Wall clock time and date at job start Tue Mar 31 2020 16:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46963 * 2 1 4 4 N 1.46500 * 109.46961 * 174.86693 * 3 2 1 5 5 C 1.34771 * 120.00024 * 275.88039 * 4 3 2 6 6 O 1.21289 * 119.99874 * 180.02562 * 5 4 3 7 7 C 1.50696 * 120.00334 * 359.97438 * 5 4 3 8 8 H 1.09007 * 115.54522 * 34.33681 * 7 5 4 9 9 C 1.52993 * 117.50514 * 248.62432 * 7 5 4 10 10 C 1.53000 * 117.50155 * 179.97438 * 7 5 4 11 11 H 1.09001 * 117.49654 * 0.02562 * 10 7 5 12 12 C 1.50700 * 117.50159 * 215.00547 * 10 7 5 13 13 C 1.34507 * 125.78823 * 119.71928 * 12 10 7 14 14 C 1.41383 * 106.84357 * 179.88898 * 13 12 10 15 15 C 1.34515 * 106.83591 * 0.37391 * 14 13 12 16 16 O 1.34299 * 125.78891 * 300.02657 * 12 10 7 17 17 C 1.46502 * 119.99808 * 95.88361 * 4 3 2 18 18 H 1.08996 * 110.64026 * 188.69329 * 17 4 3 19 19 C 1.55153 * 110.71983 * 311.83540 * 17 4 3 20 20 C 1.55127 * 101.48572 * 153.73465 * 19 17 4 21 21 N 1.47422 * 104.94245 * 323.22292 * 20 19 17 22 22 C 1.36938 * 125.65039 * 204.03657 * 21 20 19 23 23 H 1.08002 * 120.00415 * 179.97438 * 22 21 20 24 24 C 1.38817 * 119.99808 * 359.96059 * 22 21 20 25 25 N 1.31620 * 119.99877 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00060 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47129 * 59.99919 * 26 24 22 28 28 H 1.48502 * 109.47216 * 179.97438 * 26 24 22 29 29 H 1.48503 * 109.47094 * 300.00266 * 26 24 22 30 30 C 1.47022 * 108.70488 * 24.00132 * 21 20 19 31 31 H 1.09000 * 109.46935 * 299.99849 * 1 2 3 32 32 H 1.08999 * 109.47030 * 60.00051 * 1 2 3 33 33 H 1.08994 * 109.46618 * 180.02562 * 1 2 3 34 34 H 1.08994 * 109.47315 * 240.00286 * 2 1 3 35 35 H 1.09003 * 109.47222 * 119.99470 * 2 1 3 36 36 H 1.09000 * 109.47140 * 294.86853 * 3 2 1 37 37 H 1.09008 * 109.47171 * 54.86739 * 3 2 1 38 38 H 1.09005 * 117.49381 * 359.97438 * 9 7 5 39 39 H 1.08998 * 117.50376 * 145.01902 * 9 7 5 40 40 H 1.08005 * 126.58278 * 0.02844 * 13 12 10 41 41 H 1.07994 * 126.58403 * 180.11961 * 14 13 12 42 42 H 1.08000 * 125.78890 * 179.74688 * 15 14 13 43 43 H 1.08998 * 111.00461 * 271.93717 * 19 17 4 44 44 H 1.09005 * 111.00647 * 35.79556 * 19 17 4 45 45 H 1.08998 * 110.42166 * 204.29381 * 20 19 17 46 46 H 1.09006 * 110.30080 * 82.08719 * 20 19 17 47 47 H 0.97001 * 119.99678 * 180.02562 * 25 24 22 48 48 H 1.08995 * 109.88431 * 239.52259 * 30 21 20 49 49 H 1.09008 * 109.88235 * 118.35442 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4998 1.4444 0.1236 5 6 4.0732 1.3603 1.3403 6 8 5.2817 1.3623 1.4426 7 6 3.2128 1.2650 2.5739 8 1 2.2815 0.7108 2.4558 9 6 3.2066 2.4631 3.5253 10 6 3.9235 1.1716 3.9255 11 1 5.0135 1.1794 3.9226 12 6 3.2823 0.3210 4.9916 13 6 3.8372 -0.7539 5.5797 14 6 2.8950 -1.2416 6.5142 15 6 1.8174 -0.4405 6.4353 16 8 2.0576 0.5043 5.5114 17 6 4.3363 1.5377 -1.0755 18 1 5.3845 1.3728 -0.8265 19 6 3.8631 0.5284 -2.1548 20 6 4.3436 1.2210 -3.4571 21 7 4.1427 2.6617 -3.2178 22 6 3.9779 3.6162 -4.1859 23 1 3.8364 4.6498 -3.9066 24 6 3.9928 3.2551 -5.5262 25 7 4.1650 1.9954 -5.8665 26 14 3.7672 4.5569 -6.8467 27 1 4.8494 5.5677 -6.7353 28 1 3.8231 3.9182 -8.1862 29 1 2.4504 5.2199 -6.6684 30 6 4.1479 2.9041 -1.7678 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3632 -1.0276 0.0005 34 1 1.8934 -0.5138 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 1.7537 1.9291 -0.9324 37 1 1.6035 1.9822 0.8405 38 1 3.8253 3.3202 3.2592 39 1 2.2712 2.6976 4.0333 40 1 4.8158 -1.1642 5.3785 41 1 3.0156 -2.0961 7.1635 42 1 0.9123 -0.5402 7.0160 43 1 4.3460 -0.4398 -2.0228 44 1 2.7778 0.4266 -2.1455 45 1 3.7457 0.8905 -4.3064 46 1 5.3985 1.0088 -3.6312 47 1 4.1758 1.7432 -6.8031 48 1 3.1998 3.3467 -1.4625 49 1 4.9712 3.5689 -1.5059 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713719955.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:45 Heat of formation + Delta-G solvation = 36.113052 kcal Electronic energy + Delta-G solvation = -29052.019940 eV Core-core repulsion = 25175.702669 eV Total energy + Delta-G solvation = -3876.317271 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.82463 -40.29955 -37.90867 -36.36931 -35.63310 -33.22578 -32.97518 -31.85527 -29.81289 -29.21408 -27.52738 -26.22416 -25.02338 -23.80991 -23.39256 -21.92825 -21.71496 -20.53400 -20.18516 -19.99570 -18.64082 -18.00108 -17.09571 -16.97492 -16.39062 -16.02089 -15.28643 -14.94945 -14.69272 -14.60988 -14.32377 -14.07499 -13.60414 -13.26741 -13.18182 -13.04187 -12.89265 -12.70028 -12.40097 -12.28427 -12.09748 -11.94327 -11.76526 -11.58215 -11.45648 -11.17057 -11.04414 -10.88707 -10.79462 -10.77603 -10.65585 -10.29979 -10.15449 -10.13063 -9.81346 -9.62487 -9.54229 -8.66420 -8.58730 -8.38006 -6.85781 -5.66760 -3.08991 1.40285 2.30504 2.57418 2.67711 3.09680 3.39784 3.44170 3.45424 3.68586 4.17569 4.43634 4.48245 4.53010 4.66897 4.80100 4.85195 4.93183 5.01777 5.06160 5.25378 5.36395 5.42606 5.45172 5.48010 5.52997 5.55591 5.62378 5.67232 5.68992 5.72073 5.81468 5.82892 5.85689 5.86632 5.99796 6.06091 6.20237 6.24745 6.26058 6.42941 6.54157 6.59431 6.72188 6.89718 6.99634 7.48300 7.58569 7.62068 7.82955 8.29017 8.34580 9.20040 9.80622 10.44946 11.36914 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.023526 B = 0.002527 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.911187 B =11077.744815 C =11432.135707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.148 4.148 3 C 0.106 3.894 4 N -0.590 5.590 5 C 0.544 3.456 6 O -0.544 6.544 7 C -0.172 4.172 8 H 0.128 0.872 9 C -0.137 4.137 10 C -0.052 4.052 11 H 0.148 0.852 12 C 0.021 3.979 13 C -0.202 4.202 14 C -0.212 4.212 15 C -0.045 4.045 16 O -0.175 6.175 17 C 0.127 3.873 18 H 0.102 0.898 19 C -0.155 4.155 20 C 0.154 3.846 21 N -0.602 5.602 22 C -0.222 4.222 23 H 0.077 0.923 24 C -0.010 4.010 25 N -0.923 5.923 26 Si 0.915 3.085 27 H -0.285 1.285 28 H -0.290 1.290 29 H -0.285 1.285 30 C 0.130 3.870 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.076 0.924 35 H 0.060 0.940 36 H 0.092 0.908 37 H 0.074 0.926 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.149 0.851 41 H 0.148 0.852 42 H 0.202 0.798 43 H 0.060 0.940 44 H 0.070 0.930 45 H 0.109 0.891 46 H 0.014 0.986 47 H 0.253 0.747 48 H 0.027 0.973 49 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.612 -6.073 22.494 24.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.186 4.186 3 C -0.017 4.017 4 N -0.320 5.320 5 C 0.332 3.668 6 O -0.422 6.422 7 C -0.193 4.193 8 H 0.146 0.854 9 C -0.175 4.175 10 C -0.070 4.070 11 H 0.165 0.835 12 C -0.029 4.029 13 C -0.221 4.221 14 C -0.231 4.231 15 C -0.112 4.112 16 O -0.072 6.072 17 C 0.024 3.976 18 H 0.120 0.880 19 C -0.194 4.194 20 C 0.028 3.972 21 N -0.328 5.328 22 C -0.351 4.351 23 H 0.095 0.905 24 C -0.206 4.206 25 N -0.571 5.571 26 Si 0.746 3.254 27 H -0.212 1.212 28 H -0.216 1.216 29 H -0.212 1.212 30 C 0.003 3.997 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.079 0.921 36 H 0.110 0.890 37 H 0.092 0.908 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.167 0.833 41 H 0.166 0.834 42 H 0.219 0.781 43 H 0.079 0.921 44 H 0.089 0.911 45 H 0.127 0.873 46 H 0.032 0.968 47 H 0.064 0.936 48 H 0.044 0.956 49 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -7.164 -5.809 22.193 24.033 hybrid contribution -0.082 0.314 -0.544 0.633 sum -7.247 -5.495 21.650 23.482 Atomic orbital electron populations 1.21702 0.95175 1.01832 1.02019 1.22143 0.96175 0.97272 1.03018 1.21652 0.79374 0.96938 1.03706 1.47865 1.06927 1.71426 1.05789 1.19455 0.87698 0.76016 0.83671 1.90684 1.14430 1.50747 1.86311 1.22496 1.01918 1.05467 0.89454 0.85395 1.23089 1.03050 0.91519 0.99793 1.20509 0.99094 0.97791 0.89644 0.83468 1.21373 0.84159 0.98454 0.98893 1.21570 1.02216 0.98003 1.00349 1.21844 0.94729 1.03228 1.03334 1.24010 1.01343 0.90741 0.95105 1.83973 1.31867 1.46900 1.44431 1.22258 0.95293 0.97037 0.83038 0.88041 1.23523 1.01033 0.97394 0.97430 1.21974 0.98632 0.82543 0.94003 1.44418 1.85170 1.04310 0.98929 1.19021 1.41973 0.88586 0.85483 0.90541 1.24787 1.02221 0.96603 0.96977 1.69771 1.56744 1.14629 1.15961 0.86142 0.77978 0.80340 0.80967 1.21204 1.21559 1.21160 1.21535 0.98197 0.93738 0.86220 0.92848 0.92157 0.92584 0.90539 0.92119 0.88997 0.90756 0.87126 0.87154 0.83304 0.83430 0.78099 0.92101 0.91142 0.87287 0.96818 0.93634 0.95559 0.95753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.91 37.16 0.37 -1.04 16 2 C -0.15 -1.66 5.69 -26.73 -0.15 -1.81 16 3 C 0.11 1.34 3.93 -4.04 -0.02 1.32 16 4 N -0.59 -9.01 2.48 -164.02 -0.41 -9.42 16 5 C 0.54 8.26 7.42 -10.99 -0.08 8.18 16 6 O -0.54 -10.07 15.65 5.55 0.09 -9.98 16 7 C -0.17 -1.98 4.44 -91.78 -0.41 -2.39 16 8 H 0.13 1.34 6.05 -51.93 -0.31 1.03 16 9 C -0.14 -1.35 9.87 -26.71 -0.26 -1.61 16 10 C -0.05 -0.57 5.75 -91.75 -0.53 -1.09 16 11 H 0.15 1.69 7.67 -51.93 -0.40 1.29 16 12 C 0.02 0.23 6.80 -35.63 -0.24 -0.01 16 13 C -0.20 -2.06 10.81 -39.70 -0.43 -2.49 16 14 C -0.21 -1.82 10.91 -39.70 -0.43 -2.25 16 15 C -0.04 -0.36 12.09 29.42 0.36 0.00 16 16 O -0.18 -1.79 10.36 5.72 0.06 -1.73 16 17 C 0.13 2.35 3.30 -66.09 -0.22 2.14 16 18 H 0.10 2.05 7.04 -51.93 -0.37 1.68 16 19 C -0.15 -2.91 6.10 -24.47 -0.15 -3.06 16 20 C 0.15 3.70 5.89 -2.41 -0.01 3.69 16 21 N -0.60 -15.35 3.40 -169.93 -0.58 -15.93 16 22 C -0.22 -6.16 10.27 -15.06 -0.15 -6.32 16 23 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 24 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 25 N -0.92 -26.63 10.09 55.49 0.56 -26.07 16 26 Si 0.92 21.95 29.55 -169.99 -5.02 16.92 16 27 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 28 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 29 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 30 C 0.13 2.78 6.77 -3.06 -0.02 2.76 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.97 6.03 -51.93 -0.31 0.66 16 35 H 0.06 0.66 6.90 -51.93 -0.36 0.31 16 36 H 0.09 1.32 6.70 -51.93 -0.35 0.97 16 37 H 0.07 0.79 6.98 -51.92 -0.36 0.42 16 38 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.11 0.93 7.97 -51.93 -0.41 0.52 16 40 H 0.15 1.35 8.06 -52.48 -0.42 0.93 16 41 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 42 H 0.20 0.82 8.06 -52.49 -0.42 0.40 16 43 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.07 1.25 5.06 -51.93 -0.26 0.99 16 45 H 0.11 2.92 5.87 -51.93 -0.30 2.62 16 46 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 48 H 0.03 0.55 6.90 -51.93 -0.36 0.19 16 49 H 0.02 0.55 8.14 -51.92 -0.42 0.12 16 LS Contribution 388.77 15.07 5.86 5.86 Total: -1.00 -31.98 388.77 -9.50 -41.48 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -7.57 Total: 3.25 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -2.48 Total: -4.37 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: -0.42 Total: -51.42 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.15 Total: -11.72 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.98 -9.50 -41.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713719955.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.594 kcal (2) G-P(sol) polarization free energy of solvation -31.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds