16 13 C -0.20 -2.31 10.81 -39.70 -0.43 -2.74 16 14 C -0.21 -2.09 10.91 -39.70 -0.43 -2.52 16 15 C -0.04 -0.42 12.09 29.42 0.36 -0.06 16 16 O -0.17 -2.05 10.36 5.73 0.06 -2.00 16 17 C 0.12 2.23 3.67 -65.78 -0.24 1.99 16 18 H 0.10 1.79 7.01 -51.93 -0.36 1.43 16 19 C -0.16 -2.88 5.99 -24.90 -0.15 -3.03 16 20 C 0.17 3.72 4.15 -3.07 -0.01 3.71 16 21 N -0.60 -14.13 1.92 -169.99 -0.33 -14.45 16 22 C -0.23 -6.01 9.91 -15.06 -0.15 -6.16 16 23 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 24 C 0.00 -0.08 5.49 -17.43 -0.10 -0.18 16 25 N -0.92 -24.84 10.31 55.49 0.57 -24.27 16 26 Si 0.91 21.11 29.55 -169.99 -5.02 16.09 16 27 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 28 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 29 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 30 C 0.12 2.51 6.56 -2.48 -0.02 2.50 16 31 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.05 0.69 7.54 -51.93 -0.39 0.30 16 35 H 0.08 1.31 4.67 -51.93 -0.24 1.07 16 36 H 0.14 2.89 4.33 -51.93 -0.22 2.66 16 37 H 0.06 0.92 6.22 -51.93 -0.32 0.60 16 38 H 0.11 1.18 8.14 -51.93 -0.42 0.75 16 39 H 0.11 1.11 7.97 -51.93 -0.41 0.69 16 40 H 0.15 1.50 8.06 -52.49 -0.42 1.07 16 41 H 0.15 1.09 8.06 -52.48 -0.42 0.67 16 42 H 0.20 1.09 8.06 -52.48 -0.42 0.67 16 43 H 0.06 1.12 6.81 -51.93 -0.35 0.76 16 44 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.06 1.46 4.35 -51.93 -0.23 1.23 16 46 H 0.04 1.03 7.51 -51.93 -0.39 0.64 16 47 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 48 H 0.03 0.62 8.14 -51.92 -0.42 0.19 16 49 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 382.77 15.07 5.77 5.77 Total: -1.00 -29.16 382.77 -9.21 -38.37 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -7.44 Total: 7.00 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: -2.49 Total: -5.84 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: -0.17 Total: -48.99 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.15 Total: -12.40 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.16 -9.21 -38.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713719954.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.060 kcal (2) G-P(sol) polarization free energy of solvation -29.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds