Wall clock time and date at job start Tue Mar 31 2020 16:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47078 * 2 1 4 4 N 1.46495 * 109.47072 * 185.29687 * 3 2 1 5 5 C 1.34778 * 119.99742 * 85.16704 * 4 3 2 6 6 O 1.21284 * 119.99905 * 180.02562 * 5 4 3 7 7 C 1.50699 * 120.00295 * 359.71897 * 5 4 3 8 8 H 1.09004 * 115.54689 * 34.55551 * 7 5 4 9 9 C 1.52992 * 117.50033 * 248.89037 * 7 5 4 10 10 C 1.52997 * 60.00122 * 252.50736 * 9 7 5 11 11 H 1.08993 * 117.49915 * 107.48850 * 10 9 7 12 12 C 1.50701 * 117.50114 * 252.51510 * 10 9 7 13 13 C 1.34517 * 125.78998 * 188.33850 * 12 10 9 14 14 C 1.41381 * 106.83622 * 179.88448 * 13 12 10 15 15 C 1.34512 * 106.84342 * 0.37135 * 14 13 12 16 16 O 1.34298 * 108.41978 * 359.77035 * 15 14 13 17 17 C 1.46499 * 120.00217 * 265.16165 * 4 3 2 18 18 H 1.08995 * 110.88472 * 179.97438 * 17 4 3 19 19 C 1.55155 * 111.00240 * 56.04533 * 17 4 3 20 20 C 1.54320 * 102.94382 * 277.42891 * 19 17 4 21 21 N 1.47018 * 107.27238 * 337.80572 * 20 19 17 22 22 C 1.36938 * 125.65117 * 178.90763 * 21 20 19 23 23 H 1.08000 * 120.00179 * 180.02562 * 22 21 20 24 24 C 1.38814 * 119.99880 * 0.02635 * 22 21 20 25 25 N 1.31627 * 119.99869 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00084 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.46988 * 90.00110 * 26 24 22 28 28 H 1.48497 * 109.46899 * 209.99808 * 26 24 22 29 29 H 1.48500 * 109.46991 * 329.99764 * 26 24 22 30 30 C 1.47525 * 108.71361 * 358.94579 * 21 20 19 31 31 H 1.09007 * 109.47251 * 299.99547 * 1 2 3 32 32 H 1.08995 * 109.47697 * 59.99844 * 1 2 3 33 33 H 1.09007 * 109.47060 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.46766 * 240.00499 * 2 1 3 35 35 H 1.08997 * 109.47052 * 120.00531 * 2 1 3 36 36 H 1.09004 * 109.46466 * 65.30224 * 3 2 1 37 37 H 1.08994 * 109.47109 * 305.30099 * 3 2 1 38 38 H 1.09003 * 117.50302 * 359.97438 * 9 7 5 39 39 H 1.09005 * 117.50286 * 144.99339 * 9 7 5 40 40 H 1.07993 * 126.57903 * 0.02562 * 13 12 10 41 41 H 1.08008 * 126.57705 * 180.16084 * 14 13 12 42 42 H 1.08004 * 125.78290 * 179.79587 * 15 14 13 43 43 H 1.09002 * 110.72107 * 35.79414 * 19 17 4 44 44 H 1.09003 * 110.71936 * 159.06304 * 19 17 4 45 45 H 1.08996 * 109.88577 * 97.22845 * 20 19 17 46 46 H 1.09004 * 109.88095 * 218.23365 * 20 19 17 47 47 H 0.96999 * 119.99701 * 180.02562 * 25 24 22 48 48 H 1.09007 * 110.37141 * 265.30540 * 30 21 20 49 49 H 1.09005 * 110.41449 * 142.95318 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4994 1.4445 -0.1275 5 6 4.0693 1.3829 -1.3473 6 8 5.2775 1.3840 -1.4529 7 6 3.2054 1.3056 -2.5797 8 1 2.2665 1.8572 -2.5309 9 6 3.2140 -0.0059 -3.3674 10 6 3.9123 1.2316 -3.9345 11 1 5.0022 1.2389 -3.9345 12 6 3.2574 1.9274 -5.0999 13 6 3.7963 2.9239 -5.8251 14 6 2.8456 3.2728 -6.8117 15 6 1.7793 2.4743 -6.6251 16 8 2.0344 1.6614 -5.5870 17 6 4.3393 1.5135 1.0708 18 1 5.3964 1.5053 0.8054 19 6 4.0025 0.3607 2.0531 20 6 2.7733 0.9022 2.8130 21 7 2.7971 2.3673 2.6941 22 6 1.8649 3.2255 3.2135 23 1 1.9724 4.2906 3.0704 24 6 0.7818 2.7265 3.9239 25 7 0.6505 1.4283 4.0978 26 14 -0.4903 3.8970 4.6318 27 1 -1.5660 4.1218 3.6331 28 1 -1.0737 3.3078 5.8637 29 1 0.1578 5.1919 4.9613 30 6 3.9911 2.7602 1.9218 31 1 -0.3634 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 1.7562 1.9281 0.9337 37 1 1.6012 1.9830 -0.8387 38 1 3.8449 -0.8129 -2.9945 39 1 2.2809 -0.3173 -3.8369 40 1 4.7694 3.3701 -5.6826 41 1 2.9533 4.0366 -7.5677 42 1 0.8722 2.4849 -7.2112 43 1 3.7492 -0.5487 1.5082 44 1 4.8318 0.1830 2.7379 45 1 1.8594 0.5089 2.3679 46 1 2.8289 0.6121 3.8623 47 1 -0.1065 1.0796 4.5939 48 1 4.8146 3.0030 2.5935 49 1 3.7642 3.6088 1.2764 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713719954.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:36 Heat of formation + Delta-G solvation = 28.329262 kcal Electronic energy + Delta-G solvation = -29910.310296 eV Core-core repulsion = 26033.655495 eV Total energy + Delta-G solvation = -3876.654801 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.50891 -41.55838 -39.49411 -37.43510 -36.39690 -34.51398 -33.90596 -33.28968 -31.15686 -30.42954 -29.21388 -27.06994 -26.54797 -25.25756 -24.13933 -22.63218 -22.58716 -21.91711 -21.74419 -20.95744 -19.71181 -18.95094 -18.88276 -17.98056 -17.48294 -16.84955 -16.66282 -16.25584 -15.91183 -15.76905 -15.57101 -15.39072 -14.75954 -14.36102 -14.09021 -13.98473 -13.84577 -13.73518 -13.62504 -13.51172 -13.39088 -12.96244 -12.90259 -12.84662 -12.77705 -12.57669 -12.45203 -12.04834 -12.01125 -11.96581 -11.83976 -11.75702 -11.69817 -11.48416 -11.31690 -10.81384 -10.73260 -10.63171 -9.65080 -9.28291 -8.75325 -7.78979 -5.13473 0.69674 1.44518 1.49013 1.50372 1.57730 1.68866 1.93017 2.11563 2.52205 2.83680 3.35368 3.40418 3.56672 3.65033 3.70473 3.86957 3.97323 4.04523 4.08293 4.15433 4.21851 4.28121 4.32171 4.37279 4.46139 4.64155 4.67017 4.70967 4.74079 4.85005 4.87457 4.90566 4.95818 5.00465 5.03093 5.03814 5.06991 5.11997 5.21425 5.31936 5.39884 5.44542 5.52676 5.60775 5.72935 5.74229 5.89928 6.21497 6.25047 6.51165 7.14770 7.16189 7.80534 8.45448 9.29539 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.014616 B = 0.003315 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.215571 B = 8445.466382 C = 9031.297551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.093 3.907 4 N -0.579 5.579 5 C 0.543 3.457 6 O -0.581 6.581 7 C -0.177 4.177 8 H 0.130 0.870 9 C -0.116 4.116 10 C -0.049 4.049 11 H 0.140 0.860 12 C 0.000 4.000 13 C -0.215 4.215 14 C -0.227 4.227 15 C -0.039 4.039 16 O -0.186 6.186 17 C 0.133 3.867 18 H 0.106 0.894 19 C -0.143 4.143 20 C 0.179 3.821 21 N -0.613 5.613 22 C -0.240 4.240 23 H 0.075 0.925 24 C -0.049 4.049 25 N -0.936 5.936 26 Si 0.966 3.034 27 H -0.285 1.285 28 H -0.297 1.297 29 H -0.277 1.277 30 C 0.124 3.876 31 H 0.032 0.968 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.056 0.944 36 H 0.099 0.901 37 H 0.074 0.926 38 H 0.114 0.886 39 H 0.125 0.875 40 H 0.153 0.847 41 H 0.169 0.831 42 H 0.239 0.761 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.050 0.950 46 H 0.001 0.999 47 H 0.246 0.754 48 H 0.035 0.965 49 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.890 -2.758 -19.995 20.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.166 4.166 3 C -0.029 4.029 4 N -0.308 5.308 5 C 0.333 3.667 6 O -0.463 6.463 7 C -0.198 4.198 8 H 0.147 0.853 9 C -0.153 4.153 10 C -0.067 4.067 11 H 0.158 0.842 12 C -0.049 4.049 13 C -0.234 4.234 14 C -0.246 4.246 15 C -0.106 4.106 16 O -0.083 6.083 17 C 0.028 3.972 18 H 0.124 0.876 19 C -0.182 4.182 20 C 0.054 3.946 21 N -0.339 5.339 22 C -0.369 4.369 23 H 0.093 0.907 24 C -0.243 4.243 25 N -0.585 5.585 26 Si 0.795 3.205 27 H -0.212 1.212 28 H -0.224 1.224 29 H -0.203 1.203 30 C -0.003 4.003 31 H 0.052 0.948 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.117 0.883 37 H 0.092 0.908 38 H 0.132 0.868 39 H 0.143 0.857 40 H 0.170 0.830 41 H 0.186 0.814 42 H 0.255 0.745 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.068 0.932 46 H 0.019 0.981 47 H 0.056 0.944 48 H 0.053 0.947 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 2.140 -2.966 -19.766 20.102 hybrid contribution -0.633 1.007 0.975 1.538 sum 1.507 -1.959 -18.791 18.953 Atomic orbital electron populations 1.21579 0.94918 1.01949 1.01265 1.21912 0.96528 0.96203 1.01950 1.22074 0.77903 0.98215 1.04724 1.47748 1.07594 1.70617 1.04791 1.19910 0.87564 0.75002 0.84258 1.90625 1.15735 1.52961 1.86931 1.22294 1.01510 1.06404 0.89546 0.85267 1.23146 1.03522 0.89809 0.98853 1.20421 0.98647 1.00990 0.86655 0.84226 1.21384 0.84879 0.99966 0.98700 1.21848 1.02847 0.99920 0.98799 1.22169 0.94655 1.04705 1.03086 1.24811 1.02304 0.92749 0.90696 1.83966 1.31621 1.52366 1.40359 1.22082 0.95138 0.95679 0.84295 0.87623 1.23160 0.99477 0.97724 0.97830 1.21158 0.94796 0.82808 0.95800 1.44731 1.24095 1.02740 1.62379 1.19258 1.00783 0.89290 1.27556 0.90749 1.25391 1.00337 0.97309 1.01291 1.70139 1.31127 1.11252 1.45956 0.85274 0.79506 0.78300 0.77379 1.21233 1.22404 1.20266 1.22014 0.89883 0.95531 0.92836 0.94844 0.91711 0.91670 0.90938 0.92529 0.88274 0.90826 0.86816 0.85656 0.82956 0.81371 0.74471 0.90285 0.90247 0.93181 0.98094 0.94449 0.94719 0.94308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.01 9.91 71.98 0.71 -3.30 16 2 C -0.13 -3.83 5.35 30.59 0.16 -3.66 16 3 C 0.09 3.14 4.19 86.38 0.36 3.50 16 4 N -0.58 -19.32 2.52 -790.15 -1.99 -21.32 16 5 C 0.54 17.25 7.43 87.66 0.65 17.90 16 6 O -0.58 -21.32 15.64 -3.04 -0.05 -21.37 16 7 C -0.18 -4.41 4.59 -11.54 -0.05 -4.47 16 8 H 0.13 3.18 6.52 -2.38 -0.02 3.16 16 9 C -0.12 -2.31 9.66 30.59 0.30 -2.01 16 10 C -0.05 -1.11 5.75 -11.54 -0.07 -1.17 16 11 H 0.14 3.33 7.67 -2.39 -0.02 3.31 16 12 C 0.00 0.01 6.80 24.83 0.17 0.18 16 13 C -0.21 -4.57 10.81 22.19 0.24 -4.33 16 14 C -0.23 -3.91 10.91 22.19 0.24 -3.67 16 15 C -0.04 -0.61 12.09 66.97 0.81 0.20 16 16 O -0.19 -3.93 10.36 -2.42 -0.03 -3.95 16 17 C 0.13 4.75 3.67 46.38 0.17 4.92 16 18 H 0.11 3.71 7.01 -2.39 -0.02 3.69 16 19 C -0.14 -5.17 5.99 31.78 0.19 -4.98 16 20 C 0.18 8.18 4.15 86.73 0.36 8.54 16 21 N -0.61 -29.42 1.92 -691.74 -1.33 -30.74 16 22 C -0.24 -12.71 9.91 84.03 0.83 -11.88 16 23 H 0.07 3.88 7.83 -2.91 -0.02 3.85 16 24 C -0.05 -2.62 5.49 84.86 0.47 -2.16 16 25 N -0.94 -52.27 10.31 21.65 0.22 -52.05 16 26 Si 0.97 44.05 29.55 68.60 2.03 46.08 16 27 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 28 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 29 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 30 C 0.12 5.05 6.56 86.83 0.57 5.61 16 31 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 32 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 34 H 0.07 1.84 7.54 -2.39 -0.02 1.83 16 35 H 0.06 1.93 4.67 -2.39 -0.01 1.92 16 36 H 0.10 4.23 4.33 -2.39 -0.01 4.22 16 37 H 0.07 2.23 6.22 -2.39 -0.01 2.21 16 38 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.13 2.12 7.97 -2.38 -0.02 2.10 16 40 H 0.15 2.95 8.06 -2.91 -0.02 2.92 16 41 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 42 H 0.24 1.62 8.06 -2.91 -0.02 1.60 16 43 H 0.08 2.65 6.81 -2.39 -0.02 2.63 16 44 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 45 H 0.05 2.42 4.35 -2.39 -0.01 2.41 16 46 H 0.00 0.04 7.51 -2.38 -0.02 0.03 16 47 H 0.25 13.55 8.31 -92.71 -0.77 12.78 16 48 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 49 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 Total: -1.00 -63.98 382.77 5.92 -58.06 By element: Atomic # 1 Polarization: 25.13 SS G_CDS: 0.95 Total: 26.08 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: 6.11 Total: -0.78 kcal Atomic # 7 Polarization: -101.01 SS G_CDS: -3.10 Total: -104.11 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: -0.07 Total: -25.32 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -63.98 5.92 -58.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713719954.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.386 kcal (2) G-P(sol) polarization free energy of solvation -63.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds